View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18208_low_1 (Length: 845)

Name: NF18208_low_1
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18208_low_1
NF18208_low_1
[»] chr5 (26 HSPs)
chr5 (419-835)||(30071704-30072116)
chr5 (126-336)||(30071386-30071598)
chr5 (126-316)||(30005405-30005598)
chr5 (477-640)||(3040218-3040379)
chr5 (128-230)||(30045558-30045661)
chr5 (13-89)||(30071281-30071357)
chr5 (132-230)||(29990352-29990450)
chr5 (478-637)||(30735282-30735439)
chr5 (477-641)||(40519168-40519329)
chr5 (13-89)||(30005627-30005703)
chr5 (13-89)||(29990485-29990561)
chr5 (467-641)||(30700827-30700999)
chr5 (477-637)||(25493808-25493966)
chr5 (13-89)||(29949322-29949398)
chr5 (13-89)||(29943654-29943730)
chr5 (13-89)||(29962880-29962956)
chr5 (13-89)||(29999189-29999265)
chr5 (13-89)||(30011842-30011918)
chr5 (16-89)||(30045454-30045527)
chr5 (126-241)||(29999048-29999160)
chr5 (480-533)||(24402035-24402088)
chr5 (481-641)||(20359904-20360064)
chr5 (126-242)||(29943509-29943625)
chr5 (508-640)||(34280064-34280194)
chr5 (321-357)||(30071609-30071645)
chr5 (599-640)||(24402154-24402195)
[»] chr1 (14 HSPs)
chr1 (477-640)||(35413015-35413176)
chr1 (481-640)||(29657357-29657514)
chr1 (477-640)||(10061581-10061738)
chr1 (477-637)||(35149625-35149783)
chr1 (480-608)||(43537135-43537261)
chr1 (477-624)||(26469933-26470078)
chr1 (448-603)||(21540036-21540187)
chr1 (481-599)||(23906605-23906721)
chr1 (480-565)||(11470016-11470101)
chr1 (477-543)||(49313596-49313662)
chr1 (578-637)||(49401988-49402047)
chr1 (579-640)||(44958465-44958524)
chr1 (578-640)||(48852731-48852793)
chr1 (592-641)||(34475808-34475857)
[»] chr2 (19 HSPs)
chr2 (477-640)||(20142957-20143118)
chr2 (477-635)||(13716673-13716829)
chr2 (457-643)||(19945679-19945861)
chr2 (493-640)||(14131161-14131306)
chr2 (493-634)||(27007174-27007313)
chr2 (477-605)||(37714412-37714538)
chr2 (458-640)||(3167868-3168045)
chr2 (477-608)||(38320190-38320319)
chr2 (481-640)||(32975978-32976137)
chr2 (457-572)||(35457368-35457484)
chr2 (477-552)||(37899547-37899622)
chr2 (477-641)||(27407411-27407572)
chr2 (477-621)||(31645074-31645217)
chr2 (481-633)||(4434290-4434443)
chr2 (557-640)||(31264827-31264908)
chr2 (578-642)||(37899469-37899533)
chr2 (477-564)||(24183960-24184047)
chr2 (614-648)||(24184084-24184118)
chr2 (527-620)||(31845453-31845544)
[»] chr6 (6 HSPs)
chr6 (477-639)||(32871711-32871872)
chr6 (477-642)||(6784658-6784821)
chr6 (477-640)||(34713490-34713651)
chr6 (477-638)||(2130452-2130611)
chr6 (481-622)||(28867178-28867317)
chr6 (524-642)||(3855692-3855807)
[»] chr8 (8 HSPs)
chr8 (477-644)||(38585042-38585207)
chr8 (467-640)||(29414361-29414532)
chr8 (515-638)||(5718407-5718528)
chr8 (518-638)||(25124400-25124518)
chr8 (477-532)||(29543676-29543731)
chr8 (480-639)||(33543341-33543494)
chr8 (481-638)||(24068076-24068231)
chr8 (493-574)||(26415557-26415638)
[»] chr3 (10 HSPs)
chr3 (493-624)||(26442954-26443083)
chr3 (493-642)||(18271919-18272066)
chr3 (480-642)||(1632801-1632960)
chr3 (481-640)||(45852892-45853049)
chr3 (480-640)||(2671895-2672053)
chr3 (481-607)||(34905839-34905963)
chr3 (508-640)||(31192079-31192209)
chr3 (481-532)||(10593524-10593575)
chr3 (584-640)||(1713936-1713992)
chr3 (467-525)||(3169319-3169377)
[»] chr7 (12 HSPs)
chr7 (493-640)||(46413701-46413849)
chr7 (477-642)||(23611706-23611868)
chr7 (481-608)||(21882759-21882884)
chr7 (481-619)||(22631473-22631609)
chr7 (481-641)||(20125583-20125741)
chr7 (477-572)||(46297602-46297697)
chr7 (481-565)||(24250485-24250569)
chr7 (481-640)||(8123684-8123841)
chr7 (481-640)||(19511403-19511560)
chr7 (507-608)||(1985025-1985124)
chr7 (477-533)||(44600997-44601053)
chr7 (481-559)||(23730540-23730618)
[»] chr4 (16 HSPs)
chr4 (498-637)||(42504155-42504292)
chr4 (457-639)||(37762776-37762956)
chr4 (481-641)||(5288515-5288673)
chr4 (480-647)||(24060568-24060731)
chr4 (481-565)||(25817658-25817742)
chr4 (488-574)||(19482518-19482604)
chr4 (498-623)||(30220711-30220832)
chr4 (493-574)||(29065300-29065381)
chr4 (485-533)||(41545412-41545460)
chr4 (583-640)||(19663375-19663432)
chr4 (578-637)||(19663274-19663333)
chr4 (578-632)||(19482801-19482855)
chr4 (477-574)||(2765390-2765487)
chr4 (504-642)||(16528579-16528718)
chr4 (480-531)||(42108751-42108802)
chr4 (477-534)||(13218444-13218501)
[»] scaffold0194 (1 HSPs)
scaffold0194 (525-640)||(27067-27180)
[»] scaffold0018 (1 HSPs)
scaffold0018 (477-574)||(69947-70044)
[»] scaffold0122 (1 HSPs)
scaffold0122 (457-605)||(18605-18749)


Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 419 - 835
Target Start/End: Original strand, 30071704 - 30072116
Alignment:
Q  419 catttattagtcaacctactcccgcaattataaatgatcattgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaat 518  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  | ||||||||||| ||||||||||||||||||||||||||||||    
T  30071704 catttattagtcaacctactcccgcaattataaatgagcattgctatttatcta--aagagtttttatctagaatttaacaagaaaaggtctcaaccaat 30071801  T
Q  519 taaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaatttt 618  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  30071802 taaatttattatttgttggaaatcatggaaggtagtggtgtgtaattgaggaaaggag--ttagcaaatacattgtcttaaaattttcttcataaatttt 30071899  T
Q  619 gtcactctatctatcatttcccattataaatgatgattaattttgtttactttacatatgttaatgcacaatttctactcactctcataagactgaacca 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  30071900 gtcactctatctatcatttcccattataaatgatgattaattttgtttactttacatatgttaatgcacaatttctactcactctcataaggttgaacca 30071999  T
Q  719 ttcttctcccacggtcagtgattctcaaatctcaatgggtatccattattcttaccatgtcattttacatcttcctctaaatcgataactacaaacctcc 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072000 ttcttctcccacggtcagtgattctcaaatctcaatgggtatccattattcttaccatgtcattttacatcttcctctaaatcgataactacaaacctcc 30072099  T
Q  819 accttgcatattgatga 835  Q
    |||||||||||||||||    
T  30072100 accttgcatattgatga 30072116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 126 - 336
Target Start/End: Original strand, 30071386 - 30071598
Alignment:
Q  126 ggatgtaagaagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtt 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30071386 ggatgtaagtagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtt 30071485  T
Q  226 tggtttgggtgaagtacgtaacaaggttgaagactatacaacaacaagttgatctcatattatcttgca-acggtggtgtacgtgtttgg-ttgtatatg 323  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |  ||||||||||||||||||| ||||||||     
T  30071486 tggtttggctgaagtacgtaacaaggttgaagactatacaactacaagttgatctcttattatcttgaagccggtggtgtacgtgtttggtttgtatatc 30071585  T
Q  324 tagtgagatattt 336  Q
    |||||||||||||    
T  30071586 tagtgagatattt 30071598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 126 - 316
Target Start/End: Complemental strand, 30005598 - 30005405
Alignment:
Q  126 ggatgtaagaagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtt 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30005598 ggatgtaagtagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatgctt 30005499  T
Q  226 tggtttgggtgaagtacgtaacaaggttgaagac--tatacaacaacaagttgatctcatattatcttgcaa-cggtggtgtacgtgtttggtt 316  Q
    |||||||| |||||||||||||||||||||||||  |||| |||  |||||| |||||| ||||||||| || |||||||||||||||||||||    
T  30005498 tggtttggctgaagtacgtaacaaggttgaagactatatagaactccaagttaatctcagattatcttgaaaccggtggtgtacgtgtttggtt 30005405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 477 - 640
Target Start/End: Complemental strand, 3040379 - 3040218
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||||||||||| || || |||||| |||||||| |||||||||||| |||||||  |    
T  3040379 gagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatggtgtgtaattaaggaaag--g 3040282  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
     ||||||||||||| |||||| |||||||||| ||||||||||||||| | ||||| |||||||    
