View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18207_low_9 (Length: 373)
Name: NF18207_low_9
Description: NF18207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18207_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 49016482 - 49016157
Alignment:
| Q |
18 |
caagcacttggtttgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgc |
117 |
Q |
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| T |
49016482 |
caagcacttggtttgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttacggattgc |
49016383 |
T |
|
| Q |
118 |
tcccacaaatcctaagtttctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49016382 |
tcccacaaatcctaagtttctatttttcccccaatgtggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagc |
49016283 |
T |
|
| Q |
218 |
ctaggagtcaatggatctttactacggtaatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49016282 |
ctaggagtcaatggatctttactacggtaatatgtgatgtcgaaatccacagcat--tctgtgtttcccaagtatgcactagaagttgtaacgtagcgca |
49016185 |
T |
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| Q |
318 |
taaggattccattgtatagatctaagcc |
345 |
Q |
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| T |
49016184 |
taaggattccattgtatagatctaagcc |
49016157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 73 - 348
Target Start/End: Original strand, 490327 - 490602
Alignment:
| Q |
73 |
tttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttcccccaatgcggtaaccctccatatttg |
172 |
Q |
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| T |
490327 |
tttaaccttcaaaaacctatttgccttattatatttttttattgcccccacaaatcctatatttctattttttccccaatggggtaaccctccatatttg |
490426 |
T |
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| Q |
173 |
aacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggtaatatgtgatgtcgaaattcacagcat |
272 |
Q |
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||||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||| || | |||||||| |
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| T |
490427 |
aacaatcctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatggatctttactgcggtaatatatgatgtcaaattccacagcat |
490526 |
T |
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| Q |
273 |
cctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgtatagatctaagccaca |
348 |
Q |
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| T |
490527 |
cttctgtttttcccaagtatgcactagaagttgtaacataacgcatgaggattccattgtacaagtctaagccaca |
490602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 134 - 334
Target Start/End: Complemental strand, 9072069 - 9071869
Alignment:
| Q |
134 |
tttctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggat |
233 |
Q |
| |
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|||||||| || |||||||| |||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||| |||||||||||| || ||||| |
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| T |
9072069 |
tttctattcttaccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggat |
9071970 |
T |
|
| Q |
234 |
ctttactacggtaatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgta |
333 |
Q |
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|||| ||||| ||||||||||| || || | | ||||||||| |||||| | ||| |||||||||| |||||| || ||||| || ||||||||||| |
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| T |
9071969 |
ctttgctacgataatatgtgatatcaaagtctaatgcatcctcttggtttcctaggtaagcactagaagctgtaacataacgcattagaattccattgta |
9071870 |
T |
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| Q |
334 |
t |
334 |
Q |
| |
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| |
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| T |
9071869 |
t |
9071869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 137 - 254
Target Start/End: Complemental strand, 9059350 - 9059233
Alignment:
| Q |
137 |
ctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctt |
236 |
Q |
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||||| ||||||||||| || |||||||||||||| || | ||| ||||| || |||||||||| | ||||||| ||||||||||||||| |||||||| |
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| T |
9059350 |
ctattcttcccccaatgaggcaaccctccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtcattggatctt |
9059251 |
T |
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| Q |
237 |
tactacggtaatatgtga |
254 |
Q |
| |
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| ||||||||||| |||| |
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| T |
9059250 |
tgctacggtaatacgtga |
9059233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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