View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18208_high_17 (Length: 266)

Name: NF18208_high_17
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18208_high_17
NF18208_high_17
[»] chr6 (2 HSPs)
chr6 (5-266)||(24197417-24197683)
chr6 (177-222)||(18859877-18859922)
[»] chr5 (3 HSPs)
chr5 (5-246)||(43449223-43449467)
chr5 (177-213)||(10028400-10028436)
chr5 (177-213)||(30343133-30343169)
[»] chr3 (2 HSPs)
chr3 (28-263)||(47697499-47697737)
chr3 (111-145)||(15324578-15324612)
[»] scaffold0225 (1 HSPs)
scaffold0225 (177-222)||(11104-11149)
[»] scaffold0029 (1 HSPs)
scaffold0029 (178-222)||(139085-139129)
[»] scaffold0002 (1 HSPs)
scaffold0002 (178-222)||(316551-316595)
[»] scaffold0262 (1 HSPs)
scaffold0262 (177-216)||(22387-22426)
[»] chr8 (1 HSPs)
chr8 (111-145)||(14774381-14774415)
[»] chr1 (1 HSPs)
chr1 (177-222)||(14856846-14856891)
[»] scaffold0118 (2 HSPs)
scaffold0118 (177-213)||(22296-22332)
scaffold0118 (177-213)||(25248-25284)
[»] chr7 (3 HSPs)
chr7 (161-205)||(17501878-17501922)
chr7 (161-205)||(17551292-17551336)
chr7 (177-213)||(42235409-42235445)
[»] chr4 (1 HSPs)
chr4 (177-213)||(55555861-55555897)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 24197683 - 24197417
Alignment:
Q  5 cgaagaatatatggtctacctcaaattttaatttgaagttgtggaaatttccattttagtgtttttattatagnnnnnnnnnattaagaatatcattnnn 104  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||       
T  24197683 cgaaaaatatatggtctacctcaaattttaaattgaagttgtggaaatttccattttagtgtttttattatagtttttttttattaagaatatcattaaa 24197584  T
Q  105 nnnn--tgaattgatttctataatcatagtgcgcattaaatcataatnnnnnnnngtattatcaaaataaaagggaatgacaattgaacatttaaatgtt 202  Q
          |||||||||||||||||||||||||| ||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||||||    
T  24197583 aaaaaatgaattgatttctataatcatagtgcacattaaatcataataaaaaaa-gtattatcaaaagaaaagggaatgacaattgaacatttaaatgtt 24197485  T
Q  203 tgaattttaataagtaaaatggtac----ttagagagtacaatgggtgttctagcctatattatatac 266  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  24197484 tgaattttaataagtaaaatggtacataattagagagtacaatgggtgttctagcctatattatatac 24197417  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 18859922 - 18859877
Alignment:
Q  177 gaatgacaattgaacatttaaatgtttgaattttaataagtaaaat 222  Q
    |||||||||||| | |||||||||||||| |||||||||| |||||    
T  18859922 gaatgacaattggatatttaaatgtttgagttttaataaggaaaat 18859877  T

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Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 43449467 - 43449223
Alignment:
Q  5 cgaagaatatatggtctacctcaaattttaatttgaagttgtggaaatttccattttagtgtttttattatagnnnnnnnnnattaagaatatcattnnn 104  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||       
T  43449467 cgaaaaatatatggtctacctcaaattttaaattgaagttgtggaaatttccattttagtgtttttattatagttttttt--attaagaatatcattaaa 43449370  T
Q  105 nnnn-tgaattgatttctataatcatagtgcgcattaaatcataatnnnnnnnngtattatcaaaataaaagggaatgacaattgaacatttaaatgttt 203  Q
         |||||||||| ||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||||||||||||||||||||    
T  43449369 aaaaatgaattgattgctataatcatagtgcgcattaaatcataataaaaaaaagtattatcaaaagaaaagggaatgacaattgaacatttaaatgttt 43449270  T
Q  204 gaattttaataagtaaaatggtac----ttagagagtacaatgggtg 246  Q
    ||||||||||||||||||||||||    |||||||||||||||||||    
T  43449269 gaattttaataagtaaaatggtacataattagagagtacaatgggtg 43449223  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 10028436 - 10028400
Alignment:
Q  177 gaatgacaattgaacatttaaatgtttgaattttaat 213  Q
    |||||||||||||| |||||||||||||| |||||||    
T  10028436 gaatgacaattgaatatttaaatgtttgagttttaat 10028400  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 30343133 - 30343169
Alignment:
Q  177 gaatgacaattgaacatttaaatgtttgaattttaat 213  Q
    |||||||||||||| |||||||||||||| |||||||    
T  30343133 gaatgacaattgaatatttaaatgtttgagttttaat 30343169  T