T  3040281 tgttagcaaatacactgtcttaaaattttcttgataaattttgtcactgtgtctattatttccc 3040218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 30045558 - 30045661
Alignment:
Q  128 atgtaagaagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctac-aatgaatggttt 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||||||     
T  30045558 atgtaagaagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaatattattgttgttactgcaaaagacatgtctacaaatgaatggttg 30045657  T
Q  227 ggtt 230  Q
    ||||    
T  30045658 ggtt 30045661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 30071281 - 30071357
Alignment:
Q  13 gattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgatggtggacctggtgg 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30071281 gattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgatggtggacctggtgg 30071357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 29990450 - 29990352
Alignment:
Q  132 aagaagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtttggtt 230  Q
    ||||| |||||||||||||||||  |||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29990450 aagaatagtttgaatagaaagtatgtgaaagtgaagagaaggaaagcaaatattgttgttgttactgcaaaagacatgtctacaatgaatggtttggtt 29990352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 478 - 637
Target Start/End: Complemental strand, 30735439 - 30735282
Alignment:
Q  478 agtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggaga 577  Q
    ||||||||| |||||| || |||||||| ||||||| |||||||||||||||||||  |||||||| |||||||| || || |||||| || |||  ||     
T  30735439 agtttttattaagaatatatcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggaggtaatgctgggtaattaagaaaa--agt 30735342  T
Q  578 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcattt 637  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||| || |||||||||    
T  30735341 gttagcaaatacactgttttgaaattttcttgataaattttgtcactgtacctatcattt 30735282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 477 - 641
Target Start/End: Original strand, 40519168 - 40519329
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    ||||||||||||||||||||  ||||| | ||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||| || |||  |     
T  40519168 gagtttttatcaagaatttattaagaataagtctcaaccaattaaatttgttatttgatggaaatca-gggaggtaatgatgtgtaattaagaaaa--aa 40519264  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 641  Q
      || ||||||||| |||||| |||||||||| |||| |||||||||| ||| ||||||||||||    
T  40519265 tattggcaaatacactgtcttaaaattttcttgataatttttgtcactgtatttatcatttccca 40519329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 30005703 - 30005627
Alignment:
Q  13 gattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgatggtggacctggtgg 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  30005703 gattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgttgatggacctggtgg 30005627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 29990561 - 29990485
Alignment:
Q  13 gattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgatggtggacctggtgg 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  29990561 gattgaagtgttctatgtggaagtttgcctaatatgtgaagatttcctattattggtagtgttggtggacatggtgg 29990485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 467 - 641
Target Start/End: Complemental strand, 30700999 - 30700827
Alignment:
Q  467 tatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattg 566  Q
    ||||||||  ||||||||||||| ||| ||  ||||||| ||||||| |||||||||||||||||||  | |||| | |||||||| || |||||||||     
T  30700999 tatttatctagagtttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatgttgtgtaatta 30700900  T
Q  567 aggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 641  Q
    || ||||  | ||||||||||||| |||||| ||||||| || |||||||||||||||  | |||||||||||||    
T  30700899 agaaaag--gtgttagcaaatacactgtcttaaaatttttttgataaattttgtcactgcacctatcatttccca 30700827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 477 - 637
Target Start/End: Original strand, 25493808 - 25493966
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||||||| | |||||||| |||||| ||||||||||||||| |||||  |||||||  ||||||| |||||||||||| ||||||   |    
T  25493808 gagtttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaatggtgtgtaattaaggaaa--tg 25493905  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcattt 637  Q
      ||| |||||| | ||||||||||||||||  ||| || |||||||| ||||||||||||    
T  25493906 tattaacaaatatactgtcttgaaattttctggatacatgttgtcactgtatctatcattt 25493966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 29949398 - 29949322
Alignment:
Q  13 gattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgatggtggacctggtgg 89  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| |||||||||||||||    
T  29949398 gattgaagtgttctatgtggaagtttacctaataggtgaaggtttccaattattggtagtgttggtggacctggtgg 29949322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 29943730 - 29943654
Alignment:
Q  13 gattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgatggtggacctggtgg 89  Q
    |||||||||||||||||||||||  ||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  29943730 gattgaagtgttctatgtggaagggtgcctaatatgtggaggtttccgattattggtagtgatggtggacctggtgg 29943654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 29962956 - 29962880
Alignment:
Q  13 gattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgatggtggacctggtgg 89  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||| |||||||||||||||    
T  29962956 gattgaagtgttctatgtggaagtttacctaacatgtgaaggtttcctattattggtagtgttggtggacctggtgg 29962880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 29999265 - 29999189
Alignment:
Q  13 gattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgatggtggacctggtgg 89  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||| |||||||||||||||    
T  29999265 gattgaagtgttctatgtggaagtttacctaacatgtgaaggtttcctattattggtagtgttggtggacctggtgg 29999189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 30011842 - 30011918
Alignment:
Q  13 gattgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgatggtggacctggtgg 89  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||| |||||||||||||||    
T  30011842 gattgaagtgttctatgtggaagtttacctaacatgtgaaggtttcctattattggtagtgttggtggacctggtgg 30011918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 30045454 - 30045527
Alignment:
Q  16 tgaagtgttctatgtggaagtttgcctaatatgtgaagatttccaattattggtagtgatggtggacctggtgg 89  Q
    ||||||||||||||||||||  |||||||||||||||| || || ||||||||||||| |||||||||||||||    
T  30045454 tgaagtgttctatgtggaagggtgcctaatatgtgaaggttccctattattggtagtgttggtggacctggtgg 30045527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 29999160 - 29999048
Alignment:
Q  126 ggatgtaagaagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtt 225  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||| |||   | ||| |||||||    ||||||||||||| | |||||||||| ||    
T  29999160 ggatgtaagaagagtttgaataaaaggtatatgaaagtgaagagaaggaaatagagcatagttgttg---ctgcaaaagacatgaccacaatgaatgatt 29999064  T
Q  226 tggtttgggtgaagta 241  Q
    |||||||| |||||||    
T  29999063 tggtttggctgaagta 29999048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 533
Target Start/End: Original strand, 24402035 - 24402088
Alignment:
Q  480 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttg 533  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||||||||||||    
T  24402035 tttttatcaagaatttatcaagaaaagatctcaaccaaataaatttgttatttg 24402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 481 - 641
Target Start/End: Original strand, 20359904 - 20360064
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttg--gaaatcatgggaggtagtggtgtgtaattgaggaaaggagag 578  Q
    |||||||||||||| | |||||||| |||||   ||||||||| |||||  | ||   |||||||  |||| || |||||||||||| | |||||| |      
T  20359904 ttttatcaagaattgatcaagaaaatgtctcggtcaattaaatctgttaaattttcctgaaatcaaaggagataatggtgtgtaattaaagaaaggtg-- 20360001  T
Q  579 ttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 641  Q
