View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18211_low_5 (Length: 717)
Name: NF18211_low_5
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 624; Significance: 0; HSPs: 24)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 22 - 685
Target Start/End: Original strand, 3349472 - 3350135
Alignment:
| Q |
22 |
catattaaagagtttgtgttggacattagttttgatcaacgctataagataccttcatccttattctcctaccaaggtttacaacatttaaatctgaatt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3349472 |
catattaaagagtttgtgttggacattagttttgatcaacgctaaatgataccttcatccttattctcctgccaaggtttacaacatttaaatctgaatt |
3349571 |
T |
|
| Q |
122 |
attgctggcttaaacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacat |
221 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3349572 |
attgctggcttaaacctccaacaatttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacat |
3349671 |
T |
|
| Q |
222 |
gatatctggctgccccctgcttgagagattgacattgacaaaaattgatggtttaacccatattaatatccatgcaccaaatctcaagttttttgaaatc |
321 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3349672 |
gatgtctggctgccccctgcttgagagattgacattgacaaaaattgatggtttaacccatattaatatccatgcaccaagtctcaagttttttgaaatc |
3349771 |
T |
|
| Q |
322 |
gaagatgaatttgagagtattaactttgacaacacttttcaattagctacagtattcgtttatatgaaatctaaaagcaatcaaggtagattgcatggat |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3349772 |
gaagatgaatttgagagtattaactttgacaacacttttcaattagctacaatattcgtttatatgaaatctaaaagcaatcaaggtagattgcatggat |
3349871 |
T |
|
| Q |
422 |
tctcaagcaatttgctcaaatttttcgatcatctacctcgcatacagagcctaaagattgacaatggatttttaaaggtacactgctcatccaactccct |
521 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3349872 |
tctctagcaatttgctcaaatttttcgatcatctacctcgcatacagagcctaaagattgacgatggatttttaaaggtacactgctcatccaactccct |
3349971 |
T |
|
| Q |
522 |
acaaatttataatgaacctccataatgtgtatgcaactcttgatatgttttgactctcaccttatgctcttagtttcaaaaatattatattctgattaga |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3349972 |
acaaatttataatgaacctccataatgtgtatgcaactcttgatatgttttgactctcaccttatgctcttagtttcaaaaatattatattctgattaga |
3350071 |
T |
|
| Q |
622 |
gacattctcctgttttggtttagtatttggctgcaggtattgtgccaccaaaacttcctacatt |
685 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3350072 |
gacattctcctgttttggtttagtatttggctgcaggtattgtgccagcaaaacttcctacatt |
3350135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 23 - 681
Target Start/End: Complemental strand, 9818849 - 9818211
Alignment:
| Q |
23 |
atattaaagagtttgtgttggacattagttttgatcaacgctataagataccttcatccttattctcctaccaaggtttacaacatttaaatctgaatta |
122 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| ||||| |
|
|
| T |
9818849 |
atattaaagagtttgtgttggacatttgttttgatcaacgctataagataccttcatccttattctcctgccaaggtttacatcatttagatcttaatta |
9818750 |
T |
|
| Q |
123 |
ttgctggcttaaacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacatg |
222 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9818749 |
ttgttggcttaaacctccaacaatgtttgaaggctttcggaatcagaaaagtctttatttgaatcgggttacaatgactcaagtagctttcaataacatg |
9818650 |
T |
|
| Q |
223 |
atatctggctgccccctgcttgagagattgacattgacaaaaattgatggtttaacccatattaatatccatgcaccaaatctcaagttttttgaaatcg |
322 |
Q |
| |
|
||| |||| |||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
9818649 |
atagctggatgccccctactagagaaattgacattgacaaaaattgatggtttaacccatattaatattgatgcaccaaatctcaagttttttgaagtcg |
9818550 |
T |
|
| Q |
323 |
