View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_high_17 (Length: 363)
Name: NF18211_high_17
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 28873531 - 28873192
Alignment:
| Q |
16 |
atcattgacatcatctctcctttatctttggcactaaaatacattccacgtgggcgtctatataacccacaataattttgacacactaacccaactgtag |
115 |
Q |
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| T |
28873531 |
atcattgacatcatctctcctttatctttggcactaaaatacattccacgtgggcgtctatataacccacaataattttgacacactaacccaactgtag |
28873432 |
T |
|
| Q |
116 |
gagtataaattattggagcaaattctttgatgttatcaataagtgcctgaagagaatgaaaggtaacaacataagaaccatttggaaataaatgttacca |
215 |
Q |
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| T |
28873431 |
gagtataaattattggagcaaattctttgatgttatcaataagtgcctgaagagaatgaaaggtaacaacataagaaccatttggaaataaatgttacca |
28873332 |
T |
|
| Q |
216 |
tattttctcacataacagcctaatttcatcatcagactcactctatagtacaatgtctcattcctgtcatgtagtctatttaagatcctccatttagata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28873331 |
tattttctcacataacagcctaatttcatcatcagactcactctatagtacaatgtctcattcctgtcatgtagtctatttaagatcctccatttggata |
28873232 |
T |
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| Q |
316 |
aggaaacaattttatctgactggccatgggtattcatctc |
355 |
Q |
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| T |
28873231 |
aggaaacaattttatctgactggccatgggtattcttctc |
28873192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 12022945 - 12023122
Alignment:
| Q |
16 |
atcattgacatcatctctcctttatctttggcactaaaatacattccacgtgggcgtctatataacccacaataattttgacacactaacccaactgtag |
115 |
Q |
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| T |
12022945 |
atcattgacatcatctctcctttgtctttggcactaaaatacattccacgtggccgtctaaataaccctgaataattttgacacactaatccaactgtag |
12023044 |
T |
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| Q |
116 |
gagtataaattattggagcaaattctttgatgttatcaataagtgcctgaag-agaatgaaaggtaacaacataagaa |
192 |
Q |
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||||||| |||||||||||||| ||||| || ||||||||||| ||||||| | || |||| ||| ||||||||||| |
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| T |
12023045 |
gagtatatattattggagcaaactctttaatattatcaataagaacctgaagaaaaacgaaatgtaccaacataagaa |
12023122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 12023205 - 12023269
Alignment:
| Q |
246 |
atcagactcactctatagtacaatgtctcattcctgtcatgtagtctatttaagatcctccattt |
310 |
Q |
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| T |
12023205 |
atcaaactcactctgtagtacaaagtttcgttcctgtcatgcagtctatttaagattctccattt |
12023269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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