    |||||||||| |  ||||||||| |||||| ||| | ||||||||||||||||||||||||||    
T  20360002 ttagcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttccca 20360064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 242
Target Start/End: Complemental strand, 29943625 - 29943509
Alignment:
Q  126 ggatgtaagaagagtttgaatagaaagtacatgaaagtgaagagaagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtt 225  Q
    ||||| ||||| |||||| ||| ||| ||  |||||||||||| ||| |||||||  | ||||||| ||  |||| ||||||| ||||||||||||||||    
T  29943625 ggatgcaagaatagtttggataaaaaatatgtgaaagtgaagataaggaaagcaagtactgttgttattgctgcagaagacatctctacaatgaatggtt 29943526  T
Q  226 tggtttgggtgaagtac 242  Q
    |||||||| | ||||||    
T  29943525 tggtttggatcaagtac 29943509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 508 - 640
Target Start/End: Complemental strand, 34280194 - 34280064
Alignment:
Q  508 tctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttct 607  Q
    |||||| |||||||||||||||||||  |||||| | || || || |||| ||||||| |||||||  |  ||| |||||||| || ||| |||| || |    
T  34280194 tctcaatcaattaaatttgttatttggcggaaattaaggaagataatggtatgtaattaaggaaagatg--ttaacaaatacactgacttaaaatattat 34280097  T
Q  608 tcataaattttgtcactctatctatcatttccc 640  Q
    | ||||||| ||||||| |||||||||||||||    
T  34280096 tgataaattctgtcactgtatctatcatttccc 34280064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 30071609 - 30071645
Alignment:
Q  321 atgtagtgagatatttatggcggccatactatatact 357  Q
    ||||| |||||||||||||||||||||||||||||||    
T  30071609 atgtattgagatatttatggcggccatactatatact 30071645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 640
Target Start/End: Original strand, 24402154 - 24402195
Alignment:
Q  599 aaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    |||||||||| ||||||||||||| | |||||||||||||||    
T  24402154 aaattttcttgataaattttgtcattgtatctatcatttccc 24402195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 8e-45; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 477 - 640
Target Start/End: Original strand, 35413015 - 35413176
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| |||||||  |    
T  35413015 gagtttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaag--g 35413112  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
     |||| |||||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||    
T  35413113 tgttaacaaatacactctcttgaaattttcttgataaattttgtcattatatctatcatttccc 35413176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 481 - 640
Target Start/End: Original strand, 29657357 - 29657514
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    ||||||||| ||||   ||||||||||||||||||||||||||||||||||||  | ||||||  ||||||| || | ||||||| |||||||| |  ||    
T  29657357 ttttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaatgatatgtaattaaggaaaggtg--tt 29657454  T
Q  581 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  29657455 agcaaatacactgtcttgaaattttcttgataaaatttgtcactgtatctatcatttccc 29657514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 477 - 640
Target Start/End: Original strand, 10061581 - 10061738
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||   ||||||| |||||||| || ||||||||| ||||||   |    
T  10061581 gagtttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaattaaggaaa--tg 10061678  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
     ||||||||||| | ||||||||||||||||| ||||||||||    |||||||||||||||||    
T  10061679 tgttagcaaataaactgtcttgaaattttcttgataaattttg----tctatctatcatttccc 10061738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 477 - 637
Target Start/End: Complemental strand, 35149783 - 35149625
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||||||||| ||||||||  ||| ||||||||||||||||||||||    |||||| ||||| || || ||| ||||| |||||||  |    
T  35149783 gagtttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataattaaggaaag--g 35149686  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcattt 637  Q
     ||||||||||||||| |||||||||||| || ||||||||||||||| || |||||||||    
T  35149685 tgttagcaaatacattctcttgaaatttttttgataaattttgtcactgtacctatcattt 35149625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 480 - 608
Target Start/End: Complemental strand, 43537261 - 43537135
Alignment:
Q  480 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagt 579  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |||||||| |||||||| |||||||||||| | ||||   | ||    
T  43537261 tttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaagaaa--tgtgt 43537164  T
Q  580 tagcaaatacattgtcttgaaattttctt 608  Q
    || |||||||| |||||||||||||||||    
T  43537163 taacaaatacactgtcttgaaattttctt 43537135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 477 - 624
Target Start/End: Original strand, 26469933 - 26470078
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||  || ||||||  | || || |||||||||||| |||||||  |    
T  26469933 gagtttttatcaagaatttatcaagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaaggaaag--g 26470030  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcact 624  Q
     ||||||||||||| ||| || |||||||||| ||||||||| |||||    
T  26470031 tgttagcaaatacactgttttaaaattttcttgataaattttatcact 26470078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 448 - 603
Target Start/End: Original strand, 21540036 - 21540187
Alignment:
Q  448 ataaatgatcattgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatggg 547  Q
    ||||| || ||||||||||||||||    |||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||||  |||||| | |||    
T  21540036 ataaaagagcattgctatttatttaga--gagtttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaaggg 21540133  T
Q  548 aggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaatt 603  Q
    || || ||  |||||||| | |||||  | |||| |||||||| ||||||||||||    
T  21540134 agataatgaagtgtaattaaagaaag--gtgttaacaaatacactgtcttgaaatt 21540187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 481 - 599
Target Start/End: Complemental strand, 23906721 - 23906605
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    |||||||||||||| | |||||||| || ||| ||||||||||||||||||||    |||||| | |||||| |||||||||||| | |||||  | |||    
T  23906721 ttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaatggtgtgtaattaaagaaag--gtgtt 23906624  T
Q  581 agcaaatacattgtcttga 599  Q
    |||||||||||||||||||    
T  23906623 agcaaatacattgtcttga 23906605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 480 - 565
Target Start/End: Original strand, 11470016 - 11470101
Alignment:
Q  480 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaatt 565  Q
    ||||||| ||||||||| ||||||||  ||| ||||||||||||||||||||||  |||||||| |||||||| || |||||||||    
T  11470016 tttttattaagaatttatcaagaaaatatcttaaccaattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaatt 11470101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 543
Target Start/End: Original strand, 49313596 - 49313662
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatca 543  Q
    |||||||||||||||||| | |||||||| |||||||  |||||||||||||||| || ||||||||    
T  49313596 gagtttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgttattagtcggaaatca 49313662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 578 - 637
Target Start/End: Original strand, 49401988 - 49402047
Alignment:
Q  578 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcattt 637  Q
    ||||||||||||||||  ||||||| || || ||||||||||||||| ||||||||||||    
T  49401988 gttagcaaatacattggtttgaaatctttttgataaattttgtcactgtatctatcattt 49402047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 579 - 640
Target Start/End: Complemental strand, 44958524 - 44958465
Alignment:
Q  579 ttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    |||||||||||| | |||| |||||||||| ||| |||||||||  ||||||||||||||||    
T  44958524 ttagcaaatacactctcttcaaattttcttaatacattttgtca--ctatctatcatttccc 44958465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 578 - 640
