View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_high_25 (Length: 204)
Name: NF18211_high_25
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_high_25 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 3353999 - 3354170
Alignment:
| Q |
1 |
aaagaaacatttatattgaaaacannnnnnnccacatttaagacttcgaatacacaagtttcaagatattcatactatatttgtttccttaactaaaata |
100 |
Q |
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| T |
3353999 |
aaagaaacatttatattgaaaacatttttttacatatttaagacttcgaatacacaagtttcaagatattcatactatatttgtttccttaactaaaata |
3354098 |
T |
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| Q |
101 |
acatagtaatttctcctctgccgagttgtaggttccttatccatatatacaagttttttcactgagcttgtccaat |
176 |
Q |
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| T |
3354099 |
acaaagtaatttctcctctgccgagttgtaggttccttatcc----atacaagttttttcactgtgcttgtccaat |
3354170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 29958274 - 29958332
Alignment:
| Q |
37 |
tttaagacttcgaatacacaagtttcaagatattcatactatatttgtttccttaacta |
95 |
Q |
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| T |
29958274 |
tttaagagtttgactacagaagtttcaagatgtttttactatatttgtttccttaacta |
29958332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 77413 - 77370
Alignment:
| Q |
51 |
tacacaagtttcaagatattcatactatatttg-tttccttaac |
93 |
Q |
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| T |
77413 |
tacacaagtttcaagatactcatactatatttgatttccttaac |
77370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 31749498 - 31749445
Alignment:
| Q |
37 |
tttaagacttcgaatacacaagtttcaagatattcatactatatttgtttcctt |
90 |
Q |
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| T |
31749498 |
tttaatactttgaatacacaaatttcaagatatttttactatatatgtttcctt |
31749445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 44438021 - 44438066
Alignment:
| Q |
51 |
tacacaagtttcaagatattcatactatatttgtttccttaactaa |
96 |
Q |
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| T |
44438021 |
tacacaagttccaagaaattcttactatacttgtttccttaactaa |
44438066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 8867158 - 8867114
Alignment:
| Q |
51 |
tacacaagtttcaagatattcatactatatttgtttccttaacta |
95 |
Q |
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| T |
8867158 |
tacacaactttcaagaaatttctactatatttgtttccttaacta |
8867114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 7174210 - 7174254
Alignment:
| Q |
53 |
cacaagtttcaagatattcatactatattt-gtttccttaactaa |
96 |
Q |
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| T |
7174210 |
cacaagttccaagatattcatactatatttggtttccataactaa |
7174254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 25577860 - 25577904
Alignment:
| Q |
51 |
tacacaagtttcaagatattcatactatatttgtttccttaacta |
95 |
Q |
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| T |
25577860 |
tacacaagttccaagaaattcttactatacttgtttccttaacta |
25577904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 15873860 - 15873904
Alignment:
| Q |
51 |
tacacaagtttcaagatattcatactatatttgtttccttaacta |
95 |
Q |
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|||||||||||||||| |||| || |||||||||||| ||||||| |
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| T |
15873860 |
tacacaagtttcaagaaattcttattatatttgtttctttaacta |
15873904 |
T |
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