View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_high_9 (Length: 326)
Name: NF18208_high_9
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_high_9 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold2126 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 28964079 - 28964391
Alignment:
| Q |
1 |
ccaaggaacgagagtcggcttccttaacttaagtccattgttcctcagtagctcagtggtagagcggtcggctgttaaccgattggtcgtaggttcaaat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28964079 |
ccaaagaacgagagtcggcttccttaacttaagtccattgttcctcagtagctcagtggtagagcggtcggctgttaaccgattggtcgtaggttcaaat |
28964178 |
T |
|
| Q |
101 |
ccttcttaaggagaattttgagttatcgcttttctgacctagtga-ccctgtccttcccctgagtttctaaactagcagaatagtgggacatcaaaggtg |
199 |
Q |
| |
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||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28964179 |
cctacttgaggagaattttgagttatcgcttttctgacctagtgacccctgtccttcccctgagtttctaaactagcagaatagtgggacatcaaaggtg |
28964278 |
T |
|
| Q |
200 |
gaaagtttattgtg-nnnnnnnctagttgagaccatgaaaagaacctgcatattagaacccaatatgaggtatttaagtagaacattcctattacataga |
298 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28964279 |
gaaagtttattgtgttttttttctagttgagaccatgaaaagaacctgcatgttagaatccaatatgaggtatttaagtagaacattcctattacataga |
28964378 |
T |
|
| Q |
299 |
taccttactaatt |
311 |
Q |
| |
|
||||||||||||| |
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|
| T |
28964379 |
taccttactaatt |
28964391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 29325931 - 29325619
Alignment:
| Q |
1 |
ccaaggaacgagagtcggcttccttaacttaagtccattgttcctcagtagctcagtggtagagcggtcggctgttaaccgattggtcgtaggttcaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
29325931 |
ccaaggaacgagagtcggcttccttaacttaagtccattgttccttagtagctcaggggtagagtggtcggctgttaaccgattggtcgtaggttcaaat |
29325832 |
T |
|
| Q |
101 |
ccttcttaaggagaattttgagttatcgcttttctgacctagtgaccctgtccttcccctgagtttctaaactagcagaatagtgggacatcaaaggtgg |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29325831 |
ccttcttgaggagaattttgagttatcgcttttctgacctagtgaccctgtccttcccctgagtttctaaactagcagaatagtgggacatcaaaggtgg |
29325732 |
T |
|
| Q |
201 |
aaagtttattgtg--nnnnnnnctagttgagaccatgaaaagaacctgcatattagaacccaatatgaggtatttaagtagaacattcctattacataga |
298 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
29325731 |
aaagtttattgtgtttttttttctagttgagacaatgaaaagaacctgcatgttagaacccaatatgaggtatttaagtagaacattcttattacataga |
29325632 |
T |
|
| Q |
299 |
taccttactaatt |
311 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29325631 |
taccttactaatt |
29325619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 4026663 - 4026758
Alignment:
| Q |
6 |
gaacgagagtcggcttccttaacttaagtccattgttcctcagtagctcagtggtagagcggtcggctgttaaccgattggtcgtaggttcaaatc |
101 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| ||| || |||||||||||||||||||| ||||| || ||||| ||| | | ||||||||||||| |
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|
| T |
4026663 |
gaacgagagtcgacttccttaatttaagtcctttgctcgtcagtagctcagtggtagagtggtcgactattaactgatcgcttgtaggttcaaatc |
4026758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 32632056 - 32632008
Alignment:
| Q |
48 |
gtagctcagtggtagagcggtcggctgttaaccgattggtcgtaggttc |
96 |
Q |
| |
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|||||||||| |||||||||||||| ||||||| ||||||| ||||||| |
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| T |
32632056 |
gtagctcagtagtagagcggtcggcggttaaccaattggtcataggttc |
32632008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 35090278 - 35089967
Alignment:
| Q |
1 |
ccaaggaacgagagtcggcttccttaacttaagtccattgttcctcagtagctcagtggtagagcggtcggctgttaaccgattggtcgtaggttcaaat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35090278 |
ccaaagaacgagagtcggcttccttaacttaagtccattgttactcagtagctcagtggtagagcggtcggctgttaaccgattggtcgtagattcaaat |
35090179 |
T |
|
| Q |
101 |
ccttcttaaggagaattttgagttatcgcttttctgacctagtgaccc-tgtccttcccctgagtttctaaactagcagaatagtgggacatcaaaggtg |
199 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35090178 |
cctacttgaggagaattttgagttatcgcttttctgacgtagtgacccatgtccttcccctgagtttgtaaactagcagaatagtgggacatcaaaggtg |
35090079 |
T |
|
| Q |
200 |
gaaagtttattgtgnnnnnnnctagttgagaccatgaaaagaacctgcatattagaacccaatatgaggtatttaagtagaacattcctattacatagat |
299 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35090078 |
gaaagtttattgtgtttttttctagttgagaccatgaaaagaacctgcatgttagaacccaatatgaggtatttaagtagaacattcctattacatagat |
35089979 |
T |
|
| Q |
300 |
accttactaatt |
311 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35089978 |
accttactaatt |
35089967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 496851 - 496786
Alignment:
| Q |
38 |
ttgttcctcagtagctcagtggtagagcggtcggctgttaaccgattggtcgtaggttcaaatcct |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
496851 |
ttgttcctcagtagctcagtggtagagcggtcggctgttaaccgattggtcgtaggttcgaatcct |
496786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 31243975 - 31244054
Alignment:
| Q |
232 |
catgaaaagaacctgcatattagaacccaatatgaggtatttaagtagaacattcctattacatagataccttactaatt |
311 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
31243975 |
catgaaaagaacctgcatgttaggacccaatatgatgtatttaagtagaacattcctattacatagataccgttctaatt |
31244054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 34087837 - 34087771
Alignment:
| Q |
227 |
gagaccatgaaaagaacctgcatattagaacccaatatgaggtatttaagtagaacattcctattac |
293 |
Q |
| |
|
||||||||||||||| ||||||| |||| || ||||||||||| ||||| ||||| ||||||||||| |
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|
| T |
34087837 |
gagaccatgaaaagagcctgcatgttaggacacaatatgaggtgtttaattagaatattcctattac |
34087771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 180951 - 181016
Alignment:
| Q |
38 |
ttgttcctcagtagctcagtggtagagcggtcggctgttaaccgattggtcgtaggttcaaatcct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |
|
|
| T |
180951 |
ttgttcctcagtagctcagtggtagagcggtcggctgttaactgactggtcgtaggttcgaatcct |
181016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2126 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold2126
Description:
Target: scaffold2126; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 198 - 122
Alignment:
| Q |
38 |
ttgttcctcagtagctcagtggtagagcggtcggctgttaaccgattggtcgtaggttcaaatccttcttaaggaga |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| |||||| ||| |||||| |
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|
| T |
198 |
ttgttcctcagtagctcagcggtagagcggtcggctgttaactgactggtcgtaggttcgaatcctacttgaggaga |
122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 34661864 - 34661807
Alignment:
| Q |
38 |
ttgttcctcagtagctcagtggtagagcggtcggctgttaaccgattggtcgtaggtt |
95 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
34661864 |
ttgttcctcagtagctcagtggtagagtggtcggctgttaaccaattgatcgtaggtt |
34661807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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