View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_low_12 (Length: 479)
Name: NF18211_low_12
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Complemental strand, 42838590 - 42838130
Alignment:
| Q |
7 |
ggagcacagacaagagaaactatatgacgcatgaaagaagaatctctccgaaattagctatagagatcaagatctcacatggacataatgtactctgatt |
106 |
Q |
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| T |
42838590 |
ggagcacaaacaagagaaactatatgacgcatgaaagaagaatctctccgaaattagctatagagatcaagatctcacatggacataatgtactctgatt |
42838491 |
T |
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| Q |
107 |
atcgtcataggtgtagtgcttaatttcaataaggcatttccatttgtttttctgatgtctggaaatcttgaagagccgtttgcagcatatacaactttct |
206 |
Q |
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| T |
42838490 |
atcgtcataggtgtagtgcttaatttcaataaggcatttccatttgtttttctgatgtctggaaatcttgaagagccgtttgcagcatatacaactttct |
42838391 |
T |
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| Q |
207 |
aacagacaaatttcctcagactctgataaacttggagaacaaattaatnnnnnnnntgtaagttcattcaaacataacataaaccatctctagaaattaa |
306 |
Q |
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| T |
42838390 |
aacagacaaatttcctcagactctgataaacttggagaacaaattaataaaaaaaatgtaagttcattcaaacataacataaaccatctctagaaattaa |
42838291 |
T |
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| Q |
307 |
atgaagcatatttcagtaaattgcacaaaattcgacttgagtttgttgagttagcattttttattcaacc----ataaatcctctaaagatatgacaacc |
402 |
Q |
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||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42838290 |
atgaagcgtatttcagtaaattgcacaaaattggccttgagtttgttgagttagcattttttattcaaccataaataaatcctctaaagatatgacaacc |
42838191 |
T |
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| Q |
403 |
catgcatgaagcaaattttaaggaagactttaactgtgcaactgcttacaccaaacaatta |
463 |
Q |
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| T |
42838190 |
catgcatgaagcaaattttaaggaagactttaactgtgcaactgcttacaccaaacaatta |
42838130 |
T |
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