View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18207_low_7 (Length: 398)
Name: NF18207_low_7
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18207_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 26 - 397
Target Start/End: Complemental strand, 33735297 - 33734927
Alignment:
| Q |
26 |
ctagtattgcgttcaatagagtaatcttgaccataatttggggtttgaccatttagaagaacataagtacaattccaaaaatttgttcaaagcttccgat |
125 |
Q |
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| T |
33735297 |
ctagtattgcgtccaatagagtaatcttgaccaaaatt-ggggtttgaccatttagaagaacataagtacaattccaaaaatttgttcaaagcttccgat |
33735199 |
T |
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| Q |
126 |
tatccatttctttaatgatgataggaggatctgatgatcgaggttgtgccactcaacttaattattctttgagagaaacgaatagcaaagacccccgatc |
225 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| |
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| T |
33735198 |
tatccatttatttaaggatgataggaggatctgatgatcgaggttgtgccactcaacttaataaaa-tttgagagaaacgaatattaaagacccccgatc |
33735100 |
T |
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| Q |
226 |
cttgtcgaaaacaatattatttgaaataccatgcaacttcaccagaatgtgcatgaaggtttcaacatccttagagctcgtgtactatgattttaatgca |
325 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33735099 |
cttatcgaaaacaatattatttgaaataccatgcaacttcaccagaatgtgtatgaaggtttcaacatccttagagctcgtgtactatgattttaatgca |
33735000 |
T |
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| Q |
326 |
gcgatgtgagtgtacttagaaatg-gatcaattaccaccaaaatgatggtgtaaccttgtgatgatgtccatc |
397 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33734999 |
gcgatgcgagtgtacttagaaatgcgatcaattaccaccaaaatgatggtgtaaccttgtgatgaagtccatc |
33734927 |
T |
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