View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18211_high_7 (Length: 610)

Name: NF18211_high_7
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18211_high_7
NF18211_high_7
[»] chr7 (7 HSPs)
chr7 (294-499)||(6225823-6226027)
chr7 (224-306)||(6226088-6226170)
chr7 (302-388)||(6263131-6263211)
chr7 (101-145)||(36718242-36718286)
chr7 (104-146)||(3868180-3868222)
chr7 (94-146)||(6222282-6222333)
chr7 (102-145)||(36719016-36719058)
[»] chr4 (8 HSPs)
chr4 (101-146)||(46258590-46258635)
chr4 (103-146)||(28910975-28911018)
chr4 (232-305)||(6428082-6428155)
chr4 (232-305)||(8328052-8328125)
chr4 (102-134)||(2357703-2357735)
chr4 (104-144)||(7982798-7982838)
chr4 (237-305)||(18628486-18628554)
chr4 (102-134)||(28909872-28909904)
[»] chr6 (1 HSPs)
chr6 (99-146)||(4175876-4175923)
[»] chr5 (3 HSPs)
chr5 (106-144)||(2413215-2413253)
chr5 (102-144)||(2414401-2414443)
chr5 (232-275)||(10907442-10907485)
[»] chr8 (1 HSPs)
chr8 (222-299)||(7918385-7918462)
[»] chr1 (6 HSPs)
chr1 (102-146)||(270654-270698)
chr1 (95-146)||(14940443-14940494)
chr1 (95-146)||(14950450-14950501)
chr1 (95-146)||(14954691-14954742)
chr1 (102-146)||(14939006-14939050)
chr1 (102-146)||(14944250-14944294)
[»] chr3 (2 HSPs)
chr3 (95-146)||(16728965-16729016)
chr3 (103-145)||(13618738-13618780)
[»] chr2 (2 HSPs)
chr2 (222-305)||(28803463-28803546)
chr2 (103-146)||(35413579-35413622)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 2e-88; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 294 - 499
Target Start/End: Complemental strand, 6226027 - 6225823
Alignment:
Q  294 taagctcaaatattgaatcatttgaatattgataatactcaaactcaagtatgtactgttcccattctgagtatatctaatggaataatttgtttctgaa 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6226027 taagctcaaatattgaatcatttgaatattgataatactcaaactcaagtatgtacagttcccattctgagtatatctaatggaataatttgtttctgaa 6225928  T
Q  394 tcgccatgttctattccgatctgatgtatattctttgtgttaagtttactagaatgtaaaaatctaattatttttcagtgaaaacggataatattaaacc 493  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| |||||||||     
T  6225927 tcgccatgtactattctgatcttatgtatattctttgtgttaag-ttactagaatattaaaatctaattatttttcagtgaaaacggattatattaaaca 6225829  T
Q  494 aaactg 499  Q
    ||||||    
T  6225828 aaactg 6225823  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 6226170 - 6226088
Alignment:
Q  224 cttatgagcatgacataagttgttttcatatgctcttccaaaatgtctcacatgttcttattccattagataagctcaaatat 306  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  6226170 cttatgagcatgacattagttgttttcatatgcttttccaaaatgtctggcatgttcttattccattagataagctcaaatat 6226088  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 6263211 - 6263131
Alignment:
Q  302 aatattgaatcatttgaatattgataatactcaaactcaagtatgtactgttcccattctgagtatatctaatggaataatttgttt 388  Q
    ||||||||||||||||||||||||||||||||||      ||||| ||| ||||||||||||||||||||||||||||| |||||||    
T  6263211 aatattgaatcatttgaatattgataatactcaa------gtatgcactattcccattctgagtatatctaatggaatactttgttt 6263131  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 36718242 - 36718286
Alignment:
Q  101 tagagattaattagaatagactgacagtgtaaaataattttacac 145  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  36718242 tagagattaattagaatagactgacattgtaaaacaattttacac 36718286  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 3868180 - 3868222
Alignment:
Q  104 agattaattagaatagactgacagtgtaaaataattttacact 146  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  3868180 agattaattagaatagactgacagtgtaaaacaattttgcact 3868222  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 6222333 - 6222282
Alignment:
Q  94 attattatagagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    ||||||||||||||||||||||||||| ||||| ||| || ||||||||||||    
T  6222333 attattatagagattaattagaatagaatgacaatgt-aattaattttacact 6222282  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 36719058 - 36719016
Alignment:
Q  102 agagattaattagaatagactgacagtgtaaaataattttacac 145  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||    
T  36719058 agagattaattagaatagactgaca-tgtaaaacaattttacac 36719016  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 46258635 - 46258590
Alignment:
Q  101 tagagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||    
T  46258635 tagagattaattagaatagactgacaatgtaaaataactttacact 46258590  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 28911018 - 28910975
Alignment:
Q  103 gagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  28911018 gagattaattagaatagactgacagtgtaaaacaaatttacact 28910975  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 6428082 - 6428155
Alignment:
Q  232 catgacataagttgttttcatatgctcttccaaaatgtctcacatgttcttattccattagataagctcaaata 305  Q
    |||| |||||||||||||||||  ||||  |||| ||||||||| || ||||| ||| || |||||||||||||    
T  6428082 catgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaata 6428155  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 8328125 - 8328052
Alignment:
Q  232 catgacataagttgttttcatatgctcttccaaaatgtctcacatgttcttattccattagataagctcaaata 305  Q
    |||| ||||| ||||||||||| ||| |||||||  |||||| | || ||||| ||| ||||||||||||||||    
T  8328125 catgtcataaattgttttcataagctattccaaacagtctcataagtgcttatgccaatagataagctcaaata 8328052  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 2357703 - 2357735
Alignment:
Q  102 agagattaattagaatagactgacagtgtaaaa 134  Q
    ||||||||||||||||||||| |||||||||||    
T  2357703 agagattaattagaatagactaacagtgtaaaa 2357735  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 7982838 - 7982798
Alignment:
Q  104 agattaattagaatagactgacagtgtaaaataattttaca 144  Q
    ||||||||||||||||||||||| ||||||| || ||||||    
T  7982838 agattaattagaatagactgacaatgtaaaacaactttaca 7982798  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 18628554 - 18628486
Alignment:
Q  237 cataagttgttttcatatgctcttccaaaatgtctcacatgttcttattccattagataagctcaaata 305  Q
    ||||||||||||||||| ||||| |||||  |||||||| ||  ||||  || ||||||||||||||||    
T  18628554 cataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaata 18628486  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 28909872 - 28909904
Alignment:
Q  102 agagattaattagaatagactgacagtgtaaaa 134  Q
    |||||||||||||||||||||||| ||||||||    
T  28909872 agagattaattagaatagactgacggtgtaaaa 28909904  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 4175923 - 4175876
Alignment:
Q  99 tatagagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    |||||||||||||| ||||||||||||||||||||| || ||||||||    
T  4175923 tatagagattaatttgaatagactgacagtgtaaaacaactttacact 4175876  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 2413215 - 2413253
Alignment:
Q  106 attaattagaatagactgacagtgtaaaataattttaca 144  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  2413215 attaattagaatagactgacagtgtaaaataaatttaca 2413253  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 2414443 - 2414401
Alignment:
Q  102 agagattaattagaatagactgacagtgtaaaataattttaca 144  Q
    |||||||||||| ||||||||||||||||||||||| ||||||    
T  2414443 agagattaattataatagactgacagtgtaaaataagtttaca 2414401  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 10907442 - 10907485
Alignment:
Q  232 catgacataagttgttttcatatgctcttccaaaatgtctcaca 275  Q
    |||||||||||||||||||||| |||||||||||  ||||||||    
T  10907442 catgacataagttgttttcataagctcttccaaacagtctcaca 10907485  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 7918462 - 7918385
Alignment:
Q  222 agcttatgagcatgacataagttgttttcatatgctcttccaaaatgtctcacatgttcttattccattagataagct 299  Q
    ||||||||| |||| | ||||||||||||||| ||||| |||||  ||||| ||| | ||||| ||||||||||||||    
T  7918462 agcttatgaacatgtcttaagttgttttcataagctctcccaaacagtctctcatctgcttatgccattagataagct 7918385  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 270698 - 270654
Alignment:
Q  102 agagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||    
T  270698 agagattaattagaatagactaacggtgtaaaataagtttacact 270654  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 14940494 - 14940443
Alignment:
Q  95 ttattatagagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    |||||| ||||||||||||||||| ||||||||| |||||||| | ||||||    
T  14940494 ttattagagagattaattagaataaactgacagtataaaataagtctacact 14940443  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 14950501 - 14950450
Alignment:
Q  95 ttattatagagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    |||||| ||||||||||||||||| ||||||||| |||||||| | ||||||    
T  14950501 ttattagagagattaattagaataaactgacagtataaaataagtctacact 14950450  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 14954742 - 14954691
Alignment:
Q  95 ttattatagagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    |||||| ||||||||||||||||| ||||||||| |||||||| | ||||||    
T  14954742 ttattagagagattaattagaataaactgacagtataaaataagtctacact 14954691  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 14939006 - 14939050
Alignment:
Q  102 agagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    |||||||||||||||||||  |||| ||||||| |||||||||||    
T  14939006 agagattaattagaatagatcgacaatgtaaaacaattttacact 14939050  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 14944250 - 14944294
Alignment:
Q  102 agagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    |||||||||||||||||||  |||| ||||||| |||||||||||    
T  14944250 agagattaattagaatagatcgacaatgtaaaacaattttacact 14944294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 16729016 - 16728965
Alignment:
Q  95 ttattatagagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    |||||| |||||||||||| |||||| ||||||||||||| || ||||||||    
T  16729016 ttattaaagagattaattaaaatagattgacagtgtaaaacaactttacact 16728965  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 13618780 - 13618738
Alignment:
Q  103 gagattaattagaatagactgacagtgtaaaataattttacac 145  Q
    |||||||||||||||||| ||||||||||||| || |||||||    
T  13618780 gagattaattagaatagattgacagtgtaaaacaactttacac 13618738  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 28803546 - 28803463
Alignment:
Q  222 agcttatgagcatgacataagttgttttcatatgctcttccaaaatgtctcacatgttcttattccattagataagctcaaata 305  Q
    ||||||||  |||| |||||||||||| |||||| |||  ||||  ||||||||||| ||||| ||  ||||||||||||||||    
T  28803546 agcttatggacatgtcataagttgtttccatatgttctctcaaacagtctcacatgtgcttatgccggtagataagctcaaata 28803463  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 35413579 - 35413622
Alignment:
Q  103 gagattaattagaatagactgacagtgtaaaataattttacact 146  Q
    |||||||||||||||||||| ||||||||||| || ||||||||    
T  35413579 gagattaattagaatagactaacagtgtaaaacaactttacact 35413622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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