Target Start/End: Original strand, 48852731 - 48852793
Alignment:
Q  578 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    |||| |||||||||||| || ||| ||| || |||||||||||||||  ||||||||||||||    
T  48852731 gttaacaaatacattgttttaaaaattttttgataaattttgtcactggatctatcatttccc 48852793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 641
Target Start/End: Original strand, 34475808 - 34475857
Alignment:
Q  592 tgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 641  Q
    |||||| |||||||||| ||| ||||||||||| |||| |||||||||||    
T  34475808 tgtcttaaaattttcttaatacattttgtcactgtatccatcatttccca 34475857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 477 - 640
Target Start/End: Original strand, 20142957 - 20143118
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||  |||||||| || ||||| || ||||||||| |||||||  |    
T  20142957 gagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatgatgtgtaattaaggaaag--g 20143054  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
     ||||| ||||||| | ||||||||||||||| ||||||||||||||| |||||||||||||||    
T  20143055 tgttagaaaatacactatcttgaaattttcttgataaattttgtcactgtatctatcatttccc 20143118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 477 - 635
Target Start/End: Complemental strand, 13716829 - 13716673
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||  | ||||||  ||||||| | |||||||||| || ||||  |    
T  13716829 gagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaatagtgtgtaattaagaaaag--g 13716732  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcat 635  Q
     ||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||    
T  13716731 tgttagcaaatacactgttttgaaattttcttgataaattttgtcactgtatctatcat 13716673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 457 - 643
Target Start/End: Complemental strand, 19945861 - 19945679
Alignment:
Q  457 cattgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtgg 556  Q
    ||||||||||||||||    |||||||||| |||||||||  || |||| |||||   |||||||||||||||||||  |||||| | |||||||| |||    
T  19945861 cattgctatttatttaga--gagtttttattaagaatttattaaaaaaatgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaatgg 19945764  T
Q  557 tgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccatt 643  Q
    ||||||||| ||||||| | | ||| |||||||| |||||| |||||||||| ||||||||||||||| |||||||||||| |||||    
T  19945763 tgtgtaattaaggaaag-ata-ttaacaaatacactgtcttaaaattttcttgataaattttgtcactgtatctatcattttccatt 19945679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 493 - 640
Target Start/End: Original strand, 14131161 - 14131306
Alignment:
Q  493 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacatt 592  Q
    |||| |||||||| ||||  ||||||||||| |||||||||  |||||||| | ||| || |||||||||||| |||||| | |  |||||||||||| |    
T  14131161 tttatcaagaaaatgtctggaccaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaaggaaatgtg--ttagcaaatacact 14131258  T
Q  593 gtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
     |||| |||||||||||||||||||||||||| |||||||||||||||    
T  14131259 atcttaaaattttcttcataaattttgtcactgtatctatcatttccc 14131306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 493 - 634
Target Start/End: Original strand, 27007174 - 27007313
Alignment:
Q  493 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacatt 592  Q
    |||| |||||||  ||||||||||| |||||||||||||||  |||||||| |||||||| | ||||||| || ||||||  || |||| |||||||| |    
T  27007174 tttatcaagaaattgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaa--agtgttaacaaatacact 27007271  T
Q  593 gtcttgaaattttcttcataaattttgtcactctatctatca 634  Q
    ||||| |||||||||| ||||||||||||||| |||||||||    
T  27007272 gtcttaaaattttcttgataaattttgtcactgtatctatca 27007313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 477 - 605
Target Start/End: Original strand, 37714412 - 37714538
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||  ||||| ||||||||||| |||||||||||||||||||||||| |||||||||  |||| || |||||||||||| |||||||  |    
T  37714412 gagtttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatggtgtgtaattaaggaaag--g 37714509  T
Q  577 agttagcaaatacattgtcttgaaatttt 605  Q
     ||||||||||||| || ||| |||||||    
T  37714510 tgttagcaaatacactgccttaaaatttt 37714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 458 - 640
Target Start/End: Original strand, 3167868 - 3168045
Alignment:
Q  458 attgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggt 557  Q
    |||||||||||||||  |  ||||||||| ||||||||   ||||||||||||||||||||||||||| |||||||| ||||||||  | ||||| || |    
T  3167868 attgctatttatttaaaa--agtttttattaagaatttgttaagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgat 3167965  T
Q  558 gtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    |||||||| | |||||  | ||||||||||| | | | |  |||||||||| ||||||||||||||| |||||||||||||||    
T  3167966 gtgtaattaaagaaag--gtgttagcaaatatactatttaaaaattttcttgataaattttgtcact-tatctatcatttccc 3168045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 477 - 608
Target Start/End: Complemental strand, 38320319 - 38320190
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||  ||||||| || ||||||| | ||||||   |    
T  38320319 gagtttttatcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatgatgtgtaaataaggaaa--tg 38320222  T
Q  577 agttagcaaatacattgtcttgaaattttctt 608  Q
     |||| |||||||| |||||| ||||||||||    
T  38320221 tgttatcaaatacactgtcttaaaattttctt 38320190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 481 - 640
Target Start/End: Complemental strand, 32976137 - 32975978
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggt--agtggtgtgtaattgaggaaaggagag 578  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||  | ||||  | |||| ||||||| || ||||  | |    
T  32976137 ttttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaagaaggtaaaatggtatgtaattaagaaaag--gtg 32976040  T
Q  579 ttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    |||| ||||||| ||| ||||||||||||| ||| || |||||  | |||||||||||||||    
T  32976039 ttagtaaatacactgttttgaaattttcttgatacatattgtcgatgtatctatcatttccc 32975978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 457 - 572
Target Start/End: Original strand, 35457368 - 35457484
Alignment:
Q  457 cattgctatttatttat-cag-gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagt 554  Q
    ||||||||||||||||| ||  ||||||||||||||||||||  |||||||||| |||| ||||||||||| ||||||   ||||||||  ||||||| |    
T  35457368 cattgctatttatttatgcatagagtttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaat 35457466  T
Q  555 ggtgtgtaattgaggaaa 572  Q
    ||||||||||| ||||||    
T  35457467 ggtgtgtaattaaggaaa 35457484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 477 - 552
Target Start/End: Complemental strand, 37899622 - 37899547
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggta 552  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||| |||||| | ||||||  |||||||    
T  37899622 gagtttttatcaaaaatttatcaagaaaaggtttcaaccaattaaatttgtgatttgtcgaaaatcaaaggaggta 37899547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 641
Target Start/End: Original strand, 27407411 - 27407572
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||| ||||||||||||| | ||||||||| | ||| |||||||||||||||||||   |||||||| || || || || ||||||||| ||||||   |    
T  27407411 gagtgtttatcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaaggaaa--tg 27407508  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 641  Q
      |||||||||||| | |||| ||||||| ||| |  | ||||||||| ||||||||||||||||    
T  27407509 tattagcaaatacagtatcttaaaattttgttc-ttgagtttgtcactgtatctatcatttccca 27407572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 621
Target Start/End: Complemental strand, 31645217 - 31645074
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaag-gtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagga 575  Q
    |||||||||||||||||||| ||| ||||  |||| |||||||||||||| | |||||  |||||||| |  | ||| || ||||||||| || |||||     
