View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18211_high_6 (Length: 694)

Name: NF18211_high_6
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18211_high_6
NF18211_high_6
[»] chr6 (4 HSPs)
chr6 (121-675)||(20433009-20433565)
chr6 (154-677)||(20400815-20401340)
chr6 (4-85)||(20432902-20432983)
chr6 (1-85)||(20400442-20400528)
[»] chr7 (2 HSPs)
chr7 (121-188)||(3584111-3584178)
chr7 (121-183)||(13703282-13703344)
[»] chr4 (2 HSPs)
chr4 (121-188)||(4815856-4815923)
chr4 (135-188)||(10981670-10981723)
[»] chr8 (3 HSPs)
chr8 (136-181)||(16936360-16936405)
chr8 (121-188)||(15920032-15920099)
chr8 (9-85)||(26575368-26575444)
[»] chr2 (3 HSPs)
chr2 (121-181)||(33133693-33133753)
chr2 (121-188)||(14690135-14690202)
chr2 (1-85)||(24473468-24473552)
[»] chr1 (3 HSPs)
chr1 (121-189)||(11067124-11067192)
chr1 (1-85)||(21243082-21243167)
chr1 (121-181)||(40780780-40780840)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-85)||(18310-18394)
[»] chr3 (1 HSPs)
chr3 (123-175)||(22354749-22354801)


Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 121 - 675
Target Start/End: Original strand, 20433009 - 20433565
Alignment:
Q  121 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataac--agaaaaataagccaaaattcaatgaacataactaaa 218  Q
    ||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||   |||||   || | ||||||||||||||||||| |||    
T  20433009 aataacaggaacaatataatattattataggaaaatttacttaaggatataattggaataaacaagaaagtcaacctaaaattcaatgaacataaccaaa 20433108  T
Q  219 tttcaaatatctttaagaccaaaagacttatttacacaagctctttataggggggcttgtaagatgcacaaccttaatagagctatgattattacataaa 318  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||  ||||||||||||    
T  20433109 attcaaatatctttaagaacaaaagacttatttacacaagctctttataagggggcctgtaagatgcacaaccctaatagagctatttttattacataaa 20433208  T
Q  319 tattattcagtaaccctagcttggaaatttgattcaaactatagctttttcagattcagtagcatcaataaatacaaccctaaagggatcattttcagtt 418  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20433209 tattattcagtaaccctagcttggaaatttgattcaaactacagctttttcagattcagtagcatcaataaatacaaccctaaagggatcattttcagtt 20433308  T
Q  419 gggaccaaacgccatccattctcatctctatacctcccaatatcactacaagcaccaggtggagcactgaacaatggacaatacacaagcttgtatgctc 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20433309 gggaccaaacgccatccattctcatctctatacctcccaatatcactacatgcaccaggtggagcactgaacaatggacaatacacaagcttgtatgctc 20433408  T
Q  519 ctgatcctgaaccaagtgtctcaattttaaatttaccttgaaatgcatcaatattatcaccaatacctacccaagatgtagggaaatcatcatgagctag 618  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20433409 ctgatcctgaaccaagtgtctcaattttaaatttaccttgaaaagcatcaatattatcaccaatacctacccaagatgtagggaaatcatcatgagcaag 20433508  T
Q  619 aacccattttgcagattcagcacactttggtttcttaacaaactcaatatctacttc 675  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20433509 cacccatttggcagattcagcacactttggtttcttaacaaactcaatatctacttc 20433565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 154 - 677
Target Start/End: Original strand, 20400815 - 20401340
Alignment:
Q  154 aatttacctaaggatataattggaataacagaaaaat-aagccaaaattcaatgaacataactaaatttcaaatatctttaagaccaaaagacttattta 252  Q
    ||||||| |||||||||||||||||||||| |||  | || |||||||||||||||||||||  || ||||||||||||||||| | |||||||||||||    
T  20400815 aatttacttaaggatataattggaataacaaaaatgtcaacccaaaattcaatgaacataacccaaattcaaatatctttaagaactaaagacttattta 20400914  T
