View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_low_27 (Length: 225)
Name: NF18208_low_27
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 29193295 - 29193087
Alignment:
| Q |
1 |
taaccaatgacaactttt--atacctgtaagagtgcttgtttgttgacataaattctgactgagacgaaatttctgaaccaaagtcaatatttaaaggtt |
98 |
Q |
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| T |
29193295 |
taaccaatgacaacttttttatacctgtaagagtgcttgtttgttgacataaattctgactgagacgaaatttctgaaccaaagtcaatatttaaaggtt |
29193196 |
T |
|
| Q |
99 |
ccggctccttgtcatctttctggatctcctgggaaggaacacaatcagaaaaaatcaacaagcaaagactatggttttataagtgcaagtgcaaccgctg |
198 |
Q |
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| T |
29193195 |
ccggctccttgtcatctttcaggatctcctgggaaggaacacaatcagaaaaaatcaacaagcaaagactatggttttataagtgcaagtgcaaccgctg |
29193096 |
T |
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| Q |
199 |
gttctattt |
207 |
Q |
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||||||||| |
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| T |
29193095 |
gttctattt |
29193087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 29183064 - 29183018
Alignment:
| Q |
146 |
gaaaaaatcaacaagcaaagactatggttttataagtgcaagtgcaa |
192 |
Q |
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| T |
29183064 |
gaaaaaatcaacaagcaaagactatggttttataagtgcaagtgcaa |
29183018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 33632671 - 33632839
Alignment:
| Q |
15 |
ttttatacctgtaagagtgcttgtttgttgacataaattctgactgagacgaaatttctgaaccaaagtcaatatttaaaggttccggctccttgtcatc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
33632671 |
ttttatacctgtaagagtgcttgtttgttgacataaattctgactgagatgaaatttctgaaccaaagtcaatatttaaaggttctggctccttgttatc |
33632770 |
T |
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| Q |
115 |
tttctggatctcctgggaaggaacacaatcagaaaaaatcaacaagcaaagactatggttttataagtg |
183 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
33632771 |
ttttaggatctcctgggaaggaacacaatcataaaaaatcaacaagcaaatactatggttttataagtg |
33632839 |
T |
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