View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18211_low_1 (Length: 1088)

Name: NF18211_low_1
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18211_low_1
NF18211_low_1
[»] chr8 (8 HSPs)
chr8 (227-1072)||(37340456-37341305)
chr8 (14-156)||(37341376-37341518)
chr8 (66-153)||(25200477-25200564)
chr8 (31-156)||(14088827-14088956)
chr8 (309-495)||(14089167-14089353)
chr8 (31-74)||(5344885-5344929)
chr8 (261-333)||(27575639-27575711)
chr8 (430-481)||(1346806-1346857)
[»] chr2 (8 HSPs)
chr2 (262-577)||(32208677-32208991)
chr2 (256-502)||(12753045-12753285)
chr2 (362-577)||(32463057-32463272)
chr2 (350-561)||(15343957-15344168)
chr2 (89-156)||(12753396-12753464)
chr2 (347-470)||(25966644-25966767)
chr2 (31-74)||(3406910-3406954)
chr2 (673-723)||(32468175-32468225)
[»] chr3 (7 HSPs)
chr3 (272-577)||(27990409-27990714)
chr3 (581-747)||(27994109-27994278)
chr3 (435-577)||(54454207-54454349)
chr3 (89-153)||(27989745-27989810)
chr3 (31-74)||(8601941-8601985)
chr3 (433-492)||(26852235-26852294)
chr3 (432-477)||(27703885-27703930)
[»] chr6 (5 HSPs)
chr6 (261-569)||(30145872-30146182)
chr6 (33-156)||(30146270-30146392)
chr6 (584-661)||(12384375-12384452)
chr6 (122-156)||(6940993-6941027)
chr6 (718-775)||(13312171-13312227)
[»] chr4 (13 HSPs)
chr4 (238-551)||(902589-902903)
chr4 (261-577)||(42457861-42458177)
chr4 (256-390)||(23148599-23148733)
chr4 (577-747)||(11413530-11413698)
chr4 (577-795)||(23149305-23149532)
chr4 (33-156)||(42457647-42457760)
chr4 (578-647)||(42459923-42459992)
chr4 (15-74)||(26938989-26939049)
chr4 (430-481)||(7034178-7034229)
chr4 (122-156)||(3425804-3425838)
chr4 (17-63)||(41362127-41362173)
chr4 (704-747)||(42460069-42460114)
chr4 (583-660)||(898709-898786)
[»] chr5 (9 HSPs)
chr5 (272-577)||(43451892-43452196)
chr5 (264-577)||(17220469-17220782)
chr5 (272-577)||(29598914-29599219)
chr5 (261-577)||(5729351-5729667)
chr5 (430-477)||(25899589-25899636)
chr5 (718-775)||(2294059-2294115)
chr5 (31-74)||(29359897-29359941)
chr5 (31-72)||(30619092-30619134)
chr5 (718-759)||(17222835-17222875)
[»] chr7 (10 HSPs)
chr7 (264-550)||(28245502-28245787)
chr7 (675-723)||(1086174-1086222)
chr7 (430-493)||(26614890-26614953)
chr7 (588-662)||(13120945-13121019)
chr7 (359-497)||(20215227-20215365)
chr7 (433-562)||(28769981-28770110)
chr7 (31-74)||(14966201-14966245)
chr7 (31-74)||(15395673-15395717)
chr7 (583-658)||(14760838-14760913)
chr7 (15-73)||(31187396-31187455)
[»] scaffold0009 (1 HSPs)
scaffold0009 (435-562)||(99476-99603)
[»] chr1 (5 HSPs)
chr1 (15-74)||(35067285-35067345)
chr1 (31-74)||(26114943-26114987)
chr1 (31-74)||(43626783-43626827)
chr1 (31-74)||(50547571-50547615)
chr1 (122-156)||(10887615-10887649)
[»] scaffold0524 (1 HSPs)
scaffold0524 (425-497)||(6130-6202)
[»] scaffold0481 (1 HSPs)
scaffold0481 (689-799)||(9281-9396)


Alignment Details
Target: chr8 (Bit Score: 699; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 227 - 1072
Target Start/End: Complemental strand, 37341305 - 37340456
Alignment:
Q  227 tatctaatgacacacccctgccaccctcccacctctgccacccttaacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcc 326  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37341305 tatctaatgacacacccctgccaccctcccacctcagccacccttaacattatgcctacgacgataaaccttcccaccataaacctctctcaagacttcc 37341206  T
Q  327 tccaaattttgccatgtctcagacccttgcgacaccacaccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactcta 426  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  37341205 tccaaattttgccatgtctcatacccttgcgacaccacaccactggacataacaaaatatacatgatctctgatacaaccctaccttccgccgaactcta 37341106  T
Q  427 agaacccatgctctccatcctcctcagcagcaatctcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcg 526  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37341105 agaacccatgctctccatcctcctcagcaataatctcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcg 37341006  T
Q  527 tggatgagagacgagataaaaccatatgatgtatccctcttccgcctccacgacctaattaacttgcatgcataagaaatcagtactaacattcactttg 626  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  37341005 tggatgagagacaagataaaaccatatgatgtatccctcttccgcccccacgacctaattaacttgcatgcataaggaataagtactaacattcactttg 37340906  T
Q  627 atgtttgttaaagcttaaaatgcggtaattttgagcnnnnnnnnnnctccaagtttggacatatttgtgtggtttggattttgggataagggagagaaag 726  Q
    |||||||||||||||| |||||||||||||||||||          | |||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  37340905 atgtttgttaaagctt-aaatgcggtaattttgagc-aaaaaaaaacaccaaatttggacatatttgtgtggtttgaattttgggataagggagagaaag 37340808  T
Q  727 tgaaaagt--------tgaaactgtaaaatgggaggggtgatttttcttatatatatatcaaagcagttcagattacataaccgtgttgaatcttttagg 818  Q
    ||||||||        | ||||||||||||||||||||||||||| ||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37340807 tgaaaagttaaaactgtaaaactgtaaaatgggaggggtgattttcct--tatatatatcaatgcagttcagattacataaccgtgttgaatcttttagg 37340710  T
Q  819 cacgtaccattagagatagcattgctgattagttatctagataactaatttcaaacaaagaaaagagagagggtggatgtgggggaaatagggtgtaagt 918  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37340709 cacgtaccattagagatagcattgctgattagttatctagataactaatttcaaacaaagaaaagagagagggtggatgtgggggaaatagggtgtaagt 37340610  T
Q  919 agaactagtccaaaagcttttttgttaagtaagtttatccatcaagaccagtccaaactccatagcccaatcaaacactgaaaacagcattaccggacta 1018  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37340609 agaactagtccaaaagcttttttgttaagtaagtttatccatcaagaccagtccaaactccatagcccaatcaaacactgaaaacagcatcaccggacta 37340510  T
