View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_high_13 (Length: 472)
Name: NF18211_high_13
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Complemental strand, 34613247 - 34612800
Alignment:
| Q |
16 |
caacaaacacactgccataggggatgataatgctccacttcttcccaaaaactcttcaattgagtataataatcaataacagaagtattaccttgacgta |
115 |
Q |
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| T |
34613247 |
caacaaacacactgccataggggatgataatgctccacttcttcccaaaaactcttcaattgagtataataatcaataacagaagtattaccttgacgta |
34613148 |
T |
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| Q |
116 |
aagaggaaatactatcatgtaatcgttctggcggttcattcagaacatcaacaacattatcaagaaataccgcgttttgagcgaaatgtagagaagccga |
215 |
Q |
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| T |
34613147 |
aagaggaaatactatcatgtaatcgttctggcggttcattcagaacatcaacaacattatcaagaaataccgcgttttgagcgaaatgtggagaagccga |
34613048 |
T |
|
| Q |
216 |
agaaatgagccatgattgaatcatattgttgaagcattcccacgcctcgtagttgagatctcgagaagttaaaacaacgatctaccatcaacaaattggt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34613047 |
agaaatgagccatgattgaatcatattgttgaagcattcccacacctcgtagttgagatctcgagaagttaaaacagcgatctaccatcaacaaattggt |
34612948 |
T |
|
| Q |
316 |
atttgttcatgag---gaacaaagcccgtttcatagaacgggtccaaacattataattggaaccggtgtgaagttgcaaaattatcactgaagtgggact |
412 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34612947 |
atttgttcatgaggaagaacaaagcccgtttcatagaacgggtccaaacattataattggaaccggtgtgaagttgcaaaattatcactgaagtgggact |
34612848 |
T |
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| Q |
413 |
ctcactcggacgaatatagaaaggattggcttgaatctcagaaatctg |
460 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34612847 |
ctcacttggacgaatatagaaaggattggcctgaatctcagaaatctg |
34612800 |
T |
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