View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_high_14 (Length: 283)
Name: NF18208_high_14
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_high_14 |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 5839920 - 5839669
Alignment:
| Q |
14 |
gaaggaaggtggaagtagcagttcatcagaccatgcaaatttcaaagatgaaattctgaggaaatttggaagttttaagaaattcgatattgccagtgac |
113 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5839920 |
gaaggaaggcggaagtagcagttcatcagaccatgcaaatttcaaagatgaaattctgaggaaatttggaagttttaagaaattcgatattgccagtgac |
5839821 |
T |
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| Q |
114 |
actaaacaccgttactttgttcggaaaaattcgtccaaaaattataggagtttacaatgaacctatttcattaacagcatcaaaggaattgggctaaaag |
213 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5839820 |
actaaacaccattactttgttcggaaaaattggtccaaaaattataggagtttacaatgaacctatttcattaacagcatcaaaggaattgggctaaaag |
5839721 |
T |
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| Q |
214 |
aatccagaaagagtggaagattttggagaacaatttgccaggtgagtttgtt |
265 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5839720 |
aatccagaaagagtggaagattttagagaacaatttgccaggtgagtttgtt |
5839669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 33363227 - 33363287
Alignment:
| Q |
202 |
ttgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagttt |
262 |
Q |
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| T |
33363227 |
ttgggctaaaaaaatccaggaagagtggaggattttggaggagcatttgccgggtgagttt |
33363287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 33369658 - 33369697
Alignment:
| Q |
202 |
ttgggctaaaagaatccagaaagagtggaagattttggag |
241 |
Q |
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| T |
33369658 |
ttgggctaaaaaaatccaggaagagtggaagattttggag |
33369697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 261
Target Start/End: Original strand, 52472732 - 52472828
Alignment:
| Q |
165 |
ttacaatgaacctatttcattaacagcatcaaaggaattgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagtt |
261 |
Q |
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||||||||||| |||||| | ||||||||| | ||||||||||||| |||| ||||||| ||||||||||||||||| ||||||| |||||||| |
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| T |
52472732 |
ttacaatgaacttatttcctgaacagcatccagagaattgggctaaagaaatcaagaaagaatggaagattttggagaaggatttgccgggtgagtt |
52472828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 52472650 - 52472715
Alignment:
| Q |
43 |
accatgcaaatttcaaagatgaaattctgaggaaatttggaagttttaagaaattcgatattgcca |
108 |
Q |
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| T |
52472650 |
accatgcaaatatcaaagatgaaattctgataaaattccgaagttttaagcaatttgatattgcca |
52472715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 7238640 - 7238595
Alignment:
| Q |
220 |
gaaagagtggaagattttggagaacaatttgccaggtgagtttgtt |
265 |
Q |
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|||||| ||||||||||||||||| |||||||||||| |||||||| |
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| T |
7238640 |
gaaagattggaagattttggagaagaatttgccaggtaagtttgtt |
7238595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 41453229 - 41453290
Alignment:
| Q |
202 |
ttgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagtttg |
263 |
Q |
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|||||||| || ||| ||||||||||||||||||||| | || |||||||||||||||||| |
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| T |
41453229 |
ttgggctagaaaaattcagaaagagtggaagattttgaaaaagcatttgccaggtgagtttg |
41453290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 38793381 - 38793277
Alignment:
| Q |
161 |
gagtttacaatgaacctatttcattaacagcatcaaaggaattgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagt |
260 |
Q |
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|||||| ||||||||||||||| | ||||||||||| |||||||||||| ||||| |||||| | |||||||||||||| ||| |||||||||| |
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| T |
38793381 |
gagttttcaatgaacctatttcctgaacagcatcaagaaaattgggctaaagaaatccggaaagaaagaaagattttggagaaggattagccaggtgaga |
38793282 |
T |
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| Q |
261 |
ttgtt |
265 |
Q |
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||||| |
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| T |
38793281 |
ttgtt |
38793277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 7763458 - 7763371
Alignment:
| Q |
173 |
aacctatttcattaacagcatcaaaggaattgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagt |
260 |
Q |
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|||||||||| | | ||| ||| || |||||||||||||| ||||||| ||||||||| |||||||||||| ||||||| ||||||| |
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| T |
7763458 |
aacctatttcctgagcagaatccaaagaattgggctaaaaaaatccaggaagagtggaggattttggagaagcatttgccgggtgagt |
7763371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 11719487 - 11719549
Alignment:
| Q |
200 |
aattgggctaaaagaatccagaaagagtggaagattttggagaacaatttgccaggtgagttt |
262 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| | | |||||| ||| ||||| |
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| T |
11719487 |
aattgggctaaagtaatccagaaagagtggaagattttggaggagagtttgccgggttagttt |
11719549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 5470 - 5511
Alignment:
| Q |
202 |
ttgggctaaaagaatccagaaagagtggaagattttggagaa |
243 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
5470 |
ttgggctaaaaaaatccaggaagagtggaagattttggagaa |
5511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 17988 - 17947
Alignment:
| Q |
202 |
ttgggctaaaagaatccagaaagagtggaagattttggagaa |
243 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
17988 |
ttgggctaaaaaaatccaggaagagtggaagattttggagaa |
17947 |
T |
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