Q  1019 gtgtcatgttttcccttcttccctcccgtaggaacaactccgacaaggaggaag 1072  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37340509 gtgtcatgttttcccttcttccctcccgtaggaacaactccgacaaggaggaag 37340456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 37341518 - 37341376
Alignment:
Q  14 cacagaggtagaagcggtctgttttggcgcattttggttgcttccaaacaacatatcatgcattgaccatattcaaaacagaaaatttaattcaaaatag 113  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37341518 cacagaggcagaagcggtctgttttggcgcatttaggttgcttccaaacaacatatcatgcattgaccatattcaaaacagaaaatttaattcaaaatag 37341419  T
Q  114 caattaagaacacaacataattttcaaacataacattaatcaa 156  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  37341418 caattaagaacacatcataattttcaaacataacattaatcaa 37341376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 25200564 - 25200477
Alignment:
Q  66 atatcatgcattgaccatattcaaaacagaaaatttaattcaaaatagcaattaagaacacaacataattttcaaacataacattaat 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  25200564 atatcatgcattgaccatattcaaaacagaaaatttaattcaaaacaacaattaagaacacaacataattttcaaacataacattaat 25200477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 14088827 - 14088956
Alignment:
Q  31 tctgttttggcgcattttggttgcttccaaacaacatatcatgcatt-gaccatattcaa-aacagaaaatttaattcaaaa--tagcaattaagaacac 126  Q
    |||||||||||||||||   ||||||| |||| ||||||||||| || || ||||| |   ||| |||||| ||||||| ||  || ||||||  |||||    
T  14088827 tctgttttggcgcatttatcttgcttctaaacgacatatcatgcctttgatcatatgctccaacggaaaatctaattcataacataacaattatcaacac 14088926  T
Q  127 aacataattttcaaacataacattaatcaa 156  Q
    |||||||||||| |||||||||||||||||    
T  14088927 aacataattttcgaacataacattaatcaa 14088956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 309 - 495
Target Start/End: Original strand, 14089167 - 14089353
Alignment:
Q  309 acctctctcaagacttcctccaaattttgccatgtctcagacccttgcgacaccacaccactggacataacaaaatatacataatctctgatacaaccct 408  Q
    |||||| |||| || |||||||||| |||||||   ||||||||| ||| |||| ||||||||||||| |||    | ||||  |||||||| || | |     
T  14089167 acctctttcaatacctcctccaaatgttgccattcttcagaccctcgcggcaccgcaccactggacatcacagctcacacatgctctctgatgcagctca 14089266  T
Q  409 accttccgccaaactctaagaacccatgctctccatcctcctcagcagcaatctcatcaagggcctcctgctctggtggcctcgaca 495  Q
    |||||||||  |  | || | |||||||||||||||| |||| ||||||||   |||||| | ||||  ||||||||||||||||||    
T  14089267 accttccgctcagttgtatgtacccatgctctccatcgtcctgagcagcaactacatcaatgacctcacgctctggtggcctcgaca 14089353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 5344929 - 5344885
Alignment:
Q  31 tctgttttggcgcattttggttgcttccaaaca-acatatcatgc 74  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  5344929 tctgttttggcgcattttgcttgcttccaaacagacatatcatgc 5344885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 333
Target Start/End: Original strand, 27575639 - 27575711
Alignment:
Q  261 ctgccacccttaacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaat 333  Q
    |||||||||| |||| || |||||||||| |||||   ||| |||| |||||||||||||||||| |||||||    
T  27575639 ctgccaccctcaacaataagcctacgacggtaaactcgtcctccatgaacctctctcaagacttcttccaaat 27575711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 430 - 481
Target Start/End: Original strand, 1346806 - 1346857
Alignment:
Q  430 acccatgctctccatcctcctcagcagcaatctcatcaagggcctcctgctc 481  Q
    |||||| |||||| |||| ||||||| ||| |||||||||||||||||||||    
T  1346806 acccatactctccctcctactcagcaccaacctcatcaagggcctcctgctc 1346857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 1e-96; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 262 - 577
Target Start/End: Complemental strand, 32208991 - 32208677
Alignment:
Q  262 tgccacccttaacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaattttgccatgtctcagacccttgcgacac 361  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| |||| |||||||||||| | |||    
T  32208991 tgccaccttcaacattatgcctacgacgataaacctttccaccataaacctctctcgagacatcctccaaatattgtcatgcctcagacccttgtggcac 32208892  T
Q  362 cacaccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagcagcaatc 461  Q
    |||||||||||||||||||| ||||| ||  ||||||||||  ||| ||||||| || |||||| |||||||||||||||||||||||| | || |||||    
T  32208891 cacaccactggacataacaacatatatatggtctctgatacggcccaaccttccacccaactcttagaacccatgctctccatcctccttaacaacaatc 32208792  T
Q  462 tcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacgagataaaaccatatgatgtatc 561  Q
    ||||||| | ||| ||| |||||||| |||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||| |||||||||    
T  32208791 tcatcaacgacct-ctgatctggtgggctcggcacctgaacctcctggtttggaagaatcatgcgtggaagagagacgagataaaaccatctgatgtatc 32208693  T
Q  562 cctcttccgcctccac 577  Q
    |||||||| |||||||    
T  32208692 cctcttccacctccac 32208677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 256 - 502
Target Start/End: Complemental strand, 12753285 - 12753045
Alignment:
Q  256 cacctctgccacccttaacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaattttgccatgtctcagacccttg 355  Q
    ||||||||||||||| ||||||| |||||      |||||||| || |||| ||||||||||||||||||||| |||   || |||| |||||||| |||    
T  12753285 cacctctgccaccctcaacattacgccta------taaaccttccctccatgaacctctctcaagacttcctcaaaacaatgacatgcctcagacctttg 12753192  T
Q  356 cgacaccacaccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagca 455  Q
