View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18208_low_12 (Length: 314)

Name: NF18208_low_12
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18208_low_12
NF18208_low_12
[»] chr1 (7 HSPs)
chr1 (216-303)||(7338139-7338226)
chr1 (89-154)||(7338012-7338077)
chr1 (86-154)||(7338799-7338867)
chr1 (85-130)||(27891311-27891356)
chr1 (86-154)||(2367543-2367611)
chr1 (85-130)||(1764515-1764560)
chr1 (86-130)||(10469647-10469691)
[»] chr8 (17 HSPs)
chr8 (86-154)||(42578709-42578777)
chr8 (86-154)||(6462616-6462684)
chr8 (86-151)||(7870376-7870441)
chr8 (89-153)||(42503029-42503093)
chr8 (86-153)||(38443695-38443762)
chr8 (93-154)||(38444465-38444526)
chr8 (86-154)||(11519350-11519418)
chr8 (86-154)||(42503922-42503990)
chr8 (87-154)||(11520091-11520158)
chr8 (84-147)||(12203350-12203413)
chr8 (84-147)||(12447778-12447841)
chr8 (86-148)||(17923866-17923928)
chr8 (91-148)||(8814483-8814540)
chr8 (86-139)||(12202690-12202743)
chr8 (86-139)||(12447118-12447171)
chr8 (86-154)||(20169014-20169082)
chr8 (86-130)||(38443623-38443667)
[»] chr2 (9 HSPs)
chr2 (85-154)||(35029862-35029931)
chr2 (85-154)||(34228146-34228215)
chr2 (85-154)||(34229075-34229144)
chr2 (85-134)||(42148679-42148728)
chr2 (86-154)||(39062900-39062968)
chr2 (92-154)||(39062225-39062287)
chr2 (85-150)||(4855344-4855409)
chr2 (85-154)||(38823219-38823288)
chr2 (86-130)||(6205448-6205492)
[»] chr4 (10 HSPs)
chr4 (86-154)||(39311372-39311440)
chr4 (86-154)||(36386035-36386103)
chr4 (86-154)||(39310396-39310464)
chr4 (87-154)||(24484784-24484851)
chr4 (86-154)||(36385818-36385886)
chr4 (85-132)||(32159544-32159591)
chr4 (91-153)||(38002885-38002947)
chr4 (85-154)||(31414848-31414917)
chr4 (86-130)||(5469988-5470032)
chr4 (86-154)||(44516785-44516853)
[»] chr6 (5 HSPs)
chr6 (86-154)||(34260116-34260184)
chr6 (88-133)||(10386790-10386835)
chr6 (86-154)||(6829989-6830057)
chr6 (86-154)||(34262186-34262254)
chr6 (86-154)||(6826558-6826626)
[»] chr5 (2 HSPs)
chr5 (91-153)||(2639717-2639779)
chr5 (86-151)||(120073-120138)
[»] chr3 (7 HSPs)
chr3 (87-154)||(35903690-35903757)
chr3 (86-130)||(44312393-44312437)
chr3 (86-130)||(23513688-23513732)
chr3 (91-150)||(40810290-40810349)
chr3 (89-154)||(1772870-1772935)
chr3 (86-130)||(23514510-23514554)
chr3 (86-130)||(34329152-34329196)
[»] chr7 (6 HSPs)
chr7 (86-154)||(35753065-35753137)
chr7 (85-154)||(5956438-5956507)
chr7 (86-154)||(5960993-5961061)
chr7 (86-154)||(43844794-43844862)
chr7 (114-154)||(39020961-39021001)
chr7 (86-154)||(44390723-44390791)
[»] scaffold0402 (1 HSPs)
scaffold0402 (86-154)||(10856-10924)
[»] scaffold0098 (1 HSPs)
scaffold0098 (82-154)||(52260-52332)
[»] scaffold0291 (1 HSPs)
scaffold0291 (86-154)||(19375-19444)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 7338139 - 7338226
Alignment:
Q  216 cataagcatacacgctcttctttgatacaacatgcactctccttcttccttctctcatagtctcacaggtcacaactactctcccttt 303  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7338139 cataagcatgcacgctcttctttgatacaacatgcactctccttcttccttctctcatagtctcacaggtcacagctactctcccttt 7338226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 7338012 - 7338077
Alignment:
Q  89 tccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7338012 tccatctttgctccatttatattttctcaatttatcccatttcaagtcatagatatgtgacatgtg 7338077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 7338867 - 7338799
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||| |||||||    
T  7338867 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtg 7338799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 27891356 - 27891311
Alignment:
Q  85 ggagtccatctttgctccatttatattttctcaatttaccccattt 130  Q
    |||||||||||||||||||||||| ||| ||||||||| |||||||    
T  27891356 ggagtccatctttgctccatttatctttactcaatttatcccattt 27891311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 2367611 - 2367543
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||   ||| |||||||||||||||||| ||| || ||| |||||||||||    
T  2367611 gagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgtg 2367543  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 1764515 - 1764560
Alignment:
Q  85 ggagtccatctttgctccatttatattttctcaatttaccccattt 130  Q
    |||||||||||||||||||||||  ||| |||||||||||| ||||    
T  1764515 ggagtccatctttgctccatttaagtttgctcaatttaccctattt 1764560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 10469691 - 10469647