T  31645217 gagtttttatcaagaatttatcaaaaaaaatgtcttaaccaattaaatttttaatttggcggaaatcaagaaacgtaatgatgtgtaattaagaaaagg- 31645119  T
Q  576 gagttagcaaatacattgtcttgaaattttcttcataaattttgtc 621  Q
    | ||||||||||||||| |||| |||||||| | ||||||||||||    
T  31645118 gtgttagcaaatacattctcttaaaattttc-tgataaattttgtc 31645074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 481 - 633
Target Start/End: Original strand, 4434290 - 4434443
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatg---ggaggtagtggtgtgtaattgaggaaaggaga 577  Q
    |||||| ||||||| | |||||||||||| ||  |||||||||||||||||||  | |||||| |   ||||||| |||||||||||| || |||   |     
T  4434290 ttttattaagaattgatcaagaaaaggtcccagtcaattaaatttgttatttgccgaaaatcaagggaggaggtaatggtgtgtaattaagtaaa--tgt 4434387  T
Q  578 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatc 633  Q
    ||| ||||||| ||||| ||||||||||||| ||| | ||||||||| ||| ||||    
T  4434388 gttggcaaatatattgttttgaaattttcttaatacagtttgtcactgtatatatc 4434443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 640
Target Start/End: Original strand, 31264827 - 31264908
Alignment:
Q  557 tgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    ||||||||| ||||||  || ||||||||||||| | |||| ||||||  || ||||||||||||||| |||||||||||||||    
T  31264827 tgtgtaattaaggaaa--agtgttagcaaatacactatcttaaaatttgtttgataaattttgtcactgtatctatcatttccc 31264908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 642
Target Start/End: Complemental strand, 37899533 - 37899469
Alignment:
Q  578 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccat 642  Q
    ||||| |||||||||||||  ||| |||||| ||| ||||||||||| |||||||||||||||||    
T  37899533 gttagtaaatacattgtctaaaaaatttcttgatacattttgtcactgtatctatcatttcccat 37899469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 564
Target Start/End: Original strand, 24183960 - 24184047
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaat 564  Q
    ||||||||||  | |||||| ||||||||||| ||| |||||||||||| |||||||  |||| |||   |||||| |||||||||||    
T  24183960 gagtttttattcataatttatcaagaaaaggtttcagccaattaaatttattatttgccggaactcaatagaggtaatggtgtgtaat 24184047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 614 - 648
Target Start/End: Original strand, 24184084 - 24184118
Alignment:
Q  614 attttgtcactctatctatcatttcccattataaa 648  Q
    ||||||||||| |||||||||||||||||||||||    
T  24184084 attttgtcactgtatctatcatttcccattataaa 24184118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 620
Target Start/End: Original strand, 31845453 - 31845544
Alignment:
Q  527 ttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgt 620  Q
    |||||||| |||||||| | |||||| |||||||||||| ||| |||    ||||||||||||| |||||  |||||||||| ||||| |||||    
T  31845453 ttatttgtcggaaatcaagagaggtaatggtgtgtaattaaggtaag--atgttagcaaatacactgtctaaaaattttcttgataaaatttgt 31845544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 5e-40; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 477 - 639
Target Start/End: Complemental strand, 32871872 - 32871711
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||  |||||||| |||||||| | |||||||||| ||||||  |     
T  32871872 gagtttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaa--aa 32871775  T
Q  577 agttagcaaatacattgtctt-gaaattttcttcataaattttgtcactctatctatcatttcc 639  Q
     ||||| ||||||| |||||| ||||||||||| ||||||||||||| | ||||||||||||||    
T  32871774 tgttagtaaatacactgtcttagaaattttcttgataaattttgtcattgtatctatcatttcc 32871711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 477 - 642
Target Start/End: Complemental strand, 6784821 - 6784658
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    ||||||||||||| |||||| ||| ||||| ||||| ||||||||||||||||||||| |||||||| ||||| || |||||||||||| || ||||  |    
T  6784821 gagtttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatggtgtgtaattaagaaaag--g 6784724  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccat 642  Q
     ||||||||||||| | ||| ||||||||||| ||  ||||||||||| |||||||||||||||||    
T  6784723 tgttagcaaatacactatctcgaaattttcttgatgcattttgtcactatatctatcatttcccat 6784658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 477 - 640
Target Start/End: Original strand, 34713490 - 34713651
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||||||||| |||||||  |||||||| ||||||||||||||||||  | |||||| |||| ||| ||||||||| || || ||||  |    
T  34713490 gagtttttatcaagaatttatcaagaaattgtctcaactaattaaatttgttatttggcgaaaatcaagggatgtaatggtgtgtatttaagaaaag--g 34713587  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
     |||| |||||||| | |||| |||||||||| ||||||||||||||| |||||||||||||||    
T  34713588 tgttaacaaatacactatcttaaaattttcttgataaattttgtcactgtatctatcatttccc 34713651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 477 - 638
Target Start/End: Complemental strand, 2130611 - 2130452
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    ||||||| || || |||||| ||||||||  ||||||||||||||||||||||||||  ||||||||  ||||||  | |||||||||| |||||||  |    
T  2130611 gagttttaataaaaaatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtgattgtgtgtaattaaggaaag--g 2130514  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttc 638  Q
     |||||||||||||  || ||||||||||||| ||||||||| | | | |||||||||||||    
T  2130513 tgttagcaaatacaccgttttgaaattttcttgataaattttatgattatatctatcatttc 2130452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 481 - 622
Target Start/End: Original strand, 28867178 - 28867317
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    |||||||||||||| |  ||||||| || |||| |||||||||||||||||||||||||||||  ||||||| | || ||||||| ||||||   |  ||    
T  28867178 ttttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaatagtatgtaattaaggaaa--tgtttt 28867275  T
Q  581 agcaaatacattgtcttgaaattttcttcataaattttgtca 622  Q
    |||||||||||||||||||||||||||| ||| | |||||||    
T  28867276 agcaaatacattgtcttgaaattttcttgatacaatttgtca 28867317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 524 - 642
Target Start/End: Complemental strand, 3855807 - 3855692
Alignment:
Q  524 ttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcac 623  Q
    ||||||||||  |||||| | |||| ||| |  ||||||||| |||||||| |  ||||||| |||| ||||||||||||||||| ||||||||||||||    
T  3855807 ttgttatttgacggaaattaagggatgtaataatgtgtaattaaggaaaggtg--ttagcaa-tacactgtcttgaaattttcttgataaattttgtcac 3855711  T
Q  624 tctatctatcatttcccat 642  Q
    | |||||||||||||||||    
T  3855710 tgtatctatcatttcccat 3855692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 7e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 477 - 644
Target Start/End: Complemental strand, 38585207 - 38585042
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||||||||||||| |||||||| || ||||  |||||||||||| |||||  ||||||||  ||||||| | |||||||||| | ||||  ||    
T  38585207 gagtttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggtaattgtgtgtaattaaagaaa--ag 38585110  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccatta 644  Q
     ||||||||||||||||  ||||||||||||| ||||||||||||| |  ||||||||||||||||||    
T  38585109 tgttagcaaatacattgctttgaaattttcttgataaattttgtcattggatctatcatttcccatta 38585042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 467 - 640
Target Start/End: Original strand, 29414361 - 29414532
Alignment:
Q  467 tatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattg 566  Q
    ||||||||  ||||||||||||| |||| | |||||||| |||||| ||||||||||||||||||||  | |||||| || ||||| |||||| |||||     
T  29414361 tatttatctagagtttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatggtgtttaatta 29414460  T
Q  567 aggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    |||||||  | |||| ||||| || ||| ||||||||||||| ||| ||||| |||   |||||||||||||||    
T  29414461 aggaaag--gtgttaacaaatgcactgttttgaaattttcttgatatattttatcaaggtatctatcatttccc 29414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 515 - 638
