View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18207_low_8 (Length: 376)
Name: NF18207_low_8
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18207_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 580903 - 580529
Alignment:
| Q |
1 |
tatgcaaaaggctctccaaggcatccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcccaacagcaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580903 |
tatgcaaaaggctctccaaggcatccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcccaacagcaaacc |
580804 |
T |
|
| Q |
101 |
tatcaggatcatacttatcagggtcattgaaaatgtgtggtaacctgtttgcaaatgcaggggatgtagcaactatatgacccttgggaatgtcatactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580803 |
tatcaggatcatacttatcagggtcattgaaaatgtgtggtaacctgtttgcaaatgcaggggatgtagcaactatatgacccttgggaatgtcatactc |
580704 |
T |
|
| Q |
201 |
tttcccctctcttgttgtgacgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcagggcttctttaatgcacctatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580703 |
tttcccctctcttgttgtgacgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcagggcttctttaatgcacctatac |
580604 |
T |
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| Q |
301 |
aagacatccatctcagccaaaacatcgtgatcaactctatctctgtgtttctccatcaagttcctttgctactcc |
375 |
Q |
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| T |
580603 |
aagacatccatctcagccaaaacatcgtgatcaactctatctccgtgtttctccatcaagttcttttgctcctcc |
580529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 591524 - 591898
Alignment:
| Q |
1 |
tatgcaaaaggctctccaaggcatccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcccaacagcaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591524 |
tatgcaaaaggctctccaaggcatccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcccaacagcaaacc |
591623 |
T |
|
| Q |
101 |
tatcaggatcatacttatcagggtcattgaaaatgtgtggtaacctgtttgcaaatgcaggggatgtagcaactatatgacccttgggaatgtcatactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591624 |
tatcaggatcatacttatcagggtcattgaaaatgtgtggtaacctgtttgcaaatgcaggggatgtagcaactatatgacccttgggaatgtcatactc |
591723 |
T |
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| Q |
201 |
tttcccctctcttgttgtgacgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcagggcttctttaatgcacctatac |
300 |
Q |
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| T |
591724 |
tttcccctctcttgttgtgacgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcagggcttctttaatgcacctatac |
591823 |
T |
|
| Q |
301 |
aagacatccatctcagccaaaacatcgtgatcaactctatctctgtgtttctccatcaagttcctttgctactcc |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||| |
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| T |
591824 |
aagacatccatctcagccaaaacatcgtgatcaactctatctccgtgtttctccatcaagttcttttgctcctcc |
591898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 37434607 - 37434363
Alignment:
| Q |
22 |
catccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcccaacagcaaacctatcaggatcatacttatcag |
121 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| | |||||| | || |||||| |
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| T |
37434607 |
catccatgtctaccacctccaaaggaaatgtaagagaatgcctctgccaccttgtctttttccctcc-------atacctataa-------acctatcag |
37434522 |
T |
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| Q |
122 |
ggtcattgaaaatgtgtggtaacctgtttgcaaatgcaggggatgtagcaact--atatgacccttgggaatgtcatactctttcccctctcttgttgtg |
219 |
Q |
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| ||||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||||| |||||||||||| |
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| T |
37434521 |
gatcattgaaaatatgaggtaacctgtttgcaaatgcaagggatgtagcaactctatatgacccttgggaattccatactttttcccttctcttgttgtg |
37434422 |
T |
|
| Q |
220 |
acgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcag |
278 |
Q |
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||||||||||| | ||||||| |||||||| |||||| | |||||||||||||||||| |
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| T |
37434421 |
acgctgaaatctccgtgtgagtttctcagcggcataatcaatggagggtggagtctcag |
37434363 |
T |
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