View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18208_high_3 (Length: 613)
Name: NF18208_high_3
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Original strand, 11860598 - 11861203
Alignment:
| Q |
1 |
taagatcactcacagatcttaacagactgggaggccacttggaaatatctcatcttgaacaagtcaagttctctccatcaaaggaagctgccaaagatga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11860598 |
taagatcactcacagatcttaacaatctgagaggccacttggaaatttctcatcttgaacaagtcaagttctctccatcaaaggaagctgctaaagatga |
11860697 |
T |
|
| Q |
101 |
atttttgaaaaataaacaacatctcgagttcttgactctaagatgggatca---cgaggaggaagaaagcgatgtcgtcatcgataataaatttatggat |
197 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||| ||| |
|
|
| T |
11860698 |
ttttttgaaaaataagcaacacctcgagttcttgactctaagatgggatcatgacgaggaggaagaaagcaatgtcgacattgataataaatttatcgat |
11860797 |
T |
|
| Q |
198 |
tttctcgagccacatcagaatctgaaagtgctattagtcgtcgggtaccatggccacatgttgtctaattggctcacttcacttcaattccttgttaagt |
297 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |
|
|
| T |
11860798 |
tgtctcgagccacatcagaatctgaaagagctattagttgtcgggtaccatggccacatgttgtctaattggctcgcttcacttcaattccttggtaaat |
11860897 |
T |
|
| Q |
298 |
ttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacgtctcaaggttctccaacttcgtagattggactctttgaaatt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11860898 |
ttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacatctcaaggttctccaacttcggagattggactctttgaaatt |
11860997 |
T |
|
| Q |
398 |
cattgcaaagaacaatcaagataatacnnnnnnnttctttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaa |
497 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11860998 |
cattgcagagaacaatcacactaatacaccaaaattctttccatccttgaaggaacttgcaatctcagattgtcctaatctaaaaagttggtgggaaaaa |
11861097 |
T |
|
| Q |
498 |
gacatatcggaaaaagatagaccatctttcagttgcatttcaaagctaaatatccaatattgtcctcagttagcttgcatgccgctatatcccggtcttg |
597 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
11861098 |
gacatacgggaaaatgatagaccatctttcagttgcatttcaaagctaaatatccaatattgtcctcagttagcttccatgccactatatcccggtcttg |
11861197 |
T |
|
| Q |
598 |
atgatg |
603 |
Q |
| |
|
|||||| |
|
|
| T |
11861198 |
atgatg |
11861203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 603
Target Start/End: Original strand, 11828463 - 11829071
Alignment:
| Q |
1 |
taagatcactcacagatcttaacagactgggaggccacttggaaatatctcatcttgaacaagtcaagttctctccatcaaaggaagctgccaaagatga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
11828463 |
taagatcactcacagatcttaacaatctgaggggccacttggaaattatgcatctggaacaaatcaagttctctccatcaaaagaagctgctaaagatga |
11828562 |
T |
|
| Q |
101 |
atttttgaaaaataaacaacatctcgagttcttgactctaagatgggatcacgaggagga------agaaagcgatgtcgtcatcgataataaatttatg |
194 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| |||||| | || || |||| | |
|
|
| T |
11828563 |
ttttttgaaaaataaacaacaccttgagttcttgactctaagatgggatcacgatgaggaggacgaagaaagcaatgtcgagaaagacaagaaatcgctt |
11828662 |
T |
|
| Q |
195 |
gattttctcgagccacatcagaatctgaaagtgctattagtcgtcgggtaccatggccacatgttgtctaattggctcacttcacttcaattccttgtta |
294 |
Q |
| |
|
|||| |||| ||||||||| |||||| ||||||||||||| ||||||||| | || |||| |||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
11828663 |
gattgtctccagccacatccaaatctgcaagtgctattagttgtcgggtacaacggtcacacattgtctaactggctcgcttcacttcaatgccttgtta |
11828762 |
T |
|
| Q |
295 |
agtttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacgtctcaaggttctccaacttcgtagattggactctttgaa |
394 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11828763 |
agtttaccttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagcttccacatctcaaggttctccaacttcggagattggactctttgaa |
11828862 |
T |
|
| Q |
395 |