Target Start/End: Complemental strand, 5718528 - 5718407
Alignment:
Q  515 caattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaa 614  Q
    ||||||||||| |||||||| |||||||| || ||||| |||||||||||| ||||||   | ||||||||||||| |||||| |||||||||| ||| |    
T  5718528 caattaaatttattatttgtcggaaatcaaggaaggtaatggtgtgtaattaaggaaa--tgtgttagcaaatacactgtcttaaaattttcttgatata 5718431  T
Q  615 ttttgtcactctatctatcatttc 638  Q
     ||||||| | |||||||||||||    
T  5718430 gtttgtcattgtatctatcatttc 5718407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 518 - 638
Target Start/End: Original strand, 25124400 - 25124518
Alignment:
Q  518 ttaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattt 617  Q
    ||||| ||||||||||  |||||||| | ||| || || ||||||||| || |||||    ||| |||||||| ||||||||||||||||| ||||||||    
T  25124400 ttaaagttgttatttggcggaaatcaagagagataatgatgtgtaattaagaaaaggta--ttaacaaatacactgtcttgaaattttcttgataaattt 25124497  T
Q  618 tgtcactctatctatcatttc 638  Q
    ||||||| |||||||||||||    
T  25124498 tgtcactgtatctatcatttc 25124518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 477 - 532
Target Start/End: Complemental strand, 29543731 - 29543676
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttattt 532  Q
    ||||||||||||| |||||| ||||||||  |||||||||||||||||||||||||    
T  29543731 gagtttttatcaaaaatttatcaagaaaatatctcaaccaattaaatttgttattt 29543676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 480 - 639
Target Start/End: Original strand, 33543341 - 33543494
Alignment:
Q  480 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagt 579  Q
    |||||||||| ||||||  || |||| |||||||||||| ||||||||||||||   ||||||| ||||| || || ||||||||| |  ||||| |  |    
T  33543341 tttttatcaaaaatttataaa-aaaatgtctcaaccaataaaatttgttatttggctgaaatcaagggagataatg-tgtgtaattaaaaaaaggtg--t 33543436  T
Q  580 tagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcc 639  Q
    || |||||| | |||||||| |||||||| |||||||||||||   ||||||||||||||    
T  33543437 taacaaatatactgtcttgatattttcttgataaattttgtca--gtatctatcatttcc 33543494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 481 - 638
Target Start/End: Complemental strand, 24068231 - 24068076
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    |||||||||||||| | | |||||| |||||| ||||||||||||||||||||    ||||||  ||||||  |||||||||||| |||||||    |||    
T  24068231 ttttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttatttg-ccaaaatcaaaggaggtgatggtgtgtaattaaggaaag--atgtt 24068135  T
Q  581 agcaaataca-ttgtcttgaaattttcttcataaattttgtcactctatctatcatttc 638  Q
    || |||||||   ||||| | |||||||| ||| | ||||||||| |||||||||||||    
T  24068134 aggaaatacagaagtcttaacattttcttaatacagtttgtcactgtatctatcatttc 24068076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 574
Target Start/End: Original strand, 26415557 - 26415638
Alignment:
Q  493 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagg 574  Q
    |||| |||||||||||||||||||||||||||| |||||||  |||||| |   ||| || || ||||||||| ||||||||    
T  26415557 tttatcaagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaagg 26415638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 7e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 493 - 624
Target Start/End: Original strand, 26442954 - 26443083
Alignment:
Q  493 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacatt 592  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||| |||||||| |||||||||||| |  ||||  | |||| |||||||| |    
T  26442954 tttatcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaacaaaag--gtgttaccaaatacact 26443051  T
Q  593 gtcttgaaattttcttcataaattttgtcact 624  Q
    |||||||||||||||| |||||||||||||||    
T  26443052 gtcttgaaattttcttgataaattttgtcact 26443083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 493 - 642
Target Start/End: Complemental strand, 18272066 - 18271919
Alignment:
Q  493 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacatt 592  Q
    |||| ||||||||  ||||||||||||||||||||||||||  ||||||||  ||||||| |||||||||||| | |||||  | ||||||||||||  |    
T  18272066 tttatcaagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaag--gtgttagcaaatactct 18271969  T
Q  593 gtcttgaaattttcttcataaattttgtcactctatctatcatttcccat 642  Q
     |||| |||||||||| ||||||||||||||| |||||||||||| ||||    
T  18271968 atcttaaaattttcttgataaattttgtcactatatctatcattttccat 18271919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 480 - 642
Target Start/End: Original strand, 1632801 - 1632960
Alignment:
Q  480 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagt 579  Q
    |||||||||| |||| | |||||||| |||||||| |||||||||||||||||   ||||||||  ||||||| |||||||||||| | |||| | |  |    
T  1632801 tttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaatggtgtgtaattaaagaaacgtg--t 1632897  T
Q  580 tagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccat 642  Q
    || |||||||| ||||||| |||||| || ||||||||||||||| |||||||||||||||||    
T  1632898 taacaaatacactgtcttggaatttttttgataaattttgtcactgtatctatcatttcccat 1632960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 481 - 640
Target Start/End: Complemental strand, 45853049 - 45852892
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    |||||||||||||| | |||||||| ||||||||||||||||||| ||||||| | | ||||| ||||| || || | ||||||| || ||||  | |||    
T  45853049 ttttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatttgcttgcaatcaagggagataatgatatgtaattaagaaaag--gtgtt 45852952  T
Q  581 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    ||||||||||  ||||| |||||||||| ||| | ||||||||| |||||||||||||||    
T  45852951 agcaaatacacggtcttaaaattttcttgatacagtttgtcactttatctatcatttccc 45852892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 480 - 640
Target Start/End: Original strand, 2671895 - 2672053
Alignment:
Q  480 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagt 579  Q
    ||||||||||||||| | ||||||||||| ||| |||||||||||||||||| | || ||||||  |||| || || ||||||||| |||||||    ||    
T  2671895 tttttatcaagaattgatcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaag--atgt 2671992  T
Q  580 tagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    || |||||||| |||||| |||||||||| ||| ||||||||||| |||| | ||||||||    
T  2671993 taacaaatacactgtcttaaaattttcttgatacattttgtcactttatcaagcatttccc 2672053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 607
Target Start/End: Original strand, 34905839 - 34905963
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    |||||||||||||| |  ||||||| |||||| ||| |||||||||||||||||   ||||||  ||||||| || ||| ||||| |||||||  | |||    
T  34905839 ttttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatgatgtataattaaggaaag--gtgtt 34905936  T
Q  581 agcaaatacattgtcttgaaattttct 607  Q
    |||||||||| |||||| |||||||||    
T  34905937 agcaaatacactgtcttaaaattttct 34905963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 508 - 640
Target Start/End: Original strand, 31192079 - 31192209
Alignment:
Q  508 tctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttct 607  Q
    |||||| |||||||||||||||||| ||| |||| | | ||| || | |||||||||| ||||||| | | |||||||||||  |||||| |||||||||    
T  31192079 tctcaatcaattaaatttgttatttattgaaaattaagagagataatagtgtgtaattaaggaaag-ata-ttagcaaataccctgtcttaaaattttct 31192176  T
Q  608 tcataaattttgtcactctatctatcatttccc 640  Q
    | ||| | ||| ||||| |||||||||||||||    
T  31192177 tgatacagtttatcactgtatctatcatttccc 31192209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 481 - 532
Target Start/End: Complemental strand, 10593575 - 10593524
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttattt 532  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  10593575 ttttatcaagaatttatccagaaaatgtctcaaccaattaaatttgttattt 10593524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 640
Target Start/End: Complemental strand, 1713992 - 1713936
Alignment:
Q  584 aaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    ||||||| ||||||||||||||| | ||||||||| ||||| ||| |||||||||||    
