View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18208_low_7 (Length: 463)
Name: NF18208_low_7
Description: NF18208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18208_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 53502927 - 53502496
Alignment:
| Q |
16 |
aagaacctgattttattataaaaaagatgttacacatttgatgaatggctgcaaatgtttcctagtgtgatgacagagatcaaaacgaatgaaagaatca |
115 |
Q |
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| T |
53502927 |
aagaacctgtttttattataaaaaagatgttacacatttgatgaatggctacaaatgtttcctagcgtgatgacagagatcaaaacgaatgaaagaatca |
53502828 |
T |
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| Q |
116 |
tactaagctacaaactaatgctagaattgcagtgataatggggaaatatta--gaggggttgcacagttttctctttacgagtggttgcactctggaggt |
213 |
Q |
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| T |
53502827 |
tactaagctacaaactaatgctagaattgcagtgataatggggaaatattacagaggggttgcacagttttctctttacgagtggttgcactctggaggt |
53502728 |
T |
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| Q |
214 |
aaaccctgtggaaatcgttttgtatctttgcagtaattgtatatcatgtaattcttctgcacccatttcaacctcccttgaccagtagcatccaactcct |
313 |
Q |
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| T |
53502727 |
aaaccctgtggaaatcgttttgtatctttgcagtaattgtatatcatgtaattcttctgcacccatttcaacctcccttgaccagtagcatccaactcct |
53502628 |
T |
|
| Q |
314 |
gtgaaagccatgaacctctggcagagtcctttgatgcagaactagttgaaccacaggatgatgctcctgaagaccagatgcaagcctgagcattaaaatt |
413 |
Q |
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| T |
53502627 |
gtgaaagccatgaacctctggcagagtcctttgatgcagaactagttgaaccacaggatgatgctcctgaagaccagatgcaagcctgagcattaaaatt |
53502528 |
T |
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| Q |
414 |
tctgtaggaagctgtgaatggagcctttgtcc |
445 |
Q |
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| T |
53502527 |
tctgtaggaagctgtgaatggagcctttgtcc |
53502496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 53488484 - 53488524
Alignment:
| Q |
241 |
ttgcagtaattgtatatcatgtaattcttctgcacccattt |
281 |
Q |
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| T |
53488484 |
ttgcagtaattgtaaatcatgtaattcttctggacccattt |
53488524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 52591329 - 52591272
Alignment:
| Q |
223 |
ggaaatcgttttgtatctttgcagtaattgtatatcatgtaattcttctgcacccatt |
280 |
Q |
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| T |
52591329 |
ggaaatcgcttagtatcagtgcaataattgtaaatcatgtaattcttttgcacccatt |
52591272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 37189222 - 37189125
Alignment:
| Q |
216 |
accctgtggaaatcgttttgtatctttgcagtaattgtatatcatgtaattcttctgcacccatttcaacctcccttgaccagtagcatccaactcct |
313 |
Q |
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| T |
37189222 |
accctgaggaaatcttttggtatcagtgcagtagttgtagatcatataattcttctgcacccacttgagcctctcatgacttgtagaatccaactcct |
37189125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 16942944 - 16942908
Alignment:
| Q |
242 |
tgcagtaattgtatatcatgtaattcttctgcaccca |
278 |
Q |
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| T |
16942944 |
tgcagtaattatatatcatgtaattcttttgcaccca |
16942908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 17013609 - 17013573
Alignment:
| Q |
242 |
tgcagtaattgtatatcatgtaattcttctgcaccca |
278 |
Q |
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| T |
17013609 |
tgcagtaattatatatcatgtaattcttttgcaccca |
17013573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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