attcattgcaaagaacaatcaagataatacnnnnnnnttctttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgggaa |
494 |
Q |
| |
|
||| ||||||||||||||||||| | |||| |||||||||| |||||||||||| |||||||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
11828863 |
atttattgcaaagaacaatcaagctgatacacctatattctttccatccttgaaggaactaacaatctcagattgtcttaaactaaaaggttggtgggaa |
11828962 |
T |
|
| Q |
495 |
aaagacatatcggaaaaagatagaccatctttcagttgcatttcaaagctaaatatccaatattgtcctcagttagcttgcatgccgctatatcccggtc |
594 |
Q |
| |
|
|| ||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
11828963 |
aatgacatatgggacaatgatagaccatctttcagttgcatttcaaagctaaatatccaatactgtcctcaattagcttgcatgctgctctatcccggtc |
11829062 |
T |
|
| Q |
595 |
ttgatgatg |
603 |
Q |
| |
|
||||||||| |
|
|
| T |
11829063 |
ttgatgatg |
11829071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 435 - 603
Target Start/End: Complemental strand, 11901477 - 11901309
Alignment:
| Q |
435 |
tttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatatcggaaaaagatagaccatctttcagttgca |
534 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||||| ||||||||||||||||| || || | || || |||||||||| ||||||||||| |
|
|
| T |
11901477 |
tttccatccttgaaggaacttacaatttcggattgtcctaatctgaaaagttggtgggaaaatgagatttggggtaatgatagaccatatttcagttgca |
11901378 |
T |
|
| Q |
535 |
tttcaaagctaaatatccaatattgtcctcagttagcttgcatgccgctatatcccggtcttgatgatg |
603 |
Q |
| |
|
||||||| ||||| ||||||| ||||||| | |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
11901377 |
tttcaaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
11901309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 603
Target Start/End: Original strand, 12039824 - 12039992
Alignment:
| Q |
435 |
tttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatatcggaaaaagatagaccatctttcagttgca |
534 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||||| || |||| ||| || |||||||||||||||||||||| |
|
|
| T |
12039824 |
tttccatccttgaaggaacttacaatctcggattgtccaaatctaaacagttggtgggaaactgagatatgggataatgatagaccatctttcagttgca |
12039923 |
T |
|
| Q |
535 |
tttcaaagctaaatatccaatattgtcctcagttagcttgcatgccgctatatcccggtcttgatgatg |
603 |
Q |
| |
|
|||| || |||||| |||||||||| || |||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
12039924 |
tttccaaactaaatgtccaatattgccccaagttagcttgcatgccactatatcctaatcttgatgatg |
12039992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 288 - 417
Target Start/End: Complemental strand, 11901645 - 11901516
Alignment:
| Q |
288 |
cttgttaagtttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacgtctcaaggttctccaacttcgtagattggact |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||| |||||||||||||||| |||| ||| |||||| |
|
|
| T |
11901645 |
cttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaaattcggagactggact |
11901546 |
T |
|
| Q |
388 |
ctttgaaattcattgcaaagaacaatcaag |
417 |
Q |
| |
|
|| |||||||||||||| | |||||||||| |
|
|
| T |
11901545 |
ctctgaaattcattgcagaaaacaatcaag |
11901516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 11901949 - 11901806
Alignment:
| Q |
8 |
actcacagatcttaacagactgggaggccacttggaaatatctcatcttgaacaagtcaagttctctccatcaaaggaagctgccaaagatgaatttttg |
107 |
Q |
| |
|
|||||| |||||||||| ||| |||||| ||||||||||| ||||| |||||||||| |||||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
11901949 |
actcacggatcttaacaatctgagaggccggttggaaatatcgcatctagaacaagtcatgttctctccatctaaggaagctgctcaagatgaatttctg |
11901850 |
T |
|
| Q |
108 |
aaaaataaacaacatctcgagttcttgactctaagatgggatca |
151 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
11901849 |
aaaaataaacaacaccttgagtttttgactctaagatgggatca |
11901806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 417
