View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_low_16 (Length: 408)
Name: NF18211_low_16
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 184 - 387
Target Start/End: Original strand, 24200089 - 24200291
Alignment:
| Q |
184 |
aaatattttcctataatacatcatccagtgaaatatattttctttgctgagttaatgttactgatagtcgcagcacagcttttctgatagaccaaatggt |
283 |
Q |
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| T |
24200089 |
aaatattttcctataatacatcatccagtgaaatatattttctttgttgagttaatgttactcatagtcgcagcacagcttttctgatagaccaaatggt |
24200188 |
T |
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| Q |
284 |
cattttgatattaaaatgtagctgaaatgctacatatatacacttatatagtcaatatttcgatacatagcatcgacgtttcagatttaaggcttgtatg |
383 |
Q |
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| T |
24200189 |
ca-tttgatattaaaatgtagctgaaatgctacatatatacacttatatagtcagtatttcgatacatagcatcgacatttcagatttaaggcttgtatg |
24200287 |
T |
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| Q |
384 |
atat |
387 |
Q |
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|||| |
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| T |
24200288 |
atat |
24200291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 3680353 - 3680441
Alignment:
| Q |
18 |
gacaatctatcggccaacactttagcaagaagtttgtataaacatcctaagagggaaatcggacgaaactccttaaaagtaaaaggatt |
106 |
Q |
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| T |
3680353 |
gacattctaccggccaacactttagcaagaagtttataaaggcatcctaaaagggaaataggacgaaactccttcaaagtaaacggatt |
3680441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 6230202 - 6230034
Alignment:
| Q |
1 |
tagagctcatcactttagacaatctatcggccaacactttagcaagaagtttgtataaacatcctaagagggaaatcggacgaaactccttaaaagtaaa |
100 |
Q |
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| T |
6230202 |
tagaactcatcactttagacaatctatcggccaacactttagcaagaagtttgtataaacatcctaaaagggaaatcggacgaaactccttcaaagtaaa |
6230103 |
T |
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| Q |
101 |
aggattgttgacctttggtataagagtaacaaagtagcacnnnnnnntcctcggcaccacctcattacc |
169 |
Q |
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| T |
6230102 |
aggattgttgacctttggtataagagtaacaaagtaggacaaaaaactcttcggcaccacctcattacc |
6230034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 38969059 - 38968891
Alignment:
| Q |
1 |
tagagctcatcactttagacaatctatcggccaacactttagcaagaagtttgtataaacatcctaagagggaaatcggacgaaactccttaaaagtaaa |
100 |
Q |
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| T |
38969059 |
tagagctcataaattttgacattctaccggccaacactttagcaagaagtttgtaaaggcatcctaagcgggaaataggacgaaactccttcaaaatgaa |
38968960 |
T |
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| Q |
101 |
aggattgttgacctttggtataagagtaacaaagtagcacnnnnnnntcctcggcaccacctcattacc |
169 |
Q |
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| T |
38968959 |
aggatttttaatctttgggattaaagtaacaaaataggacaaaaaactcctcggcaccacctcattacc |
38968891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 55351520 - 55351417
Alignment:
| Q |
30 |
gccaacactttagcaagaagtttgtataaacatcctaagagggaaatcggacgaaactccttaaaagtaaaaggattgttgacctttggtataagagtaa |
129 |
Q |
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|||||||||||||||||||||||||| | || |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| || || | ||||| |
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| T |
55351520 |
gccaacactttagcaagaagtttgtaaaggcaccctaagagggaaataggacgaaactccttcaaagtgaaaggattgtttaccttagggattaaagtaa |
55351421 |
T |
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| Q |
130 |
caaa |
133 |
Q |
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|||| |
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| T |
55351420 |
caaa |
55351417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 44682460 - 44682326
Alignment:
| Q |
30 |
gccaacactttagcaagaagtttgtataaacatcctaagagggaaatcggacgaaactccttaaaagtaaaaggattgttgacctttggtataagagtaa |
129 |
Q |
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|||||||||| |||||||||||||| | ||||||||||||||| || ||| || ||||||| ||||| |||||||| ||||||||||| || | ||||| |
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| T |
44682460 |
gccaacactt--gcaagaagtttgtagagacatcctaagagggatatgggatgatactccttcaaagtgaaaggattattgacctttggaattaaagtaa |
44682363 |
T |
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| Q |
130 |
caaagtagcacnnnnnnntcctcggcaccacctcatt |
166 |
Q |
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|||| ||| || ||||||||||||||||||| |
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| T |
44682362 |
caaaataggacaagaaactcctcggcaccacctcatt |
44682326 |
T |
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