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccattt 130  Q
    |||||||||||||||| |||||| ||| |||||||||| ||||||    
T  10469691 gagtccatctttgctcaatttatgtttcctcaatttactccattt 10469647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 42578709 - 42578777
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtg 42578777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 6462684 - 6462616
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| | |||||||||    
T  6462684 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcctagatgtatgacatgtg 6462616  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 7870441 - 7870376
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacat 151  Q
    |||||||||||||||||||||| | |||||||||||||||||||| |||| |||||| ||||||||    
T  7870441 gagtccatctttgctccatttagactttctcaatttaccccatttgaagttatagatgtgtgacat 7870376  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 42503029 - 42503093
Alignment:
Q  89 tccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgt 153  Q
    |||||||||||||||||||  ||| |||||||||||||||||||  |||||||| ||||||||||    
T  42503029 tccatctttgctccatttaagtttcctcaatttaccccatttcatatcatagatgtgtgacatgt 42503093  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 38443695 - 38443762
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgt 153  Q
    ||||||||||||||||||||||  ||| | ||||||||||||||||||||||||| |  |||||||||    
T  38443695 gagtccatctttgctccatttaagtttccacaatttaccccatttcaagtcatagttgcgtgacatgt 38443762  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 38444526 - 38444465
Alignment:
Q  93 tctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| |||||||||| |||| |||||||||||| ||||||||| |||||| |||||||||||    
T  38444526 tcttagctccatttagatttcctcaatttacccaatttcaagttatagatgtgtgacatgtg 38444465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 11519350 - 11519418
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||| |||||  |||  ||||||||||||||||||| |||||||| |||||||||||    
T  11519350 gagttcatctttgctcaatttaggtttcttcaatttaccccatttcaaatcatagatgtgtgacatgtg 11519418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 42503990 - 42503922
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||||||||||||||||||||   || |||||||||||||||| ||  |||||||| |||||||||||    
T  42503990 gagtccatctttgctccatttaggcttcctcaatttaccccattccatatcatagatgtgtgacatgtg 42503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 11520158 - 11520091
Alignment:
Q  87 agtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||||||||||| |  |||||  |||||||||||||| |||||| ||||||||||| |||||||||||    
T  11520158 agtccatctttgttttatttaggttttctcaatttacaccatttaaagtcatagatgtgtgacatgtg 11520091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 12203413 - 12203350
Alignment:
Q  84 gggagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtg 147  Q
    |||||||||||||||||||||||   ||| |||||||||  |||||||||||||||||| ||||    
T  12203413 gggagtccatctttgctccatttcattttcctcaatttataccatttcaagtcatagatgtgtg 12203350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 12447841 - 12447778
Alignment:
Q  84 gggagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtg 147  Q
    |||||||||||||||||||||||   ||| |||||||||  |||||||||||||||||| ||||    
T  12447841 gggagtccatctttgctccatttcattttcctcaatttataccatttcaagtcatagatgtgtg 12447778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 17923866 - 17923928
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtga 148  Q
    |||||||| |||| |||||||| ||||  ||||||||||| |||||||||||||||| |||||    
T  17923866 gagtccatttttgatccatttaaatttcttcaatttacccaatttcaagtcatagatgtgtga 17923928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 8814540 - 8814483
Alignment:
Q  91 catctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtga 148  Q
    ||||||||||||||||   ||| |||||||||||||||| |||||||| ||| |||||    
T  8814540 catctttgctccattttggtttcctcaatttaccccattacaagtcatggatgtgtga 8814483  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 12202690 - 12202743
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcata 139  Q
    ||||||||||||||| |||||   ||| ||||||||||| ||||||||||||||    
T  12202690 gagtccatctttgcttcatttccttttgctcaatttacctcatttcaagtcata 12202743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 12447118 - 12447171