Q  253 cacaagctctttataggggggcttgtaagatgcacaacc-ttaatagagctatgattattacataaatattattcagtaaccctagcttggaaatttgat 351  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  20400915 cacaagctctttataggggggcttgtaagatgcacaacccttaatagagctatttttattacataaatattattcagtaaccctagcttggaaatttgat 20401014  T
Q  352 tcaaactatagctttttcagattcagtagcatcaataaatacaaccctaaagggatcattttcagttgggaccaaacgccatccattctcatctctatac 451  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20401015 tcaaactacagctttttcagattcagtagcatcaacaaatacaaccctaaagggatcattttcagttgggaccaaacgccatccattctcatctctatac 20401114  T
Q  452 ctcccaatatcactacaagcaccaggtggagcactgaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtctcaattttaaatt 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20401115 ctcccaatatcactacaagcaccaggtggagcactgaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtctcaattttaaatt 20401214  T
Q  552 taccttgaaatgcatcaatattatcaccaatacctacccaagatgtagggaaatcatcatgagctagaacccattttgcagattcagcacactttggttt 651  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20401215 taccttgaaatgcatcaatattatcaccaatacctacccaagatgtagggaagtcatcatgagctagaacccattttgcagattcagcacactttggttt 20401314  T
Q  652 cttaacaaactcaatatctacttcgt 677  Q
    |||||||||||||||||||| |||||    
T  20401315 cttaacaaactcaatatctagttcgt 20401340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 20432902 - 20432983
Alignment:
Q  4 gattgaagggaagagacaatgtagttatctataattcatttttaactggatgcacggtgaagagacattatggtgtgaaaga 85  Q
    |||||||||||||||||||| |||| | ||||||||||||||||| |||||| |||||||||||| | | ||||||||||||    
T  20432902 gattgaagggaagagacaatctagtaagctataattcatttttaattggatgtacggtgaagagatactgtggtgtgaaaga 20432983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 20400442 - 20400528
Alignment:
Q  1 atggattgaagggaagagacaatgtagttatctataattcatttttaactgg--atgcacggtgaagagacattatggtgtgaaaga 85  Q
    |||||| |||||||||||||||| |||||| ||||| |||||||||||||||  ||| ||   ||||||||||| ||||||||||||    
T  20400442 atggatggaagggaagagacaatctagttacctatagttcatttttaactggatatgtacatagaagagacattgtggtgtgaaaga 20400528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 3584178 - 3584111
Alignment:
Q  121 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataacagaaaa 188  Q
    |||||||| |||| |||||||||||||||||||||||| | ||||  |||||||||||||||| ||||    
T  3584178 aataacaccaacaatataatattattataagaaaatttgcttaagcgtataattggaataacaaaaaa 3584111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 13703344 - 13703282
Alignment:
Q  121 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataaca 183  Q
    ||||| || |||| ||||| ||||||||||||||||||   ||||||||||||||||||||||    
T  13703344 aataaaactaacaatataagattattataagaaaatttgtttaaggatataattggaataaca 13703282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 4815923 - 4815856
Alignment:
Q  121 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataacagaaaa 188  Q
    |||||||| |||| ||||| ||||||||| |||||||| | ||||| |||||||||||||||| ||||    
T  4815923 aataacaccaacaatataacattattatacgaaaatttgcttaagggtataattggaataacaaaaaa 4815856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 10981670 - 10981723
Alignment:
Q  135 tataatattattataagaaaatttacctaaggatataattggaataacagaaaa 188  Q
    ||||| ||||||||||||||||||   ||||| |||||||||||||||| ||||    
T  10981670 tataacattattataagaaaatttgtttaagggtataattggaataacaaaaaa 10981723  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 16936405 - 16936360
Alignment:
Q  136 ataatattattataagaaaatttacctaaggatataattggaataa 181  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||    
T  16936405 ataatattattataagaaaatttatttaagggtataattggaataa 16936360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 15920099 - 15920032
