View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18208_low_24 (Length: 237)
Name: NF18208_low_24
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_low_24 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 24197407 - 24197191
Alignment:
| Q |
5 |
aacttggttatgacacgtggtgtcatagactaaaacaaacattcttgtgcatttggcatttaatgctgttattttaattttattatttaatctccannnn |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24197407 |
aacttggttatgacacgtggtgtcatagactaaaacaaacattcttgtgcatttggcatttaatgctgttattttaattttattatttaatctccatttt |
24197308 |
T |
|
| Q |
105 |
nnnnactacataattaacatagtattcgttctaaaataatttatcgggtcaatacttctagcctcatacaaatggaaacatataactatcattaattgaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24197307 |
ttttactacataattaacatagtattcgttctaaaataatttatcgggtcaatacttctagcctcatacaaatggaaacatataactatcattaattgaa |
24197208 |
T |
|
| Q |
205 |
agaaataattaacgtat |
221 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24197207 |
agaaataattaacgtat |
24197191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 47697000 - 47696812
Alignment:
| Q |
34 |
ctaaaacaaacattcttgtgcatttggcatttaatgctgttattttaattttattatttaatctccannnnnnnn-actacataattaacatagtattcg |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
47697000 |
ctaaaacaaacattcttgtgcatttggcatttaatgctgttattttaattttattatttaatctccatttttttttaatacataattaacatagtattcg |
47696901 |
T |
|
| Q |
133 |
ttctaaaataatttatcgggtcaatacttctagcctcatacaaatggaaacatataactatcattaattgaaagaaataattaacgtat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47696900 |
ttctaaaataatttatcgggtcaatacttctagcctcatacaaatggaaacatataactatcattaattgaaagaaataattaacgtat |
47696812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 47697486 - 47697454
Alignment:
| Q |
5 |
aacttggttatgacacgtggtgtcatagactaa |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
47697486 |
aacttggttatgacacgtggtgtcatagactaa |
47697454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University