Target Start/End: Original strand, 12039643 - 12039785
Alignment:
| Q |
275 |
ttcacttcaattccttgttaagtttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacgtctcaaggttctccaactt |
374 |
Q |
| |
|
||||||||| | |||||||||||||||||||| ||||| || || ||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
12039643 |
ttcacttcattgtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggttctccaactt |
12039742 |
T |
|
| Q |
375 |
cgtagattggactctttgaaattcattgcaaagaacaatcaag |
417 |
Q |
| |
|
|| || |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
12039743 |
cgaaggttggactcactgaaattcattgcaaaaaacaatcaag |
12039785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 12039370 - 12039522
Alignment:
| Q |
8 |
actcacagatcttaacagactgggaggccacttggaaatatctcatcttgaacaagtcaagttctctccatcaaaggaagctgccaaagatgaatttttg |
107 |
Q |
| |
|
|||||| ||||| |||| |||| |||| ||| ||||||| || ||||| ||||||||||||||||| | ||| |||||| ||| ||||||||||||||| |
|
|
| T |
12039370 |
actcaccgatctcaacaaactgagaggtcacatggaaatttcgcatctggaacaagtcaagttctcgcaatccaaggaaattgctaaagatgaatttttg |
12039469 |
T |
|
| Q |
108 |
aaaaataaacaacatctcgagttcttgactctaagatgggatcacgaggagga |
160 |
Q |
| |
|
||||| ||| || | || | |||||||||||||||||||||||| |||||||| |
|
|
| T |
12039470 |
aaaaacaaaaaataccttgggttcttgactctaagatgggatcatgaggagga |
12039522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 240 - 404
Target Start/End: Original strand, 11732512 - 11732676
Alignment:
| Q |
240 |
gggtaccatggccacatgttgtctaattggctcacttcacttcaattccttgttaagtttaccttgaacgactgtcccaattgcaaatttctcccaccaa |
339 |
Q |
| |
|
|||||| |||||| || || ||||| |||||| ||| ||||||| |||||||||||||||||||| |||||||| || ||||||||||| || |||| |
|
|
| T |
11732512 |
gggtacaatggccgcaccttatctaaatggctcgattcgcttcaatgccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaa |
11732611 |
T |
|
| Q |
340 |
tggatcagcttccacgtctcaaggttctccaacttcgtagattggactctttgaaattcattgca |
404 |
Q |
| |
|
| ||||| |||||| |||||||| |||||| ||||| || ||||| ||| | ||||||||||| |
|
|
| T |
11732612 |
tcgatcaccttccaaatctcaaggctctccatcttcggaggttggaatctcttgaattcattgca |
11732676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 11732296 - 11732366
Alignment:
| Q |
51 |
catcttgaacaagtcaagttctctccatcaaaggaagctgccaaagatgaatttttgaaaaataaacaaca |
121 |
Q |
| |
|
||||| || |||||||||||||||||||| || ||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
11732296 |
catctggagcaagtcaagttctctccatccaacgaagcggctaaagatgaatttgtgaaaaataaacaaca |
11732366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 432 - 580
Target Start/End: Original strand, 11732725 - 11732876
Alignment:
| Q |
432 |
ttctttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaag---acatatcggaaaaagatagaccatctttca |
528 |
Q |
| |
|
||||||||| ||||||||| |||||||| || ||||||||||| || |||||||||||||||| | | | || | ||||| | |||||||||||| |
|
|
| T |
11732725 |
ttctttccagccttgaaggagcttacaatttcggattgtcctaaactcgaaagttggtgggaaaatgataagacattgaaaaaaaacagaccatctttcc |
11732824 |
T |
|
| Q |
529 |
gttgcatttcaaagctaaatatccaatattgtcctcagttagcttgcatgcc |
580 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||| | ||||| ||| |||| |
|
|
| T |
11732825 |
cttgcatttcaaaactaaatatccgatgttgtcctaaattagcatgcgtgcc |
11732876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 491
Target Start/End: Complemental strand, 11973793 - 11973736
Alignment:
| Q |
434 |
ctttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgg |
491 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||||||||||||| || || |||||| |
|
|
| T |
11973793 |
ctttccatctttggaggaactcacaatctcagattgtcctaatctcaagaggtggtgg |
11973736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University