    || ||||||||||||||||||||||| ||||||||  ||||| ||||  | | ||||||| || |  || |||||| ||| |||||||||||||||| ||    
T  12753191 cggcaccacaccactggacataacaacatatacatggtctctaatacggctcaaccttcctcccagatccaagaacacatactctccatcctcctcatca 12753092  T
Q  456 gcaatctcatcaagggcctcctgctctggtggcctcgacacctgaac 502  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||    
T  12753091 gcaatctcatcaagggcctcctgctctggtggtctcggaacctgaac 12753045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 362 - 577
Target Start/End: Original strand, 32463057 - 32463272
Alignment:
Q  362 cacaccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagcagcaatc 461  Q
    ||||||||||||||| |||  ||| ||||  ||||||||||  ||| |||||||| | |  || ||| |||| |||| || ||||||||||| |||||||    
T  32463057 cacaccactggacatcacaccatagacatggtctctgatacggcccaaccttccggccagatccaagtacccctgctttctatcctcctcagaagcaatc 32463156  T
Q  462 tcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacgagataaaaccatatgatgtatc 561  Q
    |||| ||||||||||| ||||||||||||||  |  ||||| || ||||||||||||| |||| ||||||||||||||||||||| |||| | ||||||     
T  32463157 tcataaagggcctcctactctggtggcctcgggatttgaacatcctggtttggaagaatcatgtgtggatgagagacgagataaagccatctaatgtatt 32463256  T
Q  562 cctcttccgcctccac 577  Q
    |  | |||||||||||    
T  32463257 ctgcctccgcctccac 32463272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 350 - 561
Target Start/End: Complemental strand, 15344168 - 15343957
Alignment:
Q  350 cccttgcgacaccacaccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcc 449  Q
    ||||| || |||||||||||||||||| |||| ||| |||| |||||| |||| |||| ||||||| || |  || ||| |||  | ||||||||||| |    
T  15344168 cccttacggcaccacaccactggacatgacaacatagacatgatctcttatacgacccaaccttccacccagatccaagtacctttactctccatcctgc 15344069  T
Q  450 tcagcagcaatctcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacgagataaaacc 549  Q
    ||| || ||||||||||||||||||| |||||| ||||||||   ||||| || || | || |||||||| ||||||| |||| |||| | |||||||||    
T  15344068 tcatcaacaatctcatcaagggcctcttgctctagtggcctctggacctgtacatcctcgtctggaagaatcatgcgtcgatgtgagatgggataaaacc 15343969  T
Q  550 atatgatgtatc 561  Q
    || |||| ||||    
T  15343968 atctgatatatc 15343957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 12753464 - 12753396
Alignment:
Q  89 aaacagaaaatttaattcaaaatagcaattaagaacacaacataattttc-aaacataacattaatcaa 156  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||| |||||||||    
T  12753464 aaacagaaaatttaattcaaaacagcaattaacaacacaatataattttcaaaacataaaattaatcaa 12753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 347 - 470
Target Start/End: Complemental strand, 25966767 - 25966644
Alignment:
Q  347 agacccttgcgacaccacaccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcc 446  Q
    |||||||||||  | ||||||||||||||| |||| ||| ||||  ||||||||||  | | ||||| ||   || || ||| |||| || |||||||||    
T  25966767 agacccttgcgcaatcacaccactggacatcacaacatacacatggtctctgatacggctcaacctttcgaacaaatccaagtacccctgatctccatcc 25966668  T
Q  447 tcctcagcagcaatctcatcaagg 470  Q
    ||||||||||||||||||||||||    
T  25966667 tcctcagcagcaatctcatcaagg 25966644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 3406910 - 3406954
Alignment:
Q  31 tctgttttggcgcattttggttgcttccaaaca-acatatcatgc 74  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  3406910 tctgttttggcgcattttgcttgcttccaaacagacatatcatgc 3406954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 673 - 723
Target Start/End: Original strand, 32468175 - 32468225
Alignment:
Q  673 ctccaagtttggacatatttgtgtggtttggattttgggataagggagaga 723  Q
    |||||||||||| || |||||||||||| |||||||||||| || ||||||    
T  32468175 ctccaagtttggtcaaatttgtgtggttcggattttgggatgagagagaga 32468225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 2e-83; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 272 - 577
Target Start/End: Original strand, 27990409 - 27990714
Alignment:
Q  272 aacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaattttgccatgtctcagacccttgcgacaccacaccactg 371  Q
    ||||||| |||||| |||||||||||||||  ||||||||||||||||||||||||||||||    |||   |||||||| ||  | ||||||||||| |    
T  27990409 aacattacgcctacaacgataaacctttcctgcataaacctctctcaagacttcctccaaatgacaccaatcctcagacctttctggcaccacaccacag 27990508  T
Q  372 gacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagcagcaatctcatcaaggg 471  Q
    ||||||||   ||||||||  ||||||||||||||| || || |||| | ||| ||||||||||||||||||||||||||| || |||||||||||||||    
T  27990509 gacataactgcatatacatggtctctgatacaacccaacatttcgcctagctccaagaacccatgctctccatcctcctcaacaacaatctcatcaaggg 27990608  T
Q  472 cctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacgagataaaaccatatgatgtatccctcttccgc 571  Q
    ||||| |||||||||| |||| |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  27990609 cctcccgctctggtggtctcggcacccgaacctcctggtttggaagaatcatgcgtggatgagagacgagataaaaccatctgatgtatccctcttccac 27990708  T
Q  572 ctccac 577  Q
    ||||||    
T  27990709 ctccac 27990714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 581 - 747
Target Start/End: Original strand, 27994109 - 27994278
Alignment:
Q  581 ctaattaacttgcatgcataagaaatcagtactaacattcactttgatgtttgttaaagcttaaaatgcggtaattttgagc-nnnnnnnnnnctccaag 679  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||  |||| | | |||||||||           |  |||     
T  27994109 ctaattaacttgcatgcataaggaatcaatactaaccttcactttgatgtttgttaaatcttcgaatgtgatgattttgagcaaaaaaaaaaacaacaac 27994208  T