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcata 139  Q
    ||||||||||||||| |||||   ||| ||||||||||| ||||||||||||||    
T  12447118 gagtccatctttgcttcatttccttttgctcaatttacctcatttcaagtcata 12447171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 20169082 - 20169014
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||||  || ||| |||||| || ||| || ||| ||||||||||||||||    
T  20169082 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtg 20169014  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 38443667 - 38443623
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccattt 130  Q
    ||||||||||||||||||||||  ||| ||| |||||||||||||    
T  38443667 gagtccatctttgctccatttaagtttgctccatttaccccattt 38443623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 35029931 - 35029862
Alignment:
Q  85 ggagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  35029931 ggagtctatctttgctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtg 35029862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 34228146 - 34228215
Alignment:
Q  85 ggagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||||||||||||||||||||||   || |||||||||||||||||||||| |||||| |||||||||||    
T  34228146 ggagtccatctttgctccatttaagattcctcaatttaccccatttcaagttatagatgtgtgacatgtg 34228215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 34229144 - 34229075
Alignment:
Q  85 ggagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||||||||||||||||||||||   || ||||||||||||||||| ||||||||||| |||||||||||    
T  34229144 ggagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtg 34229075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 42148679 - 42148728
Alignment:
Q  85 ggagtccatctttgctccatttatattttctcaatttaccccatttcaag 134  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  42148679 ggagtccatctttgctccatttatgttttctcaatttatcccatttcaag 42148728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 39062968 - 39062900
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||||||||||| ||||||||| |||  ||||||||||| |||||||||||||||| | |||||||||    
T  39062968 gagtccatctttgttccatttatgtttgttcaatttacccaatttcaagtcatagatgtatgacatgtg 39062900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 39062225 - 39062287
Alignment:
Q  92 atctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||||||||||||||   |||  |||||||| ||||||||||||||||||| | |||||||||    
T  39062225 atctttgctccattttggtttgttcaatttatcccatttcaagtcatagatgtatgacatgtg 39062287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 4855409 - 4855344
Alignment:
Q  85 ggagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgaca 150  Q
    ||||| |||||||||||||||||| ||| |||||||||| || ||||||   |||||| |||||||    
T  4855409 ggagttcatctttgctccatttatgtttgctcaatttactccttttcaatgtatagatgtgtgaca 4855344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 38823219 - 38823288
Alignment:
Q  85 ggagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||| |||||||||||||||||||||| ||| |||||| || ||| || | | |||| |||||||||||    
T  38823219 ggagttcatctttgctccatttatatttgctccatttactccttttgaatttacagatgtgtgacatgtg 38823288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 6205492 - 6205448
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccattt 130  Q
    ||||||||||||||||||||||   || |||||||||||||||||    
T  6205492 gagtccatctttgctccatttaggcttcctcaatttaccccattt 6205448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 39311440 - 39311372
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||||||||||||||||||||   |||||||||||||||||||| ||||||||||| |||||||||||    
T  39311440 gagtccatctttgctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgacatgtg 39311372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 36386103 - 36386035
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||   ||| |||||||||||||||||| |||||| ||| |||||||||||    
T  36386103 gagtgcatctttgctccatttcactttgctcaatttaccccatttctagtcatggatgtgtgacatgtg 36386035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 39310396 - 39310464
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||||||||||||||||||||   || ||||||||| |||||||||||| |||||| | |||||||||    
T  39310396 gagtccatctttgctccatttaagattcctcaatttatcccatttcaagttatagatgtatgacatgtg 39310464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 24484784 - 24484851
Alignment:
