View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_high_16 (Length: 274)
Name: NF18208_high_16
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 5051806 - 5052050
Alignment:
| Q |
11 |
atcatcaatcataacttggatgcagaaggaaacaatgacgtgaatatcgtgcacccaaattttttgttagtattggatgacgttttggatgcaagatctg |
110 |
Q |
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| T |
5051806 |
atcatcaatcataacttggatgcagaaggaaacattgacgtgaatatcgtgtacccaaattttttattagtattggatgacgttttggatgcaagatctg |
5051905 |
T |
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| Q |
111 |
tcaattggacattactgatggatatgttaaacgctcagaaaacgggtagcacaattatcatcacaacacgagatgaaagagttccaaaatccatggaaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5051906 |
tcaattggacattactgatggatatgttaaacgctcagaaaacgggtagcacaattatcatcacaacacgagatgaaagagttccaaaatccatggaaag |
5052005 |
T |
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| Q |
211 |
cnnnnnnnatgtccactatttgagacctttggaaagcgaagattg |
255 |
Q |
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| T |
5052006 |
ctttttttatgtccactatttgagacctttggaaagcgaagattg |
5052050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 256
Target Start/End: Complemental strand, 11491277 - 11491096
Alignment:
| Q |
75 |
tgttagtattggatgacgttttggatgcaagatctgtcaattggacattactgatggatatgttaaacgctcagaaaacgggtagcacaattatcatcac |
174 |
Q |
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||||| |||||||||||||| |||||||||||| |||||||||||||||||| || ||||| ||||| ||| |||| || ||| || |||||||| |
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| T |
11491277 |
tgttaatattggatgacgttctggatgcaagatgtgtcaattggacattacttatagatatcttaaatgctggaaaaagaggaagcgagatcatcatcac |
11491178 |
T |
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| Q |
175 |
aacacgagatgaaagagttccaaaatccatggaaagcnnnnnnnatgtccactatttgagacctttggaaagcgaagattgt |
256 |
Q |
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| T |
11491177 |
aacacgagatgaaagactaccaaaatccatgcaaactttttcttatgtccactatttgagacctctagaaagcgaagattgt |
11491096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 255
Target Start/End: Original strand, 2919473 - 2919678
Alignment:
| Q |
50 |
gtgaatatcgtgcacccaaattttttgttagtattggatgacgttttggatgcaagatctgtcaattggacattactgatggatatgttaaacgctcaga |
149 |
Q |
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||||||| | || |||||||||||||| |||||||||||||||| | |||||||||||| |||||||||| |||||||||||| || || || | | |
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| T |
2919473 |
gtgaataccatgtacccaaattttttgctagtattggatgacgtgtgggatgcaagatccgtcaattggatattactgatggacatctttaatgtggtgg |
2919572 |
T |
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| Q |
150 |
aaacgggtagcacaattatcatcacaacacgagatgaaagagttccaaaatccatggaaagcnnnnnnnatgtccactatttgagacctttggaaagcga |
249 |
Q |
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|||| || || | || |||||||| |||||||||||||||||||||| ||||||| ||| | ||||||||||| |||||| | |||||| || |
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| T |
2919573 |
aaactggaagtaggatcatcatcactacacgagatgaaagagttccaatatccatgcaaacctttttttatgtccactatatgagacatctggaaacaga |
2919672 |
T |
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| Q |
250 |
agattg |
255 |
Q |
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|||||| |
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| T |
2919673 |
agattg |
2919678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 11497652 - 11497563
Alignment:
| Q |
167 |
atcatcacaacacgagatgaaagagttccaaaatccatggaaagcnnnnnnnatgtccactatttgagacctttggaaagcgaagattgt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||| ||||||||||||||||| |
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| T |
11497652 |
atcatcacaacacgagatgaaagagttccaaaatccatgcaaacctttttttatgtccactatttgaaacctctggaaagcgaagattgt |
11497563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 193
Target Start/End: Complemental strand, 7492446 - 7492316
Alignment:
| Q |
63 |
acccaaattttttgttagtattggatgacgttttggatgcaagatctgtcaattggacattactgatggatatgttaaacgctcagaaaacgggtagcac |
162 |
Q |
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|||||| ||||||| |||||||||||||||| | |||||||| ||||||| |||||| |||||||||| |||| || || ||| |||||||| || | |
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| T |
7492446 |
acccaatttttttgctagtattggatgacgtgtgggatgcaaaatctgtcgattggatattactgatgaatatatttaatgctgggaaaacggaaagtag |
7492347 |
T |
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| Q |
163 |
aattatcatcacaacacgagatgaaagagtt |
193 |
Q |
| |
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| T |
7492346 |
gatcatcatcacaacacgagatgaaaaagtt |
7492316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 5965762 - 5965834
Alignment:
| Q |
63 |
acccaaattttttgttagtattggatgacgttttggatgcaagatctgtcaattggacattactgatggatat |
135 |
Q |
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||||||| | |||| |||||||||||| || | |||||||||||| |||||||||||||| ||||| |||| |
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| T |
5965762 |
acccaaaatatttgctagtattggatggggtatgtgatgcaagatctatcaattggacattaatgatgaatat |
5965834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 65 - 256
Target Start/End: Original strand, 17311711 - 17311902
Alignment:
| Q |
65 |
ccaaattttttgttagtattggatgacgttttggatgcaagatctgtcaattggacattactgatggatatgttaaacgctcagaaaacgggtagcacaa |
164 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||| || |||| | |
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| T |
17311711 |
ccaaattttttgttagtattggatgatgttttggatgcaagatctgtcaattggacattacttatggatatcttaaatgctatgaaaacaggaagcatga |
17311810 |
T |
|
| Q |
165 |
ttatcatcacaacacgagatgaaagagttccaaaatccatggaaagcnnnnnnnatgtccactatttgagacctttggaaagcgaagattgt |
256 |
Q |
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| T |
17311811 |
tcattatcacaacacgagatgaaagagttccaaaatccatgcaaacctttttttatgtccactatttgagacctctagaaagcgaagattgt |
17311902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 5988588 - 5988677
Alignment:
| Q |
167 |
atcatcacaacacgagatgaaagagttccaaaatccatggaaagcnnnnnnnatgtccactatttgagacctttggaaagcgaagattgt |
256 |
Q |
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|||||||||||| | |||||||||||| ||| ||||||| ||| | ||||||||||||||||||| ||||||| ||||||||| |
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| T |
5988588 |
atcatcacaacaagggatgaaagagttgcaagatccatgcaaatctttctctctgtccactatttgagacctctggaaagtgaagattgt |
5988677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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