View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_low_25 (Length: 251)
Name: NF18211_low_25
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_low_25 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 16872346 - 16872104
Alignment:
| Q |
7 |
agtgagatgaaggatatatgacaagaattgttggaacatagaaagtatacacacctttctctttcaccaaaaagattgtaaaatatacgaagagctcatt |
106 |
Q |
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| T |
16872346 |
agtgaaatgaaggatatatgacaagaattgttggaacatagaaagtatacacacctttctctttcaccaaaaagattgtaaaatatacgaagagctcatt |
16872247 |
T |
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| Q |
107 |
acgtttgagctttaaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagctttggagtattacta |
206 |
Q |
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| T |
16872246 |
acgtttgagctttaaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagcttcggagtattacta |
16872147 |
T |
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| Q |
207 |
ctagagattgttagtggaagaagaaacacaagtatttttgacatt |
251 |
Q |
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| T |
16872146 |
ctagagattgttagtggaagaagaa--acaagtatttttgacatt |
16872104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 36286373 - 36286510
Alignment:
| Q |
110 |
tttgagctttaaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagctttggagtattactacta |
209 |
Q |
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| T |
36286373 |
tttgacctttaaatgcagtcgctacatatctccagaatacgcaatgcaaggaattgtttccgagcaatgtgatgtctttagctttggagtattactacta |
36286472 |
T |
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| Q |
210 |
gagattgttagtggaagaagaaacacaagtatttttga |
247 |
Q |
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| T |
36286473 |
gagattgtttttggtagaagaaacacaagtctttttga |
36286510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 40823674 - 40823616
Alignment:
| Q |
180 |
gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaag |
238 |
Q |
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| T |
40823674 |
gatgtctttagctttggtgttttgatactagagattattagtgggagaagaaactcaag |
40823616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 19939357 - 19939410
Alignment:
| Q |
179 |
tgatgtctttagctttggagtattactactagagattgttagtggaagaagaaa |
232 |
Q |
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| T |
19939357 |
tgatgtctttagctttggagttttacttcttgagattattagtggaagaagaaa |
19939410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 19970496 - 19970549
Alignment:
| Q |
179 |
tgatgtctttagctttggagtattactactagagattgttagtggaagaagaaa |
232 |
Q |
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| T |
19970496 |
tgatgtctttagctttggagttttacttcttgagattattagtggaagaagaaa |
19970549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 20231783 - 20231851
Alignment:
| Q |
180 |
gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagtatttttgac |
248 |
Q |
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| T |
20231783 |
gatgtttttagctttggtgtattgctactagagattgttatcggaagaagaaactcaagtttttatgac |
20231851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 20243855 - 20243914
Alignment:
| Q |
180 |
gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagt |
239 |
Q |
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| T |
20243855 |
gatgtttttagctttggtgtattgctactagagattgttatcggaagaagaaactcaagt |
20243914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 20005204 - 20005149
Alignment:
| Q |
183 |
gtctttagctttggagtattactactagagattgttagtggaagaagaaacacaag |
238 |
Q |
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| T |
20005204 |
gtcttcagctttggagttttgctaatagagattgttagtggaagacgaaactcaag |
20005149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 20264242 - 20264301
Alignment:
| Q |
180 |
gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagt |
239 |
Q |
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| T |
20264242 |
gatgtttttagctttggtgtattgctactagagattgttatcgggagaagaaactcaagt |
20264301 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 1091486 - 1091531
Alignment:
| Q |
179 |
tgatgtctttagctttggagtattactactagagattgttagtgga |
224 |
Q |
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| T |
1091486 |
tgatgtatttagctttggtgtattattactagagattgtaagtgga |
1091531 |
T |
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