Alignment:
Q  121 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataacagaaaa 188  Q
    |||||||| |||| ||||| ||||||||||||||||||   ||||| ||||||| |||||||| ||||    
T  15920099 aataacaccaacaatataacattattataagaaaatttgtttaagggtataattagaataacaaaaaa 15920032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 26575368 - 26575444
Alignment:
Q  9 aagggaagagacaatgtagttatctataattcatttttaactggatgcacggtgaagagacattatggtgtgaaaga 85  Q
    ||||||| ||||||| ||||||  |||| |||||||| |||| |||| ||||| ||||| || | ||||||||||||    
T  26575368 aagggaacagacaatctagttaggtatagttcattttgaactcgatgtacggtcaagaggcagtgtggtgtgaaaga 26575444  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 33133693 - 33133753
Alignment:
Q  121 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataa 181  Q
    |||||||| |||| || ||||||||||||  ||||||||  ||||||||||||||||||||    
T  33133693 aataacaccaacaataaaatattattatagaaaaatttatttaaggatataattggaataa 33133753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 14690135 - 14690202
Alignment:
Q  121 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataacagaaaa 188  Q
    |||||||| |||| ||||| ||||||||| |||||| |   ||||| |||||||||||||||||||||    
T  14690135 aataacaccaacaatataacattattataggaaaatatgtttaagggtataattggaataacagaaaa 14690202  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 24473552 - 24473468
Alignment:
Q  1 atggattgaagggaagagacaatgtagttatctataattcatttttaactggatgcacggtgaagagacattatggtgtgaaaga 85  Q
    |||||||||||| |||||||||  ||||||  |||||| |||||| | | ||||| |||||||||||  | | ||||||||||||    
T  24473552 atggattgaaggaaagagacaacctagttaggtataatccattttgagcgggatgtacggtgaagaggtagtgtggtgtgaaaga 24473468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 11067124 - 11067192
Alignment:
Q  121 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataacagaaaaa 189  Q
    |||||||| |||| ||||| |||||||| | ||| ||||  |||||||||||||||||||||| |||||    
T  11067124 aataacaccaacaatataacattattattaaaaattttatttaaggatataattggaataacaaaaaaa 11067192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 21243082 - 21243167
Alignment:
Q  1 atggattgaagggaagagacaatgtagttatctataattcatttttaactggatgcacggtgaagagacatt-atggtgtgaaaga 85  Q
    ||||||||||||||||||||||| ||||||  |||| |||||||| ||  ||||| | |||||| || ||||  ||||||||||||    
T  21243082 atggattgaagggaagagacaatctagttaggtatagttcattttaaatgggatgtatggtgaaaaggcattggtggtgtgaaaga 21243167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 40780840 - 40780780
Alignment:
Q  121 aataacacgaacagtataatattattataagaaaatttacctaaggatataattggaataa 181  Q
    |||||||| |||| |||||||||||||||  ||||||||  ||| ||| ||||||||||||    
T  40780840 aataacaccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataa 40780780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 18394 - 18310
Alignment:
Q  1 atggattgaagggaagagacaatgtagttatctataattcatttttaactggatgcacggtgaagagacattatggtgtgaaaga 85  Q
    |||||||||| |||| ||||||| ||||||  || | |||||||  ||||||||||||||| |||||  | | ||||||||||||    
T  18394 atggattgaaaggaatagacaatctagttaggtagagttcatttcaaactggatgcacggtaaagaggtagtgtggtgtgaaaga 18310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 22354749 - 22354801
Alignment:
Q  123 taacacgaacagtataatattattataagaaaatttacctaaggatataattg 175  Q
    |||||| |||| ||||| |||||||||| ||||||||  ||||||||||||||    
T  22354749 taacaccaacaatataacattattataataaaatttatttaaggatataattg 22354801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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