View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_low_5 (Length: 492)
Name: NF18208_low_5
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 40078251 - 40078720
Alignment:
| Q |
1 |
atttataattgtcatgtgcactctgtatctagctgtataataagaatcttgatagccattcttctcctgaaacaagagaaacgcctgggcaaccatgggc |
100 |
Q |
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| T |
40078251 |
atttataattgtcatgtgcactatgtatctagctgtataataagaatcttgatagccattcttctcctgaaacaagagaaacgcctgggcaaccatgggc |
40078350 |
T |
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| Q |
101 |
aagaggctgggatgatataaagaaatattgttcggggacggaaaggcccccatgctggtttataataagcttgggtatcaatgatattgtctttgtaaca |
200 |
Q |
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| T |
40078351 |
aagaggctgggatgatataaagaaatatttttcggggacggaaaggcccccatgctggtttataataagcttgggtatcaatgatattgtctttgtaaca |
40078450 |
T |
|
| Q |
201 |
ataaattgaatttttgtataccatctttgtcaacttgaaggtttgttttaggctagtaggctagctactagaaatcagtaaaagaataaaacgagtgaaa |
300 |
Q |
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| T |
40078451 |
ataaattgaatttttgtataccatctttgtcaacttgaaggtttgttttaggctagtaggctagctactagaaatcagtaaaagaataaaacgagtg-aa |
40078549 |
T |
|
| Q |
301 |
aagtagaaaattgcgatttcgctttcaatgaacctttgttattatgtattcatctactatgtacctacctattgctggtggctgtatcatatatgttata |
400 |
Q |
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| T |
40078550 |
aagtagaaaattgcgatttcgctttcaatgaacctttgttattatgtattcatctactatg----tacctattgctggtggctgtatcatatatgttata |
40078645 |
T |
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| Q |
401 |
gcttaaaacgcttgattgcggannnnnnnnnncctgttctaatagttgatctcagacaccaataaaacaaaataat |
476 |
Q |
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| T |
40078646 |
gcttaaaacgcttgattgtgga-tttttttttcctgttctaatagttgatctcagacaccaataaaacaaaataat |
40078720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 40072978 - 40073149
Alignment:
| Q |
42 |
aagaatcttgatagccattcttctcctgaaacaagagaaacgcctgggcaaccatgggcaagaggctgggatgatataaagaaatattgttcggggacgg |
141 |
Q |
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| T |
40072978 |
aagaatcttgatagccattcttctcctgaaacaagagctacacctgggaaaccatgggtaagaggctgggatgatatacagaaat----ttcgggg---- |
40073069 |
T |
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| Q |
142 |
aaaggcccccatgctggtttataataagcttgggtatcaatgatattgtctttgtaacaataaattgaatttttgtataccat |
224 |
Q |
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| T |
40073070 |
--aggccccagtgctgg-gaatcagtagcttgggtataaatgatactatctttgtaacaataaattgaattcgtgtataccat |
40073149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 231 - 340
Target Start/End: Original strand, 40073181 - 40073284
Alignment:
| Q |
231 |
caacttgaaggtttgttttaggctagtaggctagctactagaaatcagtaaaagaataaaacgagtgaaaaagtagaaaattgcgatttcgctttcaatg |
330 |
Q |
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| T |
40073181 |
caacttgaaggtttgttttagactagtag-----ctactagatatcagtaaaagaataaaaggagtg-aaaagtagaagattgcggtttcgctttcagtg |
40073274 |
T |
|
| Q |
331 |
aacctttgtt |
340 |
Q |
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| T |
40073275 |
aacctttgtt |
40073284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 44971781 - 44971858
Alignment:
| Q |
48 |
cttgatagccattcttctcctgaaacaagagaaacgcctgggcaaccatgggcaagaggctgggatgatataaagaaa |
125 |
Q |
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||||| ||||||||| |||||||||| |||| ||| | ||| || ||||||| |||||| ||||||||||| |||||| |
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| T |
44971781 |
cttgacagccattctgctcctgaaactagagcaacacttggccagccatgggtaagaggttgggatgatattaagaaa |
44971858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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