View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_high_8 (Length: 380)
Name: NF18208_high_8
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 30077690 - 30077344
Alignment:
| Q |
20 |
aaatatagtcttgttgagaattattttagttagagatcaaactagggtaatattttaatgattaggtttaatatggggaagaatgatatttctatttggt |
119 |
Q |
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| T |
30077690 |
aaatatagtct-gttgagaattattttagttagagatcaaactagggtaatattttaatgattaggtttaatatggggaagaatgatatttctatttggt |
30077592 |
T |
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| Q |
120 |
tttatatatgcaagggaaatgggaaggnnnnnnnnttgttagtgttaggtgtttaattatatgtaatttttcatagggatgtgttgattagtatttcata |
219 |
Q |
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| T |
30077591 |
tttatatatgcaag---aatgggaaggaaaaaaa-ttgttagtgttaggtgtttaattatatgtaatttttcatagggatgtgttgattagtatttcata |
30077496 |
T |
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| Q |
220 |
tataagatcaattcaattcaagtaaatgttgttttctactttatgaaattgttcgttta-ttgttgtacaaaaactttgtctaacaccactatagcgaca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
30077495 |
tataagatcaattcaattcaagtaaatgttgttttctactttatgaaattgttcgtttatttgttgtacaaattttttgtctaacaccactatagcgaca |
30077396 |
T |
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| Q |
319 |
ttagtgtagttcatgggagtgagattattcttactaccccaattgccctatg |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30077395 |
ttagtgtagttcatgggagtgagattattcttactaccccaattgccctatg |
30077344 |
T |
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