View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18211_low_19 (Length: 354)
Name: NF18211_low_19
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 40572726 - 40572443
Alignment:
| Q |
16 |
atgaacccaaatcccttacccttatatcgtttctctttctttcaccatcccatttggtgacgccatgtaatgacaaatggctactgtgctattatttgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40572726 |
atgaacccaaatcccttacccttatatcgtttctctttctttcaccatcccatttggtgacgccatgtaatgacaaatggctactgtgctattatttgtt |
40572627 |
T |
|
| Q |
116 |
gacaacgacaacaatctggctttggagatgagtagtaccgctttgaagtagctctgcctcttggagtctgatgagagcaagttttctggttatatttcta |
215 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40572626 |
gacaactacaacaatctcgctttggagatgagtagtaccgctttgaagtagctctgcctcttggagtctgatgagagcaagttttctagttatatttcta |
40572527 |
T |
|
| Q |
216 |
tagataggtgaaattattacagtacgaaggaagcatgggacgtttttggcatcgtactgtagtatgtaataattgatccctcca |
299 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40572526 |
tagataggtgaaataattacagtacgaagggagcatgggacgtttttggcatcgtactgtagtatgtaataattgatccctcca |
40572443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University