Q  87 agtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||||||||||||||||||||   || ||||||||| || ||||||||| |||||| |||||||||||    
T  24484784 agtccatctttgctccatttaagattcctcaatttatcctatttcaagttatagatgtgtgacatgtg 24484851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 36385886 - 36385818
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||   ||| |||||||||||||||||| ||| || ||| |||||||||||    
T  36385886 gagtgcatctttgctccatttcactttgctcaatttaccccatttctagtaatggatgtgtgacatgtg 36385818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 32159591 - 32159544
Alignment:
Q  85 ggagtccatctttgctccatttatattttctcaatttaccccatttca 132  Q
    ||||| |||||||||||||||||  ||| |||||||||||||||||||    
T  32159591 ggagtgcatctttgctccatttaggtttcctcaatttaccccatttca 32159544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 38002947 - 38002885
Alignment:
Q  91 catctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgt 153  Q
    |||| ||||||||||||  | | ||| ||||| || |||||||||||||||||||||||||||    
T  38002947 catcattgctccatttaggtgtactctatttatccaatttcaagtcatagatatgtgacatgt 38002885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 31414917 - 31414848
Alignment:
Q  85 ggagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||||||||||||||||||||||  ||| |||||||||  || |||||  | || |||||||||||||||    
T  31414917 ggagtccatctttgctccatttaagtttcctcaatttattccttttcactttattgatatgtgacatgtg 31414848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 5470032 - 5469988
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccattt 130  Q
    ||||||||||||||||||||||  ||| ||||||||| |||||||    
T  5470032 gagtccatctttgctccatttaagtttgctcaatttatcccattt 5469988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 44516785 - 44516853
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||| ||||||| ||||||||  ||| || |||||||| ||||| |||| |||||| |||||||||||    
T  44516785 gagtctatctttgatccatttaggtttccttaatttacctcattttaagtgatagatgtgtgacatgtg 44516853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 34260116 - 34260184
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||||||||||||||||||||   ||| ||||||||||||||||||||||||| ||| |||||||||||    
T  34260116 gagtccatctttgctccattttcctttcctcaatttaccccatttcaagtcatggatgtgtgacatgtg 34260184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 10386835 - 10386790
Alignment:
Q  88 gtccatctttgctccatttatattttctcaatttaccccatttcaa 133  Q
    |||||||||| |||||||||  ||||||||||||||||||||||||    
T  10386835 gtccatctttactccatttaatttttctcaatttaccccatttcaa 10386790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 6830057 - 6829989
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||   ||| |||||||||||||||||| ||| || ||| |||||||||||    
T  6830057 gagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgtg 6829989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 34262254 - 34262186
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||   ||| ||||||||||||||||| |||| || ||| |||||||||||    
T  34262254 gagttcatctttgctccattttcctttcctcaatttaccccattttaagttatggatgtgtgacatgtg 34262186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 6826558 - 6826626
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||   ||| |||||||||||||||||| | | || ||| |||||||||||    
T  6826558 gagtgcatctttgctccatttcactttcctcaatttaccccatttctaataatggatgtgtgacatgtg 6826626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 2639717 - 2639779
Alignment:
Q  91 catctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgt 153  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||| ||||||    
T  2639717 catctttgctccatttatttttgctcaatttaccccatttcaagttatagatgtgtaacatgt 2639779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 120073 - 120138
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacat 151  Q
    |||| |||||||||||||||||  ||| |||||||||||||||||||||| ||||||  |||||||    
T  120073 gagttcatctttgctccatttagctttcctcaatttaccccatttcaagttatagatgcgtgacat 120138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 35903690 - 35903757
Alignment:
Q  87 agtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||  || ||||||||||||||||||||||| || ||| |||||||||||    
T  35903690 agtctatctttgctccatttaggttctctcaatttaccccatttcaagttatggatgtgtgacatgtg 35903757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 44312437 - 44312393