Q  680 tttggacatatttgtgtggtttggattttgggataagg--gagagaaagtgaaaagttgaaactgtaaaa 747  Q
    |||||||| |||||||||||||||||||||||||||||  |||||||||||||||  ||||| |||||||    
T  27994209 tttggacaaatttgtgtggtttggattttgggataagggagagagaaagtgaaaatgtgaaaatgtaaaa 27994278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 435 - 577
Target Start/End: Original strand, 54454207 - 54454349
Alignment:
Q  435 tgctctccatcctcctcagcagcaatctcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgag 534  Q
    |||||||| ||||||||| || ||||||||||||||||||||| || || ||||||||  |  ||||| || ||||||||||||| | |||  |||||||    
T  54454207 tgctctccgtcctcctcaacaacaatctcatcaagggcctcctactttgatggcctcgggatatgaacatcctggtttggaagaatcttgcacggatgag 54454306  T
Q  535 agacgagataaaaccatatgatgtatccctcttccgcctccac 577  Q
    ||| ||||||||||||| ||| ||| || |  |||||||||||    
T  54454307 agatgagataaaaccatctgaagtagccattgtccgcctccac 54454349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 27989745 - 27989810
Alignment:
Q  89 aaacagaaaatttaattcaaaatagcaattaagaacacaacataattttc-aaacataacattaat 153  Q
    ||||| ||||||||||| |||| | ||||||| ||||||| ||||||||| |||||||||||||||    
T  27989745 aaacaaaaaatttaatttaaaacaacaattaacaacacaaaataattttcaaaacataacattaat 27989810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 8601941 - 8601985
Alignment:
Q  31 tctgttttggcgcattttggttgcttccaaaca-acatatcatgc 74  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  8601941 tctgttttggcgcattttgcttgcttccaaacagacatatcatgc 8601985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 433 - 492
Target Start/End: Original strand, 26852235 - 26852294
Alignment:
Q  433 catgctctccatcctcctcagcagcaatctcatcaagggcctcctgctctggtggcctcg 492  Q
    |||||||||| ||||  |||||| ||||||||||||||||||||| ||| | ||||||||    
T  26852235 catgctctccctcctgttcagcaacaatctcatcaagggcctccttctcagttggcctcg 26852294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 432 - 477
Target Start/End: Original strand, 27703885 - 27703930
Alignment:
Q  432 ccatgctctccatcctcctcagcagcaatctcatcaagggcctcct 477  Q
    ||||| ||||| |||| ||||||| |||||||||||||||||||||    
T  27703885 ccatggtctccctcctgctcagcaacaatctcatcaagggcctcct 27703930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 6e-80; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 261 - 569
Target Start/End: Complemental strand, 30146182 - 30145872
Alignment:
Q  261 ctgccacccttaacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaattttgccatgtctcagacccttgcgaca 360  Q
    |||||||||  || |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||  |||||||||||   ||    
T  30146182 ctgccacccacaatattatgcctacggcgataaaccttgccaccataaacctctctcaagacttcctccaaatgttgccatgcttcagacccttggagca 30146083  T
Q  361 ccacac--cactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagcagca 458  Q
    ||||||  |||| ||||| |||  | ||||||  ||| ||||||  ||| |||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  30146082 ccacacaccactagacattacatcacatacatggtctttgatacggcccaaccttccgcctagctctaagaacacatgctctccatcctcctcagcagca 30145983  T
Q  459 atctcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacgagataaaaccatatgatgt 558  Q
    ||||||||||||||||||||||||||||||||||| |||  |||||  ||||||||||||| |||||||||||||||||     ||||||||| ||||||    
T  30145982 atctcatcaagggcctcctgctctggtggcctcgaaaccataaccttatggtttggaagaatcatgcgtggatgagagattgtgtaaaaccatttgatgt 30145883  T
Q  559 atccctcttcc 569  Q
    |||||||||||    
T  30145882 atccctcttcc 30145872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 30146392 - 30146270
Alignment:
Q  33 tgttttggcgcattttggttgcttccaaacaacatatcatgcattgaccatattcaaaacagaaaatttaattcaaaatagcaattaagaacacaacata 132  Q
    |||||||||| |||| ||||||||  |||| ||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| | |||| | ||||    
T  30146392 tgttttggcgtatttaggttgcttttaaacgacataccatgcattgaccatattcaaaacataaaatttaattcaaaataacaatt-acaacagagcata 30146294  T
Q  133 attttcaaacataacattaatcaa 156  Q
    ||||||||||||||||||||||||    
T  30146293 attttcaaacataacattaatcaa 30146270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 584 - 661
Target Start/End: Complemental strand, 12384452 - 12384375
Alignment:
Q  584 attaacttgcatgcataagaaatcagtactaacattcactttgatgtttgttaaagcttaaaatgcggtaattttgag 661  Q
    ||||||||||||||||||| |||  | | |||| |||| ||||||||||| |||||||| ||||||||| ||||||||    
T  12384452 attaacttgcatgcataaggaattcgaagtaactttcaatttgatgtttgataaagcttcaaatgcggtgattttgag 12384375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 6941027 - 6940993
Alignment:
Q  122 aacacaacataattttcaaacataacattaatcaa 156  Q
    |||||||||||||||||||||||||||||||||||    
T  6941027 aacacaacataattttcaaacataacattaatcaa 6940993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 718 - 775
Target Start/End: Original strand, 13312171 - 13312227
Alignment:
Q  718 gagagaaagtgaaaagttgaaactgtaaaatgggaggggtgatttttcttatatatat 775  Q
    |||||| |||||||||| ||||||||||||||||||||| ||  || |||||||||||    
T  13312171 gagagagagtgaaaagt-gaaactgtaaaatgggaggggcgaacttccttatatatat 13312227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 9e-70; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 9e-70
Query Start/End: Original strand, 238 - 551
Target Start/End: Complemental strand, 902903 - 902589
Alignment:
Q  238 acacccctgccaccc-tcccacctctgccacccttaacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaatttt 336  Q
