View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_low_21 (Length: 324)
Name: NF18211_low_21
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 31703778 - 31703475
Alignment:
| Q |
17 |
caaatatacaaaaaacacaattccaacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttgtggatcggaca |
116 |
Q |
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| T |
31703778 |
caaatatacaaaaaacacaattccaacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttgaggatcggaca |
31703679 |
T |
|
| Q |
117 |
cgttctcctttaggataaattctgaggatatttttctgtgtgaacctgaaaagcatatacatgtgaattaagatggtaggttttattcagcatgtcgtag |
216 |
Q |
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| T |
31703678 |
cgttctcctttaggataaattctgaggatatttttctgtgtgaacctgaaaagcatatacatgtgaattaagatggtaggttttattcagcatgtcgtag |
31703579 |
T |
|
| Q |
217 |
gtgttgtcatacggtagaaatgctaatcgtcaagtaagtttgataggcacctaattagatcaggcccatgagatttagaagcagttttgagtttcttctc |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31703578 |
gtgttgtcatacggtagaaatgctaattgtcaagtaagtttgataggcacctaattaggtcaggcccatgagatttagaagcagttttgagtttcttctc |
31703479 |
T |
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| Q |
317 |
actc |
320 |
Q |
| |
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|||| |
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| T |
31703478 |
actc |
31703475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 31653429 - 31653278
Alignment:
| Q |
22 |
atacaaaaaacacaattccaacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttgtggatcggacacgttc |
121 |
Q |
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|||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| |
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| T |
31653429 |
ataccaaaaacacaattctaacctgcatattgaatgcaaccatctgagctccatacatccaccctaaatgtggcctaaaatttgtggattgaacacgttc |
31653330 |
T |
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| Q |
122 |
tcctttaggataaattctgaggatatttttctgtgtgaacctgaaaagcata |
173 |
Q |
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| T |
31653329 |
tcctttaggataaattctaaggatatttttttgcgtgaacctgaaaaacata |
31653278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 320
Target Start/End: Complemental strand, 31653235 - 31653145
Alignment:
| Q |
230 |
gtagaaatgctaatcgtcaagtaagtttgataggcacctaattagatcaggcccatgagatttagaagcagttttgagtttcttctcactc |
320 |
Q |
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|||||||||||||| || | |||||||||||| |||||||||| || | |||||||| | |||||||| ||||||||||||||||||| |
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| T |
31653235 |
gtagaaatgctaatgttcgtgaaagtttgataggtacctaattagctcggctccatgagactcagaagcagatttgagtttcttctcactc |
31653145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 35509024 - 35508955
Alignment:
| Q |
41 |
aacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttgtggat |
110 |
Q |
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| T |
35509024 |
aacctgcatattgaatgcaaccatctgagctccatacatccacccaagatgtggcttgaaatttgtggat |
35508955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 35522758 - 35522703
Alignment:
| Q |
42 |
acctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcct |
97 |
Q |
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|||||||| || |||| |||||||||||||||||||||||||||| | ||||||| |
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| T |
35522758 |
acctgcatgttaaatgcgaccatctgagctccatacatccaccctatatgtggcct |
35522703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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