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccattt 130  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  44312437 gagtccatctttgctccatttatgtttcctcaatttaccccattt 44312393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 23513688 - 23513732
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccattt 130  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||    
T  23513688 gagtccatctttgctccatttatctttgctcaatttatcccattt 23513732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 40810349 - 40810290
Alignment:
Q  91 catctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgaca 150  Q
    |||||||||||||||||  ||| ||||||||| ||||||| ||||||| ||| |||||||    
T  40810349 catctttgctccatttaagtttcctcaatttatcccattttaagtcatggatgtgtgaca 40810290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 1772870 - 1772935
Alignment:
Q  89 tccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||| |||||||||||||  ||| |||||||||||||||||    |||| |||||||||||||||    
T  1772870 tccatatttgctccatttaagtttgctcaatttaccccatttactatcatggatatgtgacatgtg 1772935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 23514554 - 23514510
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccattt 130  Q
    |||||||||||||||||||||   ||| |||||||||||||||||    
T  23514554 gagtccatctttgctccatttgcctttgctcaatttaccccattt 23514510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 34329196 - 34329152
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccattt 130  Q
    ||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  34329196 gagtccatctttgcttcatttatttttgctcaatttactccattt 34329152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 35753137 - 35753065
Alignment:
Q  86 gagtccatctttgctccatttatattttctca----atttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||||||||||||||||||||| ||| ||||    ||||||||||||||| ||||||||| | |||||||||    
T  35753137 gagtccatctttgctccatttatgtttactcaatttatttaccccatttcacgtcatagatgtatgacatgtg 35753065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 5956438 - 5956507
Alignment:
Q  85 ggagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||| ||||||||||||||||   ||| |||||||||||||||||| ||| || ||| |||||||||||    
T  5956438 ggagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgtg 5956507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 5961061 - 5960993
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||   ||| |||||||||||||||||| ||| || ||| |||||||||||    
T  5961061 gagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgtg 5960993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 43844794 - 43844862
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||   ||| ||||||||||||||||| ||| ||| ||| |||||||||||    
T  43844794 gagtgcatctttgctccatttcactttgctcaatttaccccatttaaagacatggatgtgtgacatgtg 43844862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 39020961 - 39021001
Alignment:
Q  114 ctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    ||||||||||||||||||||| ||| ||| |||||||||||    
T  39020961 ctcaatttaccccatttcaagacatggatgtgtgacatgtg 39021001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 44390791 - 44390723
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||||  || ||| |||||| || ||| || ||| ||||||||||||||||    
T  44390791 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtg 44390723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 10856 - 10924
Alignment:
Q  86 gagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| ||||||||||||||||   ||| ||||||||||||||||| ||| ||| ||| |||||||||||    
T  10856 gagtgcatctttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgtgacatgtg 10924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 52260 - 52332
Alignment:
Q  82 atgggagtccatctttgctccatttatattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||||||| |||||||||||||||| | ||| ||| |||||| || ||||||  ||||||| |||||||||||    
T  52260 atgggagttcatctttgctccatttttgtttcctccatttactccttttcaatgcatagatgtgtgacatgtg 52332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 19444 - 19375
Alignment:
Q  86 gagtccatctttgctccattt-atattttctcaatttaccccatttcaagtcatagatatgtgacatgtg 154  Q
    |||| |||||||||||||||| ||  ||||||||||||||||||||  || | | |||||||||||||||    
T  19444 gagtgcatctttgctccattttatcatttctcaatttaccccatttttagacgtggatatgtgacatgtg 19375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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