    ||||||||||||||| |  ||||  ||||||||  ||||||| ||||||| ||||||||||| |||||||  ||||| ||||||| |||||||||||  |    
T  902903 acacccctgccacccctagcacccttgccacccccaacattaagcctacgtcgataaaccttcccaccatgcacctccctcaagatttcctccaaatgat 902804  T
Q  337 gccatgtctcagacccttgcgacaccacaccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatg 436  Q
     ||||| || ||||||||||  |||| ||||||||| |||||||| ||| |||| |||||| |||| |||| |||||||||| |||||| ||||||||||    
T  902803 tccatgccttagacccttgctgcacctcaccactggtcataacaacatacacatgatctcttatacgacccaaccttccgcctaactcttagaacccatg 902704  T
Q  437 ctctccatcctcctcagcagcaatctcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagag 536  Q
    |||||||||||||| ||||| ||||||||||| | ||||| |||||||||||||||||||| ||||||| || |||||||||| |||| |||||||| ||    
T  902703 ctctccatcctcctgagcagaaatctcatcaatgacctcccgctctggtggcctcgacaccggaacctcatgatttggaagaatcatgtgtggatgaaag 902604  T
Q  537 acgagataaaaccat 551  Q
    |||  ||||||||||    
T  902603 acgtcataaaaccat 902589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 261 - 577
Target Start/End: Original strand, 42457861 - 42458177
Alignment:
Q  261 ctgccacccttaacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaattttgccatgtctcagacccttgcgaca 360  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  42457861 ctgccaccctaaacattattcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaatgtttccatgcctcagacccttgcgaca 42457960  T
Q  361 ccacaccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagcagcaat 460  Q
    |||||| |||| |||| |||| ||| |||   | ||||||||    | || ||      | |||  || |||| || |||||||||||||||| |||||     
T  42457961 ccacactactgtacatcacaacatacacacggtttctgatacgggtcaacgttttagacagctccgagtacccctgatctccatcctcctcagtagcaac 42458060  T
Q  461 ctcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacgagataaaaccatatgatgtat 560  Q
    ||||||||||| || ||||||| ||||||||||||||||||| || |    |||||||| |||||| |||||||||||| ||||||||||| |||||| |    
T  42458061 ctcatcaagggtctgctgctctagtggcctcgacacctgaacatcctccagtggaagaatcatgcgcggatgagagacgcgataaaaccatctgatgtgt 42458160  T
Q  561 ccctcttccgcctccac 577  Q
    |||||||||||||||||    
T  42458161 ccctcttccgcctccac 42458177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 256 - 390
Target Start/End: Original strand, 23148599 - 23148733
Alignment:
Q  256 cacctctgccacccttaacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaattttgccatgtctcagacccttg 355  Q
    |||| |||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||| ||| |||  |||| |||||||    
T  23148599 cacccctgccaccctgaacattatgcctacggcgataaaccttcccaccataaacctttctcgagacttcctccaaatgttgtcattcctcatacccttg 23148698  T
Q  356 cgacaccacaccactggacataacaaaatatacat 390  Q
    || ||||||||||||| |||| |||| ||| ||||    
T  23148699 cggcaccacaccactgaacatcacaacatacacat 23148733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 577 - 747
Target Start/End: Complemental strand, 11413698 - 11413530
Alignment:
Q  577 cgacctaattaacttgcatgcataagaaatcagtactaacattcactttgatgtttgttaaagcttaaaatgcggtaattttgagcnnnnnnnnnnctcc 676  Q
    |||||||||||||||||||||||||  | ||| ||||||| ||||||||||||||||||||||||| ||||||||| |||||||||                  
T  11413698 cgacctaattaacttgcatgcataacgagtcactactaaccttcactttgatgtttgttaaagcttcaaatgcggtgattttgagcaaaaaaaaactctt 11413599  T
Q  677 aagtttggacatatttgtgtggtttggattttgggataagggagagaaagtgaaaagttgaaactgtaaaa 747  Q
    ||||||||||| |||| ||||||| ||||||||||||  | |||||| |||||||| ||||||||||||||    
T  11413598 aagtttggacagatttttgtggttcggattttgggat--gagagagagagtgaaaatttgaaactgtaaaa 11413530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 577 - 795
Target Start/End: Original strand, 23149305 - 23149532
Alignment:
Q  577 cgacctaattaacttgcatgcataagaaatcagtactaacattcactttgatgtttgttaaagcttaaaatgcggtaattttgag-cnnnnnnnnnnctc 675  Q
    ||||| ||| |||||||||||||||| |||  | ||||||||||| ||||||||||||||||| || ||||||||| ||||||||            ||     
T  23149305 cgaccaaatcaacttgcatgcataaggaattcgaactaacattcaatttgatgtttgttaaagtttcaaatgcggtgattttgagagagaaaaaaaactt 23149404  T
Q  676 caagtttggacatatttgtgtggtttggattttgggataagg--gagagaaagtgaaaagttgaaactg--------taaaatgggaggggtgatttttc 765  Q
    |||||||||||| ||| |||   ||  |||||||||||||||  |||||||||||||||||||||||||        |||||||||||||||||||||||    
T  23149405 caagtttggacagattcgtgcaattcagattttgggataagggagagagaaagtgaaaagttgaaactgtaaaactttaaaatgggaggggtgatttttc 23149504  T
Q  766 ttatatatatatcaaagcagttcagattac 795  Q
    |  |||||||||||||||||||| ||||||    
T  23149505 t--tatatatatcaaagcagttcggattac 23149532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 42457647 - 42457760
Alignment:
Q  33 tgttttggcgcattttggttgcttccaaacaacatatcatgcattgaccatattcaaaacagaaaatttaattcaaaatagcaattaagaacacaacata 132  Q
    ||||||||||||||| ||||||||| |||| ||||| |||||||||||||||| ||||||| ||||||||||||||          ||||||||||||||    
T  42457647 tgttttggcgcatttaggttgcttctaaacgacataccatgcattgaccatatgcaaaacataaaatttaattcaa----------aagaacacaacata 42457736  T
Q  133 attttcaaacataacattaatcaa 156  Q
    |||||||| |||||||||||||||    
T  42457737 attttcaagcataacattaatcaa 42457760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 578 - 647
Target Start/End: Original strand, 42459923 - 42459992
Alignment:
Q  578 gacctaattaacttgcatgcataagaaatcagtactaacattcactttgatgtttgttaaagcttaaaat 647  Q
    ||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||    
T  42459923 gacctaattaacttgcatgcataaggaatcagtactaaccttcaatttgatgtttgttaaagcttcaaat 42459992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 26939049 - 26938989
