View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18209_high_1 (Length: 350)
Name: NF18209_high_1
Description: NF18209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18209_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 333
Target Start/End: Complemental strand, 42975661 - 42975334
Alignment:
| Q |
9 |
agcacagacaatgacggagctaacataaattttacgagggggccaattggccaaatataaagaagaatgaataaactacatctaaaaactaatatattaa |
108 |
Q |
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| T |
42975661 |
agcacagacaatgatggagctaacataaattttacgagggggccaattggccaaatataaagaagaatgaataaactacatctaaaaactaatatattaa |
42975562 |
T |
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| Q |
109 |
atttaaccgataactgggggaaaaactatacgcggaaaatttcagaagaattttttcttatatgaaatcaaaaattaaaacttcactaagataataagaa |
208 |
Q |
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| T |
42975561 |
gtttaaccgataactgggggaaaaactatacgcggaaaatttcagaagaattttttcttatattaaatcgaaaattaaaacttcactaagataataagag |
42975462 |
T |
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| Q |
209 |
agttcttt---nnnnnnnnctatttaggaaagttgagctcgacaacgcgtctaagagtaaatttcatccatagttgactttgtaacaaacaaactaacaa |
305 |
Q |
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| T |
42975461 |
agttctttaaaaaaaaaaactatttaggaaagttgagctcgacaacgcgtctaagagtaaatttcatccatagttgactttgtaacaaacaaactaacaa |
42975362 |
T |
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| Q |
306 |
tgtctttttcaaggtaaacagctgatct |
333 |
Q |
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| T |
42975361 |
tgtctttttcaaggtaaacagctgatct |
42975334 |
T |
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