T  1713992 aaatacactgtcttgaaattttcctaataaattttatcactgtatttatcatttccc 1713936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 3169377 - 3169319
Alignment:
Q  467 tatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaattt 525  Q
    ||||||||  |||||||||||||||||| | ||||||||||| | | ||||||||||||    
T  3169377 tatttatctagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaattt 3169319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 493 - 640
Target Start/End: Complemental strand, 46413849 - 46413701
Alignment:
Q  493 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttgg---aaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatac 589  Q
    |||| |||||||| ||||||||||||||||||||||||||| |||   |||||| |||||||| || ||||||||| |||||||| |  ||| |||||||    
T  46413849 tttatcaagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaaggtg--ttaacaaatac 46413752  T
Q  590 attgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    | |||||||||||||| || ||||||||||||| | |||||||||||||||    
T  46413751 actgtcttgaaatttttttaataaattttgtcaatgtatctatcatttccc 46413701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 477 - 642
Target Start/End: Complemental strand, 23611868 - 23611706
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggag 576  Q
    |||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||  |||||||| | |||||| |||  ||||||| || ||||  |    
T  23611868 gagtttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaagagaggtaatgg-atgtaattaagtaaag--g 23611772  T
Q  577 agttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccat 642  Q
     |||| |||||||| ||| ||||||||||||| ||||||||| ||| | |||||||||||||||||    
T  23611771 tgttaacaaatacactgttttgaaattttcttgataaattttatcattgtatctatcatttcccat 23611706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 481 - 608
Target Start/End: Complemental strand, 21882884 - 21882759
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    |||||| ||||||| |  |||||||| ||||| ||||||||||||||||||||  |||||||| |||||||| |||||||||||| ||||||  || |||    
T  21882884 ttttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaggaaa--agtgtt 21882787  T
Q  581 agcaaatacattgtcttgaaattttctt 608  Q
    |||||||||| |||||||||||||||||    
T  21882786 agcaaatacactgtcttgaaattttctt 21882759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 481 - 619
Target Start/End: Original strand, 22631473 - 22631609
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    |||||| ||||||| | ||||||||| ||||| ||||||||||||||||||||| ||||||||  |||| || | |||||||||| |||||||  | |||    
T  22631473 ttttattaagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaattaaggaaag--gtgtt 22631570  T
Q  581 agcaaatacattgtcttgaaattttcttcataaattttg 619  Q
    ||| ||||||  |||||||||||||||| ||||| ||||    
T  22631571 agctaatacaccgtcttgaaattttcttgataaagtttg 22631609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 481 - 641
Target Start/End: Original strand, 20125583 - 20125741
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    |||||||||||||| | |||||||| || ||| |||||||||||||||| ||||  ||||| |  | || || |||||||||||| | ||||||    ||    
T  20125583 ttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataatggtgtgtaattaaagaaaggta--tt 20125680  T
Q  581 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 641  Q
    |||||||||| |||||| |||||||||| ||||| ||||||| | ||||||||||||||||    
T  20125681 agcaaatacactgtcttcaaattttcttgataaaatttgtcattgtatctatcatttccca 20125741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 477 - 572
Target Start/End: Original strand, 46297602 - 46297697
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaa 572  Q
    |||||||||||||||||||| |||||||| |||||| ||| || |||||||||||||| | |||||| ||||| || |||||||||||| ||||||    
T  46297602 gagtttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaatggtgtgtaattaaggaaa 46297697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 481 - 565
Target Start/End: Complemental strand, 24250569 - 24250485
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaatt 565  Q
    |||||||||||||| | ||||||||| ||| | |||||| |||||||||||||| |||||||| |||||||| |||| |||||||    
T  24250569 ttttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaatggtttgtaatt 24250485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 481 - 640
Target Start/End: Original strand, 8123684 - 8123841
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    |||||||| ||||| | |||||||| ||||||  ||||||||||||||||||||||||||| |  |||| || |  ||| ||||| | |||||  | |||    
T  8123684 ttttatcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatttgttggaaattaatggagataataatgtataattaaagaaag--gtgtt 8123781  T
Q  581 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    |||||||| |  ||| | |||||||||  ||| ||||||| ||| |||||||||||||||    
T  8123782 agcaaatataccgtcctaaaattttctggatacattttgttactatatctatcatttccc 8123841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 481 - 640
Target Start/End: Original strand, 19511403 - 19511560
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    |||||||||||||| |  ||||||| || | | |||||||||||| |||||| ||||||||||  |||| || | ||| |||||| |||||||  | |||    
T  19511403 ttttatcaagaattgattaagaaaaagttttagccaattaaatttattattttttggaaatcaatggagataatagtgagtaattaaggaaag--gtgtt 19511500  T
Q  581 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    |  ||||||| ||||| |||||||| || ||||| ||| |||||  ||||||||||||||    
T  19511501 aataaatacactgtctcgaaatttttttgataaaatttatcactgcatctatcatttccc 19511560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 608
Target Start/End: Original strand, 1985025 - 1985124
Alignment:
Q  507 gtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttc 606  Q
    |||||| ||||||||||||||||||||  |||||||| || ||||| |||| ||||||| ||||||   | ||||||||||||| | |||| ||||||||    
T  1985025 gtctcagccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaa--tgtgttagcaaatacactatcttaaaattttc 1985122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 477 - 533
Target Start/End: Original strand, 44600997 - 44601053
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttg 533  Q
    ||||||||||||||||||| | ||||||| || |||| |||||||||||||||||||    
T  44600997 gagtttttatcaagaatttgataagaaaatgtttcaatcaattaaatttgttatttg 44601053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 481 - 559
Target Start/End: Complemental strand, 23730618 - 23730540
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgt 559  Q
    |||||||||||||| | |||||||| || ||| | ||||||||| ||||||||| |||||||| | |||||| ||||||    
T  23730618 ttttatcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaagagaggtaatggtgt 23730540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 498 - 637
Target Start/End: Complemental strand, 42504292 - 42504155
Alignment:
Q  498 caagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtctt 597  Q
    ||||||||| | ||||||||||||||||||||||||  |||||||| |||||||| || ||||||||| |||||||  | |||| |||||||| ||||||    
T  42504292 caagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatgtgtaattaaggaaag--gtgttaacaaatacactgtctt 42504195  T
Q  598 gaaattttcttcataaattttgtcactctatctatcattt 637  Q
     |||||||||| ||| ||||||||| | ||||||||||||    
T  42504194 aaaattttcttgatacattttgtcattgtatctatcattt 42504155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 457 - 639
Target Start/End: Original strand, 37762776 - 37762956
Alignment:
Q  457 cattgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctca--accaattaaatttgttatttgttggaaatcatgggaggtagt 554  Q
    ||||||||||||| ||  | ||||||| |||||||||||| |||||||| | | ||  |||||||||||||||||||||  | || |||  |||  || |    
T  37762776 cattgctatttatcta--aagagttttcatcaagaatttatcaagaaaatgccacacaaccaattaaatttgttatttgacgaaagtcaaaggaaataat 37762873  T
Q  555 ggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcc 639  Q
    | ||||||||| ||||||  || |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  37762874 gatgtgtaattaaggaaa--agtgttaacaaatacattgtcttgaaatttttttgataaattttgtcactctatctatcatttcc 37762956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 481 - 641
Target Start/End: Original strand, 5288515 - 5288673
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagtt 580  Q
    |||||| ||||||| |  ||||||| |||||| ||||||||||||||||||||  | |||||| ||||| || |||||||||||| |  |||   | |||    
T  5288515 ttttattaagaattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaa--aaaaatgtgtt 5288612  T
Q  581 agcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccca 641  Q
    |||||||| |  ||||||||| |||||| ||| | ||||||||||||||||||||||||||    
T  5288613 agcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttccca 5288673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 480 - 647
Target Start/End: Original strand, 24060568 - 24060731
Alignment:
Q  480 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagt 579  Q
    ||||||||||||||| | |||||||| |||| | | |||||||||||||||| ||| ||||||| ||||| || |||||||||||| ||||||   | ||    
T  24060568 tttttatcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatggtgtgtaattaaggaaa--tgtgt 24060665  T
Q  580 tagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttcccattataa 647  Q
    ||||||||||| ||| || |||||||||| ||| |  |||||||| || | | |||||||||||||||    
T  24060666 tagcaaatacactgttttaaaattttcttaataca--ttgtcactgtaccaagcatttcccattataa 24060731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 481 - 565
Target Start/End: Original strand, 25817658 - 25817742
Alignment:
Q  481 ttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaatt 565  Q
    |||||||||||||| | ||||||||||||||| ||||||||||||||||||||  |||||||| | |||||| ||||||||||||    
T  25817658 ttttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaatt 25817742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 488 - 574
Target Start/End: Original strand, 19482518 - 19482604
Alignment:
Q  488 aagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagg 574  Q
    ||||||||| ||||||||  | ||||||||||||||||||||||||  |||||||| |||| ||| |||||||||||| ||||||||    
T  19482518 aagaatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgtgtaattaaggaaagg 19482604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 623
Target Start/End: Original strand, 30220711 - 30220832
Alignment:
Q  498 caagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtctt 597  Q
    ||||||||||| ||| |||||||| ||||||||| |  |||||||| ||||| || |||||||||||| ||||||  || ||||||||||||| ||||||    
T  30220711 caagaaaaggtttca-ccaattaattttgttattggccggaaatcaagggag-tattggtgtgtaattaaggaaa--agtgttagcaaatacactgtctt 30220806  T
Q  598 gaaattttcttcataaattttgtcac 623  Q
     |||||||||| ||| ||||||||||    
T  30220807 aaaattttcttgatacattttgtcac 30220832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 493 - 574
Target Start/End: Complemental strand, 29065381 - 29065300
Alignment:
Q  493 tttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagg 574  Q
    |||| |||||||| ||||||| |||||||||||||||||||  ||||||||  ||||||| |||||||||||| | ||||||    
T  29065381 tttatcaagaaaaagtctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaagg 29065300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 41545412 - 41545460
Alignment:
Q  485 atcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttg 533  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||    
T  41545412 atcaagaatttatcaagaaaaggcctcaaccaattaaatttgttatttg 41545460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 583 - 640
Target Start/End: Original strand, 19663375 - 19663432
Alignment:
Q  583 caaatacattgtcttgaaattttcttcataaattttgtcactctatctatcatttccc 640  Q
    |||||||| | |||| |||||||||| ||||||||||||||| |||||||||||||||    
T  19663375 caaatacactctcttaaaattttcttgataaattttgtcactgtatctatcatttccc 19663432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 19663333 - 19663274
Alignment:
Q  578 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctatcattt 637  Q
    |||| |||||||| |||||||| ||||| || ||||||||||||||| ||||||||||||    
T  19663333 gttaacaaatacactgtcttgacattttttttataaattttgtcactgtatctatcattt 19663274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 632
Target Start/End: Original strand, 19482801 - 19482855
Alignment:
Q  578 gttagcaaatacattgtcttgaaattttcttcataaattttgtcactctatctat 632  Q
    |||| |||||| | ||||||||||||||||| ||||||||||||||| |||||||    
T  19482801 gttaacaaataaactgtcttgaaattttcttgataaattttgtcactgtatctat 19482855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 574
Target Start/End: Complemental strand, 2765487 - 2765390
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagg 574  Q
    |||||||||| |||| || | ||||||||||||| | |||||||||||||||||| |    |||||||||||| || || ||||||||| | ||||||    
T  2765487 gagtttttattaagagttgatcaagaaaaggtctaagccaattaaatttgttattggccaaaaatcatgggagataatgatgtgtaattaatgaaagg 2765390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 504 - 642
Target Start/End: Original strand, 16528579 - 16528718
Alignment:
Q  504 aaggtctcaaccaattaaatttgttatttgttggaaatcatggga---ggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaa 600  Q
    ||||||||| ||||||||||||||||||||| ||||||||   ||     || |||||||||||| | ||||   | |||| |||||||| | |||| ||    
T  16528579 aaggtctcagccaattaaatttgttatttgtcggaaatcaaatgatatattaatggtgtgtaattaaagaaa--tgtgttaacaaatacactatcttaaa 16528676  T
Q  601 attttcttcataaattttgtcactctatctatcatttcccat 642  Q
    |||||||| ||| || ||||| || |||||||||||||||||    
T  16528677 attttcttgatacatgttgtcgctgtatctatcatttcccat 16528718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 531
Target Start/End: Complemental strand, 42108802 - 42108751
Alignment:
Q  480 tttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatt 531  Q
    ||||||||||||||| | |||||||| || ||| ||||||||||||||||||    
T  42108802 tttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatt 42108751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 534
Target Start/End: Original strand, 13218444 - 13218501
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgt 534  Q
    |||||||||| || ||||||  |||||||||||||   ||||||||||||||||||||    
T  13218444 gagtttttattaaaaatttattaagaaaaggtctcggtcaattaaatttgttatttgt 13218501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 525 - 640
Target Start/End: Complemental strand, 27180 - 27067
Alignment:
Q  525 tgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaattttcttcataaattttgtcact 624  Q
    |||||||||  |||||||| ||||| || | | |||||||| |||||||| |  ||| |||||||| ||||||||||||||||| |||||||||||||||    
T  27180 tgttatttggcggaaatcaagggagataatagagtgtaattaaggaaaggtg--ttaacaaatacactgtcttgaaattttcttgataaattttgtcact 27083  T
Q  625 ctatctatcatttccc 640  Q
     |||||||||||||||    
T  27082 gtatctatcatttccc 27067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 574
Target Start/End: Complemental strand, 70044 - 69947
Alignment:
Q  477 gagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtggtgtgtaattgaggaaagg 574  Q
    ||||||||||| | |||| | ||||||||||| ||| |||||||||||||||||| |  |||||||| ||||| || ||| |||||||| ||||||||    
T  70044 gagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaattaaggaaagg 69947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 457 - 605
Target Start/End: Original strand, 18605 - 18749
Alignment:
Q  457 cattgctatttatttatcaggagtttttatcaagaatttaacaagaaaaggtctcaaccaattaaatttgttatttgttggaaatcatgggaggtagtgg 556  Q
    ||||||||||||| ||  | ||| |||||| ||||||| | |||||||| |||| |  |||||||||||||||||||| | |||| | ||||| || |||    
T  18605 cattgctatttatcta--aagagattttattaagaattgatcaagaaaaagtcttagtcaattaaatttgttatttgtcgaaaattaagggagataatgg 18702  T
Q  557 tgtgtaattgaggaaaggagagttagcaaatacattgtcttgaaatttt 605  Q
    || |||||| ||||||   | ||||||||||||| ||| ||||| ||||    
T  18703 tgagtaattaaggaaa--tgtgttagcaaatacactgttttgaattttt 18749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University