View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_low_14 (Length: 286)
Name: NF18208_low_14
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 12838655 - 12838920
Alignment:
| Q |
18 |
ggttgatggcattggattggtggtatgaagaaaatggatgaaatggtgaagagaatgataattgataaacttgaaaccttcattttgttttaattttgac |
117 |
Q |
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| T |
12838655 |
ggttgatggcattggattagtggtatgaagaaaatggatgaaatggttaagagaatgataattgataaacttgaaatcttcattttgttttaattttaac |
12838754 |
T |
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| Q |
118 |
aataagagtgattatgcttctcttaattgattgaagaacacaaatgataagaggatagtagggatggattatataaagactttgttagggcaatgaaata |
217 |
Q |
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| T |
12838755 |
aataagagtgattatgcttctcttaattgattgaagaacacaaatgataagaggatagtagggatggattatataaagactttgttagggcaatgaaata |
12838854 |
T |
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| Q |
218 |
aattaatggtttgaatttgtaccattttaggatatatattttgacgctttgcattttggtcgctcg |
283 |
Q |
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| T |
12838855 |
aattaatggtttgaatttgtaccattttaggatatatattttgacgctttgcattttggtcgctcg |
12838920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 12831828 - 12832096
Alignment:
| Q |
18 |
ggttgatggcattggattggtggtatgaagaaaatggatgaaatggtgaagagaatgataattgataaacttgaaaccttcattttgttttaattttgac |
117 |
Q |
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| T |
12831828 |
ggttgatggcattgaattggtggtatgaagaaaatggatgaaatggttaagagaatgataattgaaaaacttgaaatcttcattttgttttaattttaac |
12831927 |
T |
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| Q |
118 |
aataagagtgattatgcttctcttaattgattgaagaacacaaatgataagaggatagtagggatggattat---ataaagactttgttagggcaatgaa |
214 |
Q |
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| T |
12831928 |
aataagagtgattatgcttctcttaattgattgaagaacacaaatgataagaggatagtagggatggattatataataaagactttgttagggcaatgaa |
12832027 |
T |
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| Q |
215 |
ataaattaatggtttgaatttgtaccattttaggatatatattttgacgctttgcattttggtcgctcg |
283 |
Q |
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| T |
12832028 |
ataaattaatggtttgaatttgtaccattttaggatatatattttgacgctttgcattttggtcgctcg |
12832096 |
T |
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