View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_low_2 (Length: 690)
Name: NF18208_low_2
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 1 - 677
Target Start/End: Complemental strand, 6817066 - 6816372
Alignment:
| Q |
1 |
aattcacaaagaatcaagtttggtttgaaaccacagtaccgttgaaccaaacctttatgccagaccagttagcctctgttcgattttgggcgaaccattt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6817066 |
aattcacaaagaatcaagtttggtttgaaaccacagtaccgttgaaccaaacctttatgccagaccagttagcctctgttcgatttcgggcgaaccattt |
6816967 |
T |
|
| Q |
101 |
acaattcggtttaattttaccgaactgttataacagttgaaattggttcggtttccttcctaaactcgattaccgaactggtcttagtttgaggtattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6816966 |
acaattcggtttaattttaccgaactgttataacagttgaaattggttcggtttccttcctaaactcgattaccgaactggtcttagtttgaggtattat |
6816867 |
T |
|
| Q |
201 |
ttgtattgttgctcaaccacaaaataacatggagtataata---------ttcatgatgttcatgtttatcagcttgttaagaactcaatgccaccaaat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6816866 |
ttgtattgttgctcaaccacaaaataacatggagtataatattcaagatattcatgatgttcatgtttttcagcttgttaagaactcaatgccaccaaat |
6816767 |
T |
|
| Q |
292 |
ttctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcattgagacacacgcaccacttgtaaaagaaggtagtaaatggctcaccaaaa |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6816766 |
ttctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcattgagacacacgcaccacttgtaaaagaaggtagtaaatggctcaccaaaa |
6816667 |
T |
|
| Q |
392 |
ccgcagaatcatgctcggtggtggca---------gcagctgttgcattctcaacctcaacagctatcccaggtggtcctaatcaaaataatggtatacc |
482 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6816666 |
ccgcagaatcatgctcggtggtagcagcacttgctgcagctgttgcattcacaacctcaacatctatcccaggtggtcctaatcaaaataatggtatacc |
6816567 |
T |
|
| Q |
483 |
actatttataaaagaacctgctttcaaactctatgctgcagcatcacttgttgcactttgcttctctgtcacagcccttgtttcgnnnnnnncgatactc |
582 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
6816566 |
actatttatgaaagaacctgcttacaaactctatgctgcagcatcacttgttgcactttgcttctctgtcacagctcttgtttcgtttctttcgatactc |
6816467 |
T |
|
| Q |
583 |
acatctcggtttgaagaaaaagattttgttgtggacttaccaagaaggcttcttgtagggttgactacactcttcacatctatagcatctgtgtt |
677 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6816466 |
acatctaggtttgaagaaaaagattttgttgtggacttaccaagaaggcttcttgtagggttgactacactcttcacatctatagcatctgtgtt |
6816372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 255 - 677
Target Start/End: Complemental strand, 6831231 - 6830800
Alignment:
| Q |
255 |
tgtttatcagcttgttaagaactcaatgccaccaaatttctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcattgagacacacgca |
354 |
Q |
| |
|
||||| |||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
6831231 |
tgtttttcagcttgttaagaactccatgccgcctaatttctatgaacgttataataaggatgggaaaacagcaaagcaagtcttcattgatacacacgca |
6831132 |
T |
|
| Q |
355 |
ccacttgtaaaagaaggtagtaaatggctcaccaaaaccgcagaatcatgctcggtggtggca---------gcagctgttgcattctcaacctcaacag |
445 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||| ||||||||||| ||||||| |||| |
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| T |
6831131 |
ccacttacaaaagaaggtagtaaatggctcaccaaaaccgcagaatcttgctcagtggtagcagcacttgttgcaactgttgcattcacaacctcgacag |
6831032 |
T |
|
| Q |
446 |
ctatcccaggtggtcctaatcaaaataatggtataccactatttataaaagaacctgctttcaaactctatgctgcagcatcacttgttgcactttgctt |
545 |
Q |
| |
|
||||||||||||||||| ||||| | ||||| |||||| | || || | |||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
6831031 |
ctatcccaggtggtcctgatcaagaatccggtatgccactactgctagaaaagcctgctttcaaactctatgctgtagcatcacttgttgcactttgctc |
6830932 |
T |
|
| Q |
546 |
ctctgtcacagcccttgtttcgnnnnnnncgatactcacatctcggtttgaagaaaaagattttgttgtggacttaccaagaaggcttcttgtagggttg |
645 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||| |
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|
| T |
6830931 |
ctctgtcacagcccttgttttgtttctttccatactcacatctcggtttgaagaaaaagattttgttattgacttaccaagaaagcttcttgtagggttg |
6830832 |
T |
|
| Q |
646 |
actacactcttcacatctatagcatctgtgtt |
677 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6830831 |
actacactcttcacatctatagcatctgtgtt |
6830800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 243 - 674
Target Start/End: Complemental strand, 6808851 - 6808414
Alignment:
| Q |
243 |
tcatgatgttcatgtttatcagcttgttaagaactcaatgccaccaaatttctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcatt |
342 |
Q |
| |
|
|||||||||| | ||| ||||||||||||| |||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
6808851 |
tcatgatgtttgtatttttcagcttgttaaggactccatgccgcctaatttctatgaacgttataataaggatgggaaaacagcaaagcaggtcttcatt |
6808752 |
T |
|
| Q |
343 |
gagacacacgcaccacttgtaaaagaaggtagtaaatggctcaccaaaaccgcagaatcatgctcggtggtggcagca------gc---tgttgcattct |
433 |
Q |
| |
|
|| ||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||| || |||||||||| |
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|
| T |
6808751 |
gacacacacggacaacttgtaaaagaaggtggtaaatggctcaccaaaactgcagaatcatgctcagtggtagcagcacttgttgcaagtgttgcattca |
6808652 |
T |
|
| Q |
434 |
caacctcaacagctatcccaggtggtcctaatcaaaataatggtataccactatttataaaagaacctgctttcaaactctatgctgcagcatcacttgt |
533 |
Q |
| |
|
||||||||||| ||||||||||||| | || | || ||||||||||| |||| ||||| | |||| ||||||||| ||||||| |||||||||||| |
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|
| T |
6808651 |
caacctcaacatctatcccaggtgg---ttatgatgatgatggtataccaatattcctaaaaaagcctgttttcaaactatatgctgtagcatcacttgt |
6808555 |
T |
|
| Q |
534 |
tgcactttgcttctctgtcacagcccttgtttcgnnnnnnncgatactcacatctcggtttgaagaaaaagattttgttgtggacttaccaagaaggctt |
633 |
Q |
| |
|
||||||||||| |||||||| || |||||| | ||||||| || ||||||||| ||||||| |||||| ||||||||||||||| || |||| |
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|
| T |
6808554 |
tgcactttgctcctctgtcatggctcttgttatgtttctttcgatactaacgtctcggtttcaagaaaaggattttcttgtggacttaccaaaaaagctt |
6808455 |
T |
|
| Q |
634 |
cttgtagggttgactacactcttcacatctatagcatctgt |
674 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6808454 |
cttctagggttgactacactcttcacatctatagcatctgt |
6808414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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