Alignment:
Q  15 acagaggtagaagcggtctgttttggcgcattttggttgcttccaaaca-acatatcatgc 74  Q
    ||||||| ||||||  || |||||||||||||||| ||||||||||||| |||||||||||    
T  26939049 acagaggcagaagccatcagttttggcgcattttgcttgcttccaaacagacatatcatgc 26938989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 430 - 481
Target Start/End: Complemental strand, 7034229 - 7034178
Alignment:
Q  430 acccatgctctccatcctcctcagcagcaatctcatcaagggcctcctgctc 481  Q
    ||||| ||||||| |||| ||||||| ||| |||||||||||||||||||||    
T  7034229 acccacgctctccctcctgctcagcaacaacctcatcaagggcctcctgctc 7034178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 3425804 - 3425838
Alignment:
Q  122 aacacaacataattttcaaacataacattaatcaa 156  Q
    |||||||||||||||| ||||||||||||||||||    
T  3425804 aacacaacataattttaaaacataacattaatcaa 3425838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 41362173 - 41362127
Alignment:
Q  17 agaggtagaagcggtctgttttggcgcattttggttgcttccaaaca 63  Q
    ||||| ||||||  ||||||||||||||||||| |||||||||||||    
T  41362173 agaggcagaagccatctgttttggcgcattttgcttgcttccaaaca 41362127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 704 - 747
Target Start/End: Original strand, 42460069 - 42460114
Alignment:
Q  704 attttgggataaggg--agagaaagtgaaaagttgaaactgtaaaa 747  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||    
T  42460069 attttgggaaaagggtgagagaaagtgaaaagttgaaactgtaaaa 42460114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 583 - 660
Target Start/End: Complemental strand, 898786 - 898709
Alignment:
Q  583 aattaacttgcatgcataagaaatcagtactaacattcactttgatgtttgttaaagcttaaaatgcggtaattttga 660  Q
    ||||||||||||||  |||| |||  | |||||| |||| ||||| ||||| |||||||| ||||||||| |||||||    
T  898786 aattaacttgcatgtgtaaggaattcgaactaaccttcaatttgacgtttgataaagcttcaaatgcggtgattttga 898709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 2e-64; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 272 - 577
Target Start/End: Original strand, 43451892 - 43452196
Alignment:
Q  272 aacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaattttgccatgtctcagacccttgcgacaccacaccactg 371  Q
    |||||| ||||||||||| ||||||||  |||| |||| |||||| || ||||||||||||| ||| | || | |||||||||||  |||| ||||||||    
T  43451892 aacattttgcctacgacggtaaaccttctcaccgtaaatctctctaaatacttcctccaaatgttgtcgtgccacagacccttgctgcacctcaccactg 43451991  T
Q  372 gacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagcagcaatctcatcaaggg 471  Q
    |||||||||| ||| ||||  ||||||||||  ||| ||||||| || | ||||||| ||||||||| | ||||||||||| ||||||||||||||| ||    
T  43451992 gacataacaacatacacatggtctctgatacggcccaaccttccccccagctctaagtacccatgcttttcatcctcctcaacagcaatctcatcaatgg 43452091  T
Q  472 cctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacgagataaaaccatatgatgtatccctcttccgc 571  Q
    ||||| ||||||||||||||  |||| |||||| |  ||||||||||| ||||||||||||||||||  ||||||||||| | |||||||||||||| ||    
T  43452092 cctcccgctctggtggcctcagcaccggaacct-tctgtttggaagaatcatgcgtggatgagagacttgataaaaccatttaatgtatccctcttctgc 43452190  T
Q  572 ctccac 577  Q
    ||||||    
T  43452191 ctccac 43452196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 264 - 577
Target Start/End: Original strand, 17220469 - 17220782
Alignment:
Q  264 ccacccttaacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaattttgccatgtctcagacccttgcgacacca 363  Q
    ||||||| |||||  ||||||||||| |||||||| |||||||  ||||||||||| ||||||||||||| |||  ||| ||||||||||| |  ||||     
T  17220469 ccaccctcaacatgttgcctacgacggtaaaccttcccaccatgcacctctctcaatacttcctccaaatgttgtaatgcctcagacccttcctgcacct 17220568  T
Q  364 caccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagcagcaatctc 463  Q
    |||||||||||||||||| ||| | ||  ||||||||||  ||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  17220569 caccactggacataacaacatacatatggtctctgatacggcccaaccttccgcccaactctaagaacccatgctctccatcctcctgagcagcaatctc 17220668  T
Q  464 atcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacgagataaaaccatatgatgtatccc 563  Q
    ||||| |  ||| |||||||||||| ||| |||| |||  ||   || | |||||| ||||||||||||| |||||  ||||||||||  |||||||| |    
T  17220669 atcaatgatctcttgctctggtggcttcggcaccggaagttcaatgtctagaagaatcatgcgtggatgaaagacgtcataaaaccattggatgtatctc 17220768  T
Q  564 tcttccgcctccac 577  Q
    ||| | ||||||||    
T  17220769 tctgctgcctccac 17220782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 272 - 577
Target Start/End: Complemental strand, 29599219 - 29598914
Alignment:
Q  272 aacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaattttgccatgtctcagacccttgcgacaccacaccactg 371  Q
    ||||||| ||||||||||| ||||||| || ||   || ||||||||| ||||||| ||||| ||| |||  |||| || |||||| ||||||| |||||    
T  29599219 aacattacgcctacgacgacaaaccttccctccgcgaatctctctcaatacttccttcaaatgttgtcattcctcatactcttgcggcaccacatcactg 29599120  T
Q  372 gacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagcagcaatctcatcaaggg 471  Q
     | ||||||| ||||||||  |||||||||| |  | ||||||| || |  || ||||||  ||||||||||||||||||||||||| ||||||||||||    
T  29599119 catataacaacatatacatggtctctgatacgattcaaccttcctcccagatccaagaacatatgctctccatcctcctcagcagcagtctcatcaaggg 29599020  T
Q  472 cctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacgagataaaaccatatgatgtatccctcttccgc 571  Q
    ||||||||||| |||| ||||  || ||||| || ||   |||||||| ||| |||||||| |||  |  |||| | ||| |||||||||||||||||||    
