View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_low_18 (Length: 267)
Name: NF18208_low_18
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_low_18 |
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| [»] chr3 (11 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 4142521 - 4142272
Alignment:
| Q |
18 |
gttcttgactaccaatttcttgatgaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcagg |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4142521 |
gttcttgactaccaatttcttgatgaggattatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcagg |
4142422 |
T |
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| Q |
118 |
agtatccttttggaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcgtcggaatgtccacg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |
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| T |
4142421 |
agtatccttttggaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcattggaatgtccatg |
4142322 |
T |
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| Q |
218 |
ctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcac |
267 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
4142321 |
ctttattgtttcttttgatttggcaaaggagtcttatcaaaagatttcac |
4142272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 3754267 - 3754516
Alignment:
| Q |
18 |
gttcttgactaccaatttcttgatgaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcagg |
117 |
Q |
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||||||| ||||| | |||||||||||||| |||| ||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
3754267 |
gttcttgcctacctagttcttgatgaggattataggttttttaacaaaaataaagtaaaggttcatactttgggtactaatatatggagaaccatccagg |
3754366 |
T |
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| Q |
118 |
agtatccttttggaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcgtcggaatgtccacg |
217 |
Q |
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| T |
3754367 |
actatccttttggaggtcttcctgttccagttatgaagggggaatttgtgagtggcacaattaattggttgttgtccgaagaatcatcggaatgtccacg |
3754466 |
T |
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| Q |
218 |
ctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcac |
267 |
Q |
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|||||||||||| ||||||||||||| |||||| |||||||||||||||| |
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| T |
3754467 |
ctttattgtttcttttgatttggcaaaggagtcatatcaaaagatttcac |
3754516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 4158331 - 4158082
Alignment:
| Q |
18 |
gttcttgactaccaatttcttgatgaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcagg |
117 |
Q |
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|||||||| |||| | ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
4158331 |
gttcttgaatacctagttcttgatgaggatgatagtttttttaacaaaactcaagtaaaggttcatactttgggtactaatatttggagaaccattcagg |
4158232 |
T |
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| Q |
118 |
agtatccttttggaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaag---aatcgtcggaatgtcc |
214 |
Q |
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| |||| |||||| |||||| |||||| | ||||||||||||||||||||| || ||||||||||||||||| ||| | | | ||||| ||| |
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| T |
4158231 |
actatcattttggcggtcttattgttcc---catgaagggggaatttgtgagtggtacgattaattggttgttctctaaagagcagttctgggaatatcc |
4158135 |
T |
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| Q |
215 |
acgctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcac |
267 |
Q |
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| T |
4158134 |
atgctttattgtttcatttgatttggcaaaggagtcttatcaaaagatttcac |
4158082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 3745866 - 3745924
Alignment:
| Q |
209 |
atgtccacgctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcac |
267 |
Q |
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||||||| ||||||||||||| ||||||||||||| |||| ||| |||||||||||||| |
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| T |
3745866 |
atgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcac |
3745924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 23231307 - 23231261
Alignment:
| Q |
62 |
caaaactcaagtaatggttcatactttgggtactaatatatggagaa |
108 |
Q |
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| T |
23231307 |
caaaactcaaggaatggttcatactttgggtactaattcatggagaa |
23231261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 23235199 - 23235146
Alignment:
| Q |
62 |
caaaactcaagtaatggttcatactttgggtactaatatatggagaaccattca |
115 |
Q |
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| T |
23235199 |
caaaactcaaggcatggttcatactttgggtactaattcatggagaacaattca |
23235146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 2678723 - 2678671
Alignment:
| Q |
78 |
gttcatactttgggtactaatatatggagaaccattcaggagtatccttttgg |
130 |
Q |
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||||||||||||||| ||||||| ||||||| |||||| |||| ||||||||| |
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| T |
2678723 |
gttcatactttgggttctaatatttggagaaacattcaagagtttccttttgg |
2678671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 3745803 - 3745841
Alignment:
| Q |
155 |
gggggaatttgtgagtggcacaattaattggttgttctc |
193 |
Q |
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|||| |||||||||||||||| ||||||||||||||||| |
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| T |
3745803 |
ggggaaatttgtgagtggcactattaattggttgttctc |
3745841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 2678582 - 2678541
Alignment:
| Q |
219 |
tttattgtttcatttgatttggcaatggagtcttatcaaaag |
260 |
Q |
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| T |
2678582 |
tttattgtttcttttgatttggcaaaagagtcttatcaaaag |
2678541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 2686496 - 2686455
Alignment:
| Q |
221 |
tattgtttcatttgatttggcaatggagtcttatcaaaagat |
262 |
Q |
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| T |
2686496 |
tattgtttcttttgatttggcaaaagagtcttatcaaaagat |
2686455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 2686653 - 2686584
Alignment:
| Q |
61 |
acaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttttgg |
130 |
Q |
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||||| || |||||| |||||||||||||||| ||||||| |||| || ||| || |||| ||||||||| |
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| T |
2686653 |
acaaatctgaagtaaaggttcatactttgggttctaatatttggaaaaacatccatgagtttccttttgg |
2686584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 267
Target Start/End: Original strand, 11081555 - 11081726
Alignment:
| Q |
96 |
aatatatggagaaccattcaggagtatccttttggaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaa-ttggttgttctcc |
194 |
Q |
| |
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||||| ||||||||||||||||| |||| |||||| |||||| |||||| |||| ||| |||||||||||||||||| ||||||| ||||||||||| | |
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| T |
11081555 |
aatatttggagaaccattcaggattatctttttggcggtcttattgttcccgttatgaaaggggaatttgtgagtggcgcaattaatttggttgttct-c |
11081653 |
T |
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| Q |
195 |
gaagaatcgtcggaatgtccacgctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcac |
267 |
Q |
| |
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|| | | ||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |
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| T |
11081654 |
taatggtgttgggaatgtccacgctttattgtttgtttcgatttggcaaaggagtcttatcaaaagatttcac |
11081726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 6402109 - 6402077
Alignment:
| Q |
62 |
caaaactcaagtaatggttcatactttgggtac |
94 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
6402109 |
caaaactcaagttatggttcatactttgggtac |
6402077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 20020096 - 20020041
Alignment:
| Q |
75 |
atggttcatactttgggtactaatatatggagaaccattcaggagtatccttttgg |
130 |
Q |
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||||||||||| |||||||||||| | |||| || ||||||||||| ||||||||| |
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| T |
20020096 |
atggttcataccttgggtactaatttttggaaaagcattcaggagtgtccttttgg |
20020041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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