View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_high_23 (Length: 227)
Name: NF18208_high_23
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_high_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5840150 - 5839924
Alignment:
| Q |
1 |
attgaagccattaatcaaattgtggtttgtataagattcaaattcagattaagatgttatttgtcatttctcctagtacattgatattatcttttctaac |
100 |
Q |
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| T |
5840150 |
attgaagccattaatcaaattgtggtttgtataagattcaaattcagattaagatgttatttgtcatttctcctagtacattgatattatcttttctaac |
5840051 |
T |
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| Q |
101 |
ttgtaaatgtctaacatttcgctccaaatccttttcatgatgtgtctggttatatgttttttcagcaccgcgttgcatatgatacacaatcaggttttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5840050 |
ttgtaaatgtctaacatttcgctccaaatccttttcatgatgtgtctggttatatgttttttcagcaccgcgttgcatatgatacacaatcaggttttaa |
5839951 |
T |
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| Q |
201 |
aatgaagtctgctacttttggaagtgc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5839950 |
aatgaagtctgctacttttggaagtgc |
5839924 |
T |
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