aagatgaatttgagagtattaactttgacaacacttttcaattagctacagtattcgtttatatgaaatctaaaagcaatcaaggtagattgcatggatt |
422 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
9818549 |
acgaagaatttgagagtattaactttgacaacacttttcaattatctattgtattattttatatgaaatctaaaagcaatcaaggtagattgaatgggtt |
9818450 |
T |
|
| Q |
423 |
ctcaagcaatttgctcaaatttttcgatcatctacctcgcatacagagcctaaagattgacaatggatttttaaaggtacactgctcatccaactcccta |
522 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| | ||||| |
|
|
| T |
9818449 |
ctcaagcaatttgcccaaaattttt----atctacctcgcatacagagcctaaagattaccgatggatttttaaaggtacaatgctcatccaccccccta |
9818354 |
T |
|
| Q |
523 |
caaatttataatgaacctccataatgtgtatgcaactcttgatatgttttgactctcaccttatgctcttagtttcaaaaatattatattctgattagag |
622 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||||||||||||||||||| || ||| ||| |||||||||||||| ||||||||| |
|
|
| T |
9818353 |
caaatttataatgaaccacaataatgtgtatgaaactcttgatatgttttga-------------ctgttactttaaaaaatattatattttgattagag |
9818267 |
T |
|
| Q |
623 |
acattctcctgttttggtttagtatttggctgcaggtattgtgccaccaaaacttccta |
681 |
Q |
| |
|
|||||||| ||||||| || | ||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
9818266 |
acattctcttgttttgcttcaatatttggct---ggtattatgccaacaaaacttccta |
9818211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 536
Target Start/End: Complemental strand, 2948412 - 2947894
Alignment:
| Q |
18 |
aaggcatattaaagagtttgtgttggacattagttttgatcaacgctataagataccttcatccttattctcctaccaaggtttacaacatttaaatctg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
2948412 |
aaggcatattaaagagtttgtgttggacatttgttttgatcaacgctataagataccttcatccttattctcctgccaaggtttacatcatttagatctg |
2948313 |
T |
|
| Q |
118 |
aattattgctggcttaaacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaata |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2948312 |
aattattgttggcttaaacctccaacaaagtttgaaggcttccggagtatgaaaattctttatttgaatcgggttacaatgagtcaagatgctttcaata |
2948213 |
T |
|
| Q |
218 |
acatgatatctggctgccccctgcttgagagattgacattgacaaaaattgatggtttaacccatattaatatccatgcaccaaatctcaagttttttga |
317 |
Q |
| |
|
||||||||| |||||||||| |||| |||| |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2948212 |
acatgatatatggctgccccgtgctagagaaattgacattggcaaaaattgatggtttaactcatattaatattcatgcaccaaatctcaagttttttga |
2948113 |
T |
|
| Q |
318 |
aatcgaagatgaatttgagagtattaactttgacaacacttttcaattagctacagtattcgtttatatgaaatctaaaagcaatcaaggtagattgcat |
417 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2948112 |
agtcgacgatgaatttgagagtattaactttgacaacacttttcaattagctaatgtattcatttatatgaaatctaaaagcaatcaaggtagattgcat |
2948013 |
T |
|
| Q |
418 |
ggattctcaagcaatttgctcaaatttttcgatcatctacctcgcatacagagcctaaagattgacaatggatttttaaaggtacactgctcatccaact |
517 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| |||||||||||||||||||| |||||| |||||| ||||||||||||||||| | || |||| |||| |
|
|
| T |
2948012 |
ggattctctagcaatttggccaatttttttgatcatctacctcgcatacaaagcctacagattgctgatggatttttaaaggtataatgttcattcaacc |
2947913 |
T |
|
| Q |
518 |
ccctacaaatttataatga |
536 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2947912 |
tcctacaaatttataatga |
2947894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 75 - 681
Target Start/End: Original strand, 9820139 - 9820728
Alignment:
| Q |
75 |
ttcatccttattctcctaccaaggtttacaacatttaaatctgaattattgctggcttaaacctc--caacaacttttgaaggcttccggaatctgaaaa |
172 |
Q |
| |
|
|||||||||||| |||| ||||| |||||| |||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||| |||| |
