View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_low_3 (Length: 838)
Name: NF18211_low_3
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 395 - 829
Target Start/End: Original strand, 6432457 - 6432890
Alignment:
| Q |
395 |
ttagtatgtataaactttccnnnnnnnttggaatatgtggaaggtactatatatatttgtgttggtgaagaagaaaggggtaagagcttggacagattat |
494 |
Q |
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| T |
6432457 |
ttagtatgtataaactttccaaaaaaattggaatatgtggaaggtactatatatatttgggttggtgaagaagaaaggggtaagagcttggacagattat |
6432556 |
T |
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| Q |
495 |
gacattcatattggaaatacaacgacaaacaaggttgaatttgctcatagttagttaaaaaagaatctagcagataatatggtgatatatgtaaaaattg |
594 |
Q |
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| T |
6432557 |
gacattcatattggaaatacaacgacaaacaaggttgaatttgctcatagttagttaaaaaagaatctagcagataatatggtgatatatgtaaaaattg |
6432656 |
T |
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| Q |
595 |
ggtttcaaataacacgatagcacacttagatacaagtctagtttgaaaagagcatgatttcaatggaacacagaagatgtaaaaatcatgttcatatata |
694 |
Q |
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| T |
6432657 |
ggtttcaaataacacgatagcacacttagatacaagtctagtttgaaaagaacatgatttcaatggaacacaaaagatgtaaaaatcatgttcatatata |
6432756 |
T |
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| Q |
695 |
taatctgaaatgggtaaacacacctctaggtgtgtaggacttcgttcctcttctgctctggtactggggtgttcaaattatacaaaaggttaatacaaaa |
794 |
Q |
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| T |
6432757 |
taatctggaatgggtaaacacacctctaggtgtgtaggacttcgttcctcttctgctctggtactggggtgttcaaatcatacaaaaggttaatacaaaa |
6432856 |
T |
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| Q |
795 |
attgcacacgaaaaatgagcaatacacaggttctg |
829 |
Q |
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| T |
6432857 |
gttgcacac-aaaaatgagcaatacaaaggttctg |
6432890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 6432099 - 6432458
Alignment:
| Q |
20 |
agtgtgttagtgtcacttctaccgagttaacgtactttatttaaannnnnnn--gtatggtgtacgagaaggaaaacaatgtcgagctctagagacgtgt |
117 |
Q |
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| T |
6432099 |
agtgtgttagtgtcacttctaccg--ttcacgtactttatttaattttttttttgtatggtgtacgagaaggaaaacaatgtcgagctctagagacgtgt |
6432196 |
T |
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| Q |
118 |
catgattcattgaaatatctaaataatgatccgaagataaatgtgattaattgagacacttctatgatgaatgttgttgtcccaatttttcctaactata |
217 |
Q |
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| T |
6432197 |
catgat-cattgaaatatctaaataatgatccgaagataaatgtgattaactgagacacttctatgatgaatgatgttgtcccaatttttccttactata |
6432295 |
T |
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| Q |
218 |
tttatgtattgtagtggtaccacatctaaaacaatgccatacaagatgta--atatattac-aaagtgacagatatcaaatctaaagatggga-----at |
309 |
Q |
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| T |
6432296 |
ttgttgtattgtagtggtaccacatctaaaacaatgtcatacaagatgtaggacatattacgaaagtgacagatatcaaatctaaaggtgggaatgagat |
6432395 |
T |
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| Q |
310 |
gagatcaaatccaaagatgaatgtgaagctatactggagtctgagtcgaagaaaacgtaagtt |
372 |
Q |
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| T |
6432396 |
gagatcaaatccaaagatgaatgtgaagctatactggagtcttggtcgaagaaaacataagtt |
6432458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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