View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_low_4 (Length: 493)
Name: NF18208_low_4
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 50629638 - 50630095
Alignment:
| Q |
18 |
atgaagtacttggacttgattagcatgtgtagtaaccaagataaaatggaatcgatgcttcaaatgatagtcatgtgaaagatcttgttagcaggtttta |
117 |
Q |
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| T |
50629638 |
atgaagtacttggacttgattagcatgtgtagtaaccaagataaaatggaatcgatgcttcaaatgatagtcatgtgaaaggtcttgttagcaggtttta |
50629737 |
T |
|
| Q |
118 |
atcatcacatacacatggatgggctgtgaacttaggttgtcaatagatgtaactttgtttttgttttagtctaatttaattattttggtggaagcaccca |
217 |
Q |
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| T |
50629738 |
atcatcacatacacatggatgggctgtgaacttaggttgtcaatagatgtaactttgtttttgttttagtctaatttaattattttggtggaagcaccca |
50629837 |
T |
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| Q |
218 |
gcacatgatatgggacattcttgttgaacatgttagcctggccttttgattaggggagcaaaaaagtagggatatcatttggaaaagtagggcannnnnn |
317 |
Q |
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| T |
50629838 |
gcacatgatatgggacattcttgttgaacatgttagcctggccttttgattaggggaacaaaaaagtagggatatcatttggaaaagtagggcattttct |
50629937 |
T |
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| Q |
318 |
nnnnnnnnnnncccctttacctcgtgatagtttggataaggttgtcatgaatatattcctctgtaatgtaatgtacatccaagtatatggacccagattt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50629938 |
tttttccttttcccctttacctcgtgatagtttggataaggttgtcatgaatatattcctctgtaatgtaatgtacatccaagtatatggacccagattt |
50630037 |
T |
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| Q |
418 |
attcaaaagtacatgagtttactggtttgttatattgcatgtgttgggtaggtaatac |
475 |
Q |
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| T |
50630038 |
attcaaaagtacatgagtttactggtttgttatattgcatgtgttgggtaggtaatac |
50630095 |
T |
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