|
|
| T |
9820139 |
ttcatccttattttcctgccaagatttacatcatttagatctgaattattgttggcttaaacctctccaacaacgtttgaaggcttccgaaatctaaaaa |
9820238 |
T |
|
| Q |
173 |
gtctttatttgaatcgggtt-acaatgactcaagatgctttcaataacatgatatctggctgccccctgcttgagagattgacattgacaaaaattgatg |
271 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||||||| |||||| |||||| |
|
|
| T |
9820239 |
gtctttatttgaatcgggtttagaatgactcaagatgctttcaataacatgatatttggctgcccccttctagagaaattgacattaacaaaa-ttgatg |
9820337 |
T |
|
| Q |
272 |
gtttaacccatattaatatccatgcaccaaatctcaagttttttgaaatcgaagatgaatttgagagtattaactttgacaacacttttcaattagctac |
371 |
Q |
| |
|
||||| |||||| |||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9820338 |
gtttatcccata---atatttatgcaccaaatctcatgttttttgaagtcgacgatgaatttgagagtattaactttgacaacagttttcaattagctac |
9820434 |
T |
|
| Q |
372 |
agtattcgtttatatgaaatctaaaagcaatcaaggtagattgcatggattctcaagcaatttgctcaaatttttcgatcatctacctcgcatacagagc |
471 |
Q |
| |
|
|||||| |||||| |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||| |
|
|
| T |
9820435 |
tgtattcatttataagaaatctaaaagtaatcaaggtagattgcatggattctctagcaatttgtccaaatttttcgatcatctaacttgcatacagagc |
9820534 |
T |
|
| Q |
472 |
ctaaagattgacaatggatttttaaaggtacactgctcatccaactccctacaaatttataatgaacctccataatgtgtatgcaactcttgatatgttt |
571 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||||||||| || |||||||||||||||||||||| | |||||||| ||||||||||| ||||||| |
|
|
| T |
9820535 |
ctaaagattgccgatggatttttaaaggtacaatgctcatcc-accccctacaaatttataatgaaccacaataatgtgcatgcaactctt--tatgttt |
9820631 |
T |
|
| Q |
572 |
tgactctcaccttatgctcttagtttcaaaaatattatattctgattagagacattctcctgttttggtttagtatttggctgcaggtattgtgccacca |
671 |
Q |
| |
|
||| | ||||||| ||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| | || |
|
|
| T |
9820632 |
tga-------------cggttagtttaaaaaatattatattctgattagagacattcttttgttttgcttcagtatttggctgcaggtattgtgctagca |
9820718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 373 - 681
Target Start/End: Original strand, 9809638 - 9809931
Alignment:
| Q |
373 |
gtattcgtttatatgaaatctaaaagcaatcaaggtagattgcatggattctcaagcaatttgctcaaatttttcgatcatctacctcgcatacagagcc |
472 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9809638 |
gtattcatttatatgaaatctaaaagtaatcagggtagattgcatggattctctagcaatttgcccaaatttttcgatcatctacctcgcatacagagcc |
9809737 |
T |
|
| Q |
473 |
taaagattgacaatggatttttaaaggtacactgctcatccaactccctacaaatttataatgaacctccataatgtgtatgcaactcttgatatgtttt |
572 |
Q |
| |
|
||||||||| | ||||||||||||||||||| ||||||||| || |||||||||||||||||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
9809738 |
taaagattgccgatggatttttaaaggtacaatgctcatcc-accccctacaaatttataatgaaccacaataatgtgtaagcaactcttgatatgtttt |
9809836 |
T |
|
| Q |
573 |
gactctcaccttatgctcttagtttcaaaaatattatattctgattagagacattctcctgttttggtttagtatttggctgcaggtattgtgccaccaa |
672 |
Q |
| |
|
|| | |||| ||||||||||||||||| ||||||||||||||||| ||||||| || | |||||||||||||||||||||||| ||| |
|
|
| T |
9809837 |
ga-------------cggttag-ttcaaaaatattatattttgattagagacattctcttgttttgcttcaatatttggctgcaggtattgtgccagcaa |
9809922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 268 - 418
Target Start/End: Original strand, 9716401 - 9716551
Alignment:
| Q |
268 |
gatggtttaacccatattaatatccatgcaccaaatctcaagttttttgaaatcgaagatgaatttgagagtattaactttgacaacacttttcaattag |
367 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
9716401 |
