View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_high_2 (Length: 843)
Name: NF18211_high_2
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_high_2 |
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| [»] scaffold0455 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 12 - 572
Target Start/End: Complemental strand, 41420069 - 41419509
Alignment:
| Q |
12 |
cacagacacaatacttgatggcaaaaatgttgtctgatgacgagttcgttgaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacaaaat |
111 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41420069 |
cacagacacaatacttgatggcgaaaatgctgtctgatgacgagttcgttaaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacagaat |
41419970 |
T |
|
| Q |
112 |
tttcactagtggattaaccaaagttggaattaattgtttacaaagtaacggtggactttttgtgtggatggatttgagaggacttcttaaggaagctaca |
211 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41419969 |
tttcaccagtggattaaccaaagttggaattaattgtttacaaagtaacggtggactttttgtgtggatggatttgagaggacttcttaaggaagctaca |
41419870 |
T |
|
| Q |
212 |
tttgaatcagaattggaactatggagagtgattattcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggttta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41419869 |
tttgaatcagaattggaactatggagagtgattattcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggttta |
41419770 |
T |
|
| Q |
312 |
gagtgtgttatgctaacatggatgatagagatgtgcaaattgctttacaaaggattaggtcatttgtggttcagaataataaggaggttatggtgtctga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41419769 |
gagtgtgttatgctaacatggatgatagagatgtgcaaattgctttacaaaggattaggtcatttgtggttcagaataataaggaggttatggtgtctga |
41419670 |
T |
|
| Q |
412 |
gaataacactaaaccttgttggcatagtaatttgaggttaagccttaaaacaagaaggtttgatgatattgtaatgtcacctcattctccatttcctcag |
511 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41419669 |
gaagaacactaaaccttgttggcatagtaatttgaggttaagccttaaaacaagaaggtttgatgatattgtaatgtcacctcattctccatttcctcag |
41419570 |
T |
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| Q |
512 |
tcacctcttgttaaagccactacttgaattatttagcatatagaagaagtaataactgata |
572 |
Q |
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| T |
41419569 |
tcacctcttgttaaagccactacttgaattatttagcatatagaagaagtaataactgata |
41419509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 614 - 831
Target Start/End: Complemental strand, 41419466 - 41419249
Alignment:
| Q |
614 |
ggaaaccacatgttgtgttcctttaatgttgggggcannnnnnnnnnnnncacttactgaatcacattggtttgtggtgaaagaagttcatagaatttgt |
713 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41419466 |
ggaaaccacatgttgtgttcctttaatgttgggggcattttttcttttttcacttactgaatcacattggtttgtggtgaaagaagttcatagaattttt |
41419367 |
T |
|
| Q |
714 |
aaggtcaatgatgaatgaattgttaataaacttcttcaattattctacatgttttattgttgttttataaactgttaaagataaatcaactttagatttg |
813 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41419366 |
aaggtcaatgatgaatgaattgttaataaacttcttcaattattctacatgttttattgttgttttataaactgttaaagataaatcaactttagatttg |
41419267 |
T |
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| Q |
814 |
tactagtatgataatgat |
831 |
Q |
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|||||||||||||||||| |
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| T |
41419266 |
tactagtatgataatgat |
41419249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 47 - 403
Target Start/End: Complemental strand, 8518 - 8163
Alignment:
| Q |
47 |
gatgacgagttcgttgaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacaaaattttcactagtggattaaccaaagttggaattaatt |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8518 |
gatgacgagttcgttgaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacaaaattttcactagtggattaaccaaagttggaattaatt |
8419 |
T |
|
| Q |
147 |
gtttacaaagtaacggtggactttttgtgtggatggatttgagaggacttcttaaggaagctacatttgaatcagaattggaactatggagagtgattat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8418 |
gtttacaaagtaacggtggactttttgtgtggatggatctgagaggacttcttaaggaagctacatttgaatcagaattggaactatggagagtgattat |
8319 |
T |
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| Q |
247 |
tcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggtttagagtgtgttatgctaacatggatgatagagatgtg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8318 |
tcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggtttagagtgtgttatgctaacatggatgatagaaatgtg |
8219 |
T |
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| Q |
347 |
caaattgctttacaaaggattaggtcatttgtggttcagaataataaggaggttatg |
403 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
8218 |
aaaatttctttacaaaggattaggtcatttgtggttcaaaat-ataaggaggttatg |
8163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 47 - 403
Target Start/End: Complemental strand, 28129931 - 28129576
Alignment:
| Q |
47 |
gatgacgagttcgttgaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacaaaattttcactagtggattaaccaaagttggaattaatt |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129931 |
gatgacgagttcgttgaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacaaaattttcactagtggattaaccaaagttggaattaatt |
28129832 |
T |
|
| Q |
147 |
gtttacaaagtaacggtggactttttgtgtggatggatttgagaggacttcttaaggaagctacatttgaatcagaattggaactatggagagtgattat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129831 |
gtttacaaagtaacggtggactttttgtgtggatggatctgagaggacttcttaaggaagctacatttgaatcagaattggaactatggagagtgattat |
28129732 |
T |
|
| Q |
247 |
tcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggtttagagtgtgttatgctaacatggatgatagagatgtg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28129731 |
tcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggtttagagtgtgttatgctaacatggatgatagaaatgtg |
28129632 |
T |
|
| Q |
347 |
caaattgctttacaaaggattaggtcatttgtggttcagaataataaggaggttatg |
403 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
28129631 |
aaaatttctttacaaaggattaggtcatttgtggttcaaaat-ataaggaggttatg |
28129576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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