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Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 263
Target Start/End: Complemental strand, 47697737 - 47697499
Alignment:
Q  28 aattttaatttgaagttgtggaaatttccattttagtgtttttattatagnnnnnnnnnattaagaatatcattnnnnnnntgaattgatttctataatc 127  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||       |||||||||||||||||||    
T  47697737 aatttttaattgaagttgtggaaatttccattttagtgtttttattatagattttttttattaagaatatcattaaaaaaatgaattgatttctataatc 47697638  T
Q  128 atagtgcgcattaaatcataatnnnnnnnngtattatcaaaataaaagggaatgacaattgaacatttaaatgtttgaattttaataagtaaaatggtac 227  Q
    ||||||||||||||||||||||        |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47697637 atagtgcgcattaaatcataataaaaaat-gtattatcaaaagaacaaggaatgacaattgaacatttaaatgtttgaattttaataagtaaaatggtac 47697539  T
Q  228 ----ttagagagtacaatgggtgttctagcctatattata 263  Q
        |||||||||||||||||| |||||||||||||||||    
T  47697538 ataattagagagtacaatgggtattctagcctatattata 47697499  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 15324578 - 15324612
Alignment:
Q  111 aattgatttctataatcatagtgcgcattaaatca 145  Q
    ||||||||||||||||||| |||||||||||||||    
T  15324578 aattgatttctataatcatggtgcgcattaaatca 15324612  T

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Target: scaffold0225 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 11104 - 11149
Alignment:
Q  177 gaatgacaattgaacatttaaatgtttgaattttaataagtaaaat 222  Q
    |||||||||||||| |||||||||||||| |||||||||| |||||    
T  11104 gaatgacaattgaaaatttaaatgtttgagttttaataaggaaaat 11149  T

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Target: scaffold0029 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 139085 - 139129
Alignment:
Q  178 aatgacaattgaacatttaaatgtttgaattttaataagtaaaat 222  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||    
T  139085 aatgacaattgaatatttaaatgtttgagttttaataaggaaaat 139129  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 316551 - 316595
Alignment:
Q  178 aatgacaattgaacatttaaatgtttgaattttaataagtaaaat 222  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||    
T  316551 aatgacaattgaatatttaaatgtttgagttttaataaggaaaat 316595  T

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Target: scaffold0262 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 22426 - 22387
Alignment:
Q  177 gaatgacaattgaacatttaaatgtttgaattttaataag 216  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  22426 gaatgacaattgaatatttaaatgtttgatttttaataag 22387  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 14774415 - 14774381
Alignment:
Q  111 aattgatttctataatcatagtgcgcattaaatca 145  Q
    ||||||||||||||||||| |||||||||||||||    
T  14774415 aattgatttctataatcatggtgcgcattaaatca 14774381  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 14856891 - 14856846
Alignment:
Q  177 gaatgacaattgaacatttaaatgtttgaattttaataagtaaaat 222  Q
    |||||||||||| | |||||||||||||| |||||||||| |||||    
T  14856891 gaatgacaattggatatttaaatgtttgagttttaataaggaaaat 14856846  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 22296 - 22332
Alignment:
Q  177 gaatgacaattgaacatttaaatgtttgaattttaat 213  Q
    |||||||||||||| |||||||||||||| |||||||    
T  22296 gaatgacaattgaatatttaaatgtttgagttttaat 22332  T

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Target: scaffold0118; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 25248 - 25284
Alignment:
Q  177 gaatgacaattgaacatttaaatgtttgaattttaat 213  Q
    |||||||||||||| |||||||||||||| |||||||    
T  25248 gaatgacaattgaatatttaaatgtttgagttttaat 25284  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 17501878 - 17501922
Alignment:
Q  161 ttatcaaaataaaagggaatgacaattgaacatttaaatgtttga 205  Q
    |||||||||||||| ||||||||||||  | ||||||||||||||    
T  17501878 ttatcaaaataaaaaggaatgacaattagatatttaaatgtttga 17501922  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 17551336 - 17551292
Alignment:
Q  161 ttatcaaaataaaagggaatgacaattgaacatttaaatgtttga 205  Q
    |||||||||||||| ||||||||||||  | ||||||||||||||    
T  17551336 ttatcaaaataaaaaggaatgacaattagatatttaaatgtttga 17551292  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 42235445 - 42235409
Alignment:
Q  177 gaatgacaattgaacatttaaatgtttgaattttaat 213  Q
    |||||||||||||| |||||||||||||| |||||||    
T  42235445 gaatgacaattgaatatttaaatgtttgagttttaat 42235409  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 55555861 - 55555897
Alignment:
Q  177 gaatgacaattgaacatttaaatgtttgaattttaat 213  Q
    |||||||||||||| |||||||||||||| |||||||    
T  55555861 gaatgacaattgaatatttaaatgtttgagttttaat 55555897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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