gatggtttaacccatattaatattcatgcaccaaatctcaagttttttgaagtcgacggtgaattttagagtattaactttggcaacacttttcaattag |
9716500 |
T |
|
| Q |
368 |
ctacagtattcgtttatatgaaatctaaaagcaatcaaggtagattgcatg |
418 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9716501 |
ctattgtattcatttatatgaaatctaaaagcaatcaaggtagagtgcatg |
9716551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 3340593 - 3340852
Alignment:
| Q |
17 |
aaaggcatattaaagagtttgtgttggacattagttttgatcaacgctataagataccttcatccttattctcctaccaaggtttacaacatttaaatct |
116 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| || | | ||||||||| ||||||| | ||||||||| | ||| |||| ||||||||| | || |
|
|
| T |
3340593 |
aaaggtatattaaagagtttgtgctggacattaggttaaaaccacgctataaaataccttgctgcttattctcttgtcaaagtttgcaacatttagaact |
3340692 |
T |
|
| Q |
117 |
gaattattgctggcttaaacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaat |
216 |
Q |
| |
|
||||||||| || ||||| |||||||| || |||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||||| | |
|
|
| T |
3340693 |
gaattattgttgccttaatcctccaacgacgtttgaaggcttccggaatttgaaaagtctttctttgtttgaagttacaatgactcaagatgcttttgaa |
3340792 |
T |
|
| Q |
217 |
aacatgatatctggctgccccctgcttgagagattgacattgacaaaaattgatggttta |
276 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
3340793 |
aacatgatatgtggctgccccctgcttgaagaattgacattatataaaattgatggttta |
3340852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 131 - 446
Target Start/End: Original strand, 3341308 - 3341625
Alignment:
| Q |
131 |
ttaaacctccaacaactt-ttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaag-atgctttcaataacatgatatct |
228 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||| |||| | ||||| |||| | |||| |||||||| | ||||||| | |||||||||||| |
|
|
| T |
3341308 |
ttaaacctccaacaacatcttgaacgcttccggaatttgaatactctttctttgtctgtcgttagaatgactccatcatgcttttgaaaacatgatatct |
3341407 |
T |
|
| Q |
229 |
ggctgccccctgcttgagagattgacattgacaaaaattgatggtttaacccatattaatatccatgcaccaaatctcaagttttttgaaatcgaagatg |
328 |
Q |
| |
|
|||||||||| ||||| ||||||||||| | |||||||||||||||| || |||||||| ||||||||||||||||||| ||| || ||| | || |
|
|
| T |
3341408 |
agctgccccctacttgaagaattgacattgaaagaaattgatggtttaacacagattaatattcatgcaccaaatctcaagtgtttagatatcttatgtg |
3341507 |
T |
|
| Q |
329 |
aatttgagagtattaactttgacaacacttttcaattagctacagtattcgtttatatgaaatctaaaagcaatcaaggtagattgcatggattctcaag |
428 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||| ||||| ||| | || ||||| ||||||||| | |||||||||||| ||| || |
|
|
| T |
3341508 |
aatttgagagtattaactttgacgacactttacaattagctctagtatctgttattttgttctctaagagcaatcaaattggattgcatggatgctctag |
3341607 |
T |
|
| Q |
429 |
caatttgctcaaattttt |
446 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3341608 |
caatttgctcaaattttt |
3341625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 167 - 371
Target Start/End: Complemental strand, 4322912 - 4322708
Alignment:
| Q |
167 |
tgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacatgatatctggctgccccctgcttgagagattgacattgacaaaaat |
266 |
Q |
| |
|
||||||||||| || | |||| ||||||| || |||||||||||| | ||||||||||| |||||| ||||||| | ||| ||||||| || | |
|
|
| T |
4322912 |
tgaaaagtcttgatctaaatctggttacagtggatcaagatgcttttgaaaacatgatatccaaatgccccttgcttgaaaagatgaaattgacagaagt |
4322813 |
T |
|
| Q |
267 |
tgatggtttaacccatattaatatccatgcaccaaatctcaagttttttgaaatcgaagatgaatttgagagtattaactttgacaacacttttcaatta |
366 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||| |||||||||||||||||| ||| |
|
|
| T |
4322812 |
tgatggtttaacccaaattaatatccatgcaccaaatctcaagttttttgaaatcgaaggtctattcgagggtattacctttgacaacacttttcagtta |
4322713 |
T |
|
| Q |
367 |
gctac |
371 |
Q |
| |
|
||||| |
|
|
| T |
4322712 |
gctac |
4322708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 585 - 683
Target Start/End: Complemental strand, 2947884 - 2947786
Alignment:
| Q |
585 |
atgctcttagtttcaaaaatattatattctgattagagacattctcctgttttggtttagtatttggctgcaggtattgtgccaccaaaacttcctaca |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
2947884 |
atgctcttagtttcaaaaatattatattctgattagagacattctcctgttttgctttagtatttggctacaggtatcgtgccagaaaaacttcctaca |
2947786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 127 - 276
Target Start/End: Original strand, 3340853 - 3341002
Alignment:
| Q |
127 |
tggcttaaacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacatgatat |
226 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| | |||| |||||||||||||||||| | |||||||||| |
|
|
| T |
3340853 |
tggcttaaacctccaacaacatttgaaggcttccggaatttgaaaagtctttctttgtctaaagttagaatgactcaagatgcttttgaaaacatgatat |
3340952 |
T |
|
| Q |
227 |
ctggctgccccctgcttgagagattgacattgacaaaaattgatggttta |
276 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||||||||||||| |
|
|
| T |
3340953 |
ctggctgccccctgcttgaagaattgacattaaatgaaattgatggttta |
3341002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 3341153 - 3341271
Alignment:
| Q |
127 |
tggcttaaacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacatgatat |
226 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||||| |||||||||||| |||| | |||| |||||||||||||||||| | |||||||||| |
|
|
| T |
3341153 |
tggcttaaagctccaacaacatttgaaggtttccggaatttgaaaagtctttctttgtttaaagttagaatgactcaagatgcttttgaaaacatgatat |
3341252 |
T |
|
| Q |
227 |
ctggctgccccctgcttga |
245 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3341253 |
ctggctgccccctgcttga |
3341271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 3341007 - 3341121
Alignment:
| Q |
131 |
ttaaacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacatgatatctgg |
230 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||| |||| | |||| ||||||||||||||| || | |||||||||||||| |
|
|
| T |
3341007 |
ttaaacctccaacaacatttgaaggcttccggaatttgaaaagtctttctttgtctgtcgttagaatgactcaagatgcatttgaaaacatgatatctgg |
3341106 |
T |
|
| Q |
231 |
ctgccccctgcttga |
245 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
3341107 |
ctgccctctgcttga |
3341121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 581 - 683
Target Start/End: Original strand, 3341944 - 3342046
Alignment:
| Q |
581 |
ccttatgctcttagtttcaaaaatattatattctgattagagacattctcctgttttggtttagtatttggctgcaggtattgtgccaccaaaacttcct |
680 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
3341944 |
ccttatgctgttagttttaaaaacattatattctgattagagagattctcttgttttgcctcagtatttggctgcaggtattgtgccagtaaagcttcct |
3342043 |
T |
|
| Q |
681 |
aca |
683 |
Q |
| |
|
||| |
|
|
| T |
3342044 |
aca |
3342046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 232 - 479
Target Start/End: Complemental strand, 4334737 - 4334478
Alignment:
| Q |
232 |
tgccccctgcttgagagattgacattgacaaaaattgatggtttaacccatattaatatccatgcaccaaatctcaagttttttgaaatcgaagatgaat |
331 |
Q |
| |
|
|||||| ||||||| | |||| ||||| | || || |||||||||| || |||||||| ||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
4334737 |
tgccccttgcttgaaaagttgagattgagagaattttatggtttaacgcaaattaatattcatgcaccaaatctcaagttttttgaaatcgttggtgaat |
4334638 |
T |