T  29599019 cctcctgctcttgtggtctcgggacatgaacatcctgcactggaagaatcatacgtggatgtgaggtgttataatatcatctgatgtatccctcttccgc 29598920  T
Q  572 ctccac 577  Q
    ||||||    
T  29598919 ctccac 29598914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 577
Target Start/End: Complemental strand, 5729667 - 5729351
Alignment:
Q  261 ctgccacccttaacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaattttgccatgtctcagacccttgcgaca 360  Q
    |||| ||||| ||||| | ||||||||||||||||| | || ||||  ||||||| ||||| | | ||||| |   |||||  |||||||||||||  ||    
T  5729667 ctgctaccctgaacatcacgcctacgacgataaaccctccctccatggacctctcccaagattccttccaattgaagccattactcagacccttgctcca 5729568  T
Q  361 ccacaccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagcagcaat 460  Q
    | |||||||||  ||| |||| ||| ||||  ||||| ||||  ||| |||||  | | |  || | | |||| ||||||||||||| | || || ||||    
T  5729567 cgacaccactgaccatgacaacatagacatggtctctaatacggcccaaccttttggccagatcaatgtacccctgctctccatcctgcacaacaacaat 5729468  T
Q  461 ctcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacgagataaaaccatatgatgtat 560  Q
    ||| |||||||| ||||||||||||||| | |  |||||||| || | ||   |||||| |||| ||||||| |||| ||||||||| ||  |||| |||    
T  5729467 ctcttcaagggcatcctgctctggtggctttgggacctgaacatcctcgtcctgaagaatcatgtgtggatgtgagaagagataaaatcagctgatttat 5729368  T
Q  561 ccctcttccgcctccac 577  Q
    ||||  | |||||||||    
T  5729367 ccctgcttcgcctccac 5729351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 430 - 477
Target Start/End: Complemental strand, 25899636 - 25899589
Alignment:
Q  430 acccatgctctccatcctcctcagcagcaatctcatcaagggcctcct 477  Q
    ||||||||||||| | || |||||||||||||||||||||||||||||    
T  25899636 acccatgctctcccttctgctcagcagcaatctcatcaagggcctcct 25899589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 718 - 775
Target Start/End: Complemental strand, 2294115 - 2294059
Alignment:
Q  718 gagagaaagtgaaaagttgaaactgtaaaatgggaggggtgatttttcttatatatat 775  Q
    ||||||||||||||||| |||||| |||||||||||||||||  |||||| |||||||    
T  2294115 gagagaaagtgaaaagt-gaaactataaaatgggaggggtgaactttcttttatatat 2294059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 29359897 - 29359941
Alignment:
Q  31 tctgttttggcgcattttggttgcttccaaaca-acatatcatgc 74  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  29359897 tctgttttggcgcattttgcttgcttccaaacagacatatcatgc 29359941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 30619134 - 30619092
Alignment:
Q  31 tctgttttggcgcattttggttgcttccaaaca-acatatcat 72  Q
    ||||||||||||||||||| ||||||||||||| |||||||||    
T  30619134 tctgttttggcgcattttgcttgcttccaaacagacatatcat 30619092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 718 - 759
Target Start/End: Original strand, 17222835 - 17222875
Alignment:
Q  718 gagagaaagtgaaaagttgaaactgtaaaatgggaggggtga 759  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  17222835 gagagagagtgaaaagt-gaaactgtaaaatgggaggggtga 17222875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 9e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 264 - 550
Target Start/End: Complemental strand, 28245787 - 28245502
Alignment:
Q  264 ccacccttaacattatgcctacgacgataaacctttccaccataaacctctctcaagacttcctccaaattttgccatgtctcagacccttgcgacacca 363  Q
    ||||||| ||||||| ||||||| ||||||||||| |||| ||  |||||||| |||| |||||||||||  | ||||| ||||||||||||   ||||     
T  28245787 ccaccctcaacattaagcctacggcgataaaccttcccactatgcacctctcttaagatttcctccaaatgattccatgcctcagacccttgttgcacct 28245688  T
Q  364 caccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagcagcaatctc 463  Q
    ||||||| | |||||||  ||| ||||  |||||||||| |||  |||||||||| |  ||||||||  |||||||| |||| || | ||||||||||||    
T  28245687 caccactagtcataacagcatacacatggtctctgatacgacca-accttccgcccagttctaagaattcatgctcttcatcatcttgagcagcaatctc 28245589  T
Q  464 atcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagacgagataaaacca 550  Q
    ||||| | ||||| ||||||||||||||| ||||  |||||| | |||| |||||| |||| |||||||||||| |  |||||||||    
T  28245588 atcaatgacctcccgctctggtggcctcggcaccgaaacctcatagtttagaagaatcatgtgtggatgagagatgtcataaaacca 28245502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 675 - 723
Target Start/End: Original strand, 1086174 - 1086222
Alignment:
Q  675 ccaagtttggacatatttgtgtggtttggattttgggataagggagaga 723  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  1086174 ccaagtttggacaaatttgtgtggttcggattttgggataagggagaga 1086222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 430 - 493
Target Start/End: Original strand, 26614890 - 26614953
Alignment:
Q  430 acccatgctctccatcctcctcagcagcaatctcatcaagggcctcctgctctggtggcctcga 493  Q
    |||| ||||||||||||| ||||||| ||| ||||||||||| ||| |||||| ||||||||||    
T  26614890 acccctgctctccatcctactcagcaacaacctcatcaagggtctcttgctctagtggcctcga 26614953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 588 - 662
Target Start/End: Complemental strand, 13121019 - 13120945
Alignment:
Q  588 acttgcatgcataagaaatcagtactaacattcactttgatgtttgttaaagcttaaaatgcggtaattttgagc 662  Q
    ||||||||||||||| |||  | |||||| |||| ||||||||||| |||||||| |||||| || |||||||||    
T  13121019 acttgcatgcataaggaatttgaactaaccttcaatttgatgtttgataaagcttcaaatgcagtgattttgagc 13120945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 359 - 497
Target Start/End: Original strand, 20215227 - 20215365
Alignment:
