View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_low_24 (Length: 255)
Name: NF18211_low_24
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 11104025 - 11104246
Alignment:
| Q |
16 |
atgttgaaaagttgacaacatatctcttcttcaagaaaatattatgagtttgattcttgaaatcgtctatttgaaaggtagctcaatcttaataaaagaa |
115 |
Q |
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| T |
11104025 |
atgttgaaaggttgacaacatatctcttctttaagaaaatattatgagtttgattcttgaaatcgtctatttgaaaggtagctcaatcttaataaaaaaa |
11104124 |
T |
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| Q |
116 |
actcagatatttcaccgtcaactttaaaattattctcaaaaacctaaacctaaaccgtaaaaatatcttgtggcatctattaaaggttaagtagcattcc |
215 |
Q |
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| T |
11104125 |
actcagatattttaccatcaactttaaaattaatctcaaaaacttaaacctaaaccgtaaaaatatcttgtggcatctattaaaggttaagtagcattcc |
11104224 |
T |
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| Q |
216 |
atatgctgtttcttgaactatt |
237 |
Q |
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| T |
11104225 |
atatgctgtttcttgaactatt |
11104246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 11590409 - 11590501
Alignment:
| Q |
16 |
atgttgaaaagttgacaacatatctcttcttcaagaaaatattatgagtttgattcttgaaatcgtctatttgaaaggtagctcaatcttaat |
108 |
Q |
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| T |
11590409 |
atgttgaaaagttgacaacttatctctttttcaaaaaaagattatcaatttgattcttggaatggtttatatgaaagatagttcaatcttaat |
11590501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 11590781 - 11590748
Alignment:
| Q |
204 |
aagtagcattccatatgctgtttcttgaactatt |
237 |
Q |
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| T |
11590781 |
aagtagcattccatatgctgtttcttgaactatt |
11590748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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