View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_high_10 (Length: 519)
Name: NF18211_high_10
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 36 - 501
Target Start/End: Complemental strand, 39774300 - 39773830
Alignment:
| Q |
36 |
taatcatatcctttcttaaaacttacgggactacagattcaccaccactaaaaatttggaagtttaattttgagactaaatacaaatatgttgaggnnnn |
135 |
Q |
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| T |
39774300 |
taatcatatcctttcttaaaatttacaggactacagattcaccaccactaaaaatttggaagtttaattttgagactaaatacaaatatgttgaggaaaa |
39774201 |
T |
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| Q |
136 |
nnntaaccattgaagtctttatccttaaaaatcacaagacaatctcaataattttatttttagtagttcctaagacatgacattgagtttgaatatatgt |
235 |
Q |
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| T |
39774200 |
aaataaccattgaagtctttatccttaaaaatcacaagacaatctcaataattttatttttagtagttcctaagacatgacattgagtttgaatatatgt |
39774101 |
T |
|
| Q |
236 |
gaacttgtcata-cacccttacaaaatattttgannnnnnnnagggataatggttaatagtcgtagataggtgattggcttttgtttacatggtcattag |
334 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
39774100 |
gaacttgtcataccacccttacaaaatattttgattttttttagggataatggttaatagccgtagataagtgattggcttttgtttacatggtcattag |
39774001 |
T |
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| Q |
335 |
cgacaagtgtgaaggtttgactttgattcaagtgttcactttgatttttgtggttagatttctggtgatatccctaaatttatgtggtct-----ttggt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| ||||| |
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| T |
39774000 |
cgacaagtgtgaaggtttgactttgattcaagtgttcactttgatttttgtggttagatttccggtgatagccctaaatttatatggtctttctattggt |
39773901 |
T |
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| Q |
430 |
gttgttatgattttcttttggatgtttcgtctatatacagtatctattttttatagttactgtctcctagtt |
501 |
Q |
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| T |
39773900 |
ggtgttatgattttcttttggatgtttcgtttatata-tgtgtctgttttttatagttactgtctcctagtt |
39773830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 397
Target Start/End: Complemental strand, 34573191 - 34573145
Alignment:
| Q |
351 |
ttgactttgattcaagtgttcactttgatttttgtggttagatttct |
397 |
Q |
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|||||||||||| ||||||| |||||||||| |||||||||||||| |
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| T |
34573191 |
ttgactttgatttaagtgttgactttgatttaagtggttagatttct |
34573145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 34572362 - 34572321
Alignment:
| Q |
425 |
ttggtgttgttatgattttcttttggatgtttcgtctatata |
466 |
Q |
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| T |
34572362 |
ttggtgttgttatggttttcttttggatgttccgtccatata |
34572321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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