Q  359 caccacaccactggacataacaaaatatacataatctctgatacaaccctaccttccgccaaactctaagaacccatgctctccatcctcctcagcagca 458  Q
    |||||||| ||||||||| |||  ||| ||||  ||| |||| || ||| ||||| |||  | ||||||| ||||||| ||||||||||||| |  ||||    
T  20215227 caccacacaactggacatcacaccatacacatggtctatgatgcagcccaaccttacgctcagctctaagtacccatggtctccatcctcctaacaagca 20215326  T
Q  459 atctcatcaagggcctcctgctctggtggcctcgacacc 497  Q
    |||||||| | | ||||  ||||||||||||||| ||||    
T  20215327 atctcatccatgacctcacgctctggtggcctcggcacc 20215365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 433 - 562
Target Start/End: Complemental strand, 28770110 - 28769981
Alignment:
Q  433 catgctctccatcctcctcagcagcaatctcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatg 532  Q
    |||||| ||| |||| ||||||||| |||||||||||||| |||| ||| ||||||||||  || |||||  | | |||| |||| |  |||||||||||    
T  28770110 catgctttccctcctgctcagcagcgatctcatcaagggcatccttctcgggtggcctcgggacatgaacaacctcgtttagaagtatgatgcgtggatg 28770011  T
Q  533 agagacgagataaaaccatatgatgtatcc 562  Q
     |||| |  ||||||||||  |||||||||    
T  28770010 tgagatggaataaaaccatcagatgtatcc 28769981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 14966245 - 14966201
Alignment:
Q  31 tctgttttggcgcattttggttgcttccaaaca-acatatcatgc 74  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  14966245 tctgttttggcgcattttgcttgcttccaaacagacatatcatgc 14966201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 15395717 - 15395673
Alignment:
Q  31 tctgttttggcgcattttggttgcttccaaaca-acatatcatgc 74  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  15395717 tctgttttggcgcattttgcttgcttccaaacagacatatcatgc 15395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 14760913 - 14760838
Alignment:
Q  583 aattaacttgcatgcataagaaatcagtactaacattcactttgatgtttgttaaagcttaaaatgcggtaatttt 658  Q
    |||||||||||||||||||| | |  | |||||| |||| ||||||||||| ||| |||| ||||||||| |||||    
T  14760913 aattaacttgcatgcataaggatttcgaactaactttcaatttgatgtttgataaggcttgaaatgcggtgatttt 14760838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 31187396 - 31187455
Alignment:
Q  15 acagaggtagaagcggtctgttttggcgcattttggttgcttccaaaca-acatatcatg 73  Q
    ||||||| ||||||  ||||||||||||||||||| |||||| |||||| ||||||||||    
T  31187396 acagaggcagaagccatctgttttggcgcattttgcttgctttcaaacagacatatcatg 31187455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 435 - 562
Target Start/End: Complemental strand, 99603 - 99476
Alignment:
Q  435 tgctctccatcctcctcagcagcaatctcatcaagggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgag 534  Q
    ||||||||||| | |||| || |||||||||||||||| |  |||||||  | ||| |  |||||||| || | || |||||||| |||||||||||| |    
T  99603 tgctctccatcttgctcaacaacaatctcatcaagggcattatgctctgacgaccttgggacctgaacatcctcgtctggaagaatcatgcgtggatgtg 99504  T
Q  535 agacgagataaaaccatatgatgtatcc 562  Q
    ||| || |||||||||| ||||||||||    
T  99503 agatgatataaaaccatctgatgtatcc 99476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 35067345 - 35067285
Alignment:
Q  15 acagaggtagaagcggtctgttttggcgcattttggttgcttccaaaca-acatatcatgc 74  Q
    ||||||| ||||||  ||||||||||||||||||| ||||||||||||| |||||||||||    
T  35067345 acagaggcagaagccatctgttttggcgcattttgcttgcttccaaacagacatatcatgc 35067285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 26114943 - 26114987
Alignment:
Q  31 tctgttttggcgcattttggttgcttccaaaca-acatatcatgc 74  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  26114943 tctgttttggcgcattttgcttgcttccaaacagacatatcatgc 26114987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 43626783 - 43626827
Alignment:
Q  31 tctgttttggcgcattttggttgcttccaaaca-acatatcatgc 74  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  43626783 tctgttttggcgcattttgcttgcttccaaacagacatatcatgc 43626827  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 50547615 - 50547571
Alignment:
Q  31 tctgttttggcgcattttggttgcttccaaaca-acatatcatgc 74  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  50547615 tctgttttggcgcattttgcttgcttccaaacagacatatcatgc 50547571  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 10887649 - 10887615
Alignment:
Q  122 aacacaacataattttcaaacataacattaatcaa 156  Q
    |||||||||||||||||||||| ||||||||||||    
T  10887649 aacacaacataattttcaaacaaaacattaatcaa 10887615  T

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Target: scaffold0524 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 425 - 497
Target Start/End: Original strand, 6130 - 6202
Alignment:
Q  425 taagaacccatgctctccatcctcctcagcagcaatctcatcaagggcctcctgctctggtggcctcgacacc 497  Q
    |||| ||||||||||||||||||||||| |||||  | |||||| | ||||  ||||||||||||||| ||||    
T  6130 taagtacccatgctctccatcctcctcaacagcacgcgcatcaatgacctcacgctctggtggcctcggcacc 6202  T

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Target: scaffold0481 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 689 - 799
Target Start/End: Complemental strand, 9396 - 9281
Alignment:
Q  689 atttgtgtggtttggattttgggataagggagaga----aagtgaaaagttgaaactgtaaaatgg---gaggggtgatttttcttatatatatatcaaa 781  Q
    |||| ||| ||| ||||||||||||||||||||||    |||||||||  | |||||| |||||||   |||||||| ||||||||||||  ||||||||    
T  9396 atttatgttgttcggattttgggataagggagagatagaaagtgaaaatgtaaaactgaaaaatggtgggaggggtgttttttcttatat--atatcaaa 9299  T
Q  782 gcagttcagattacataa 799  Q
     | |||||||||| ||||    
T  9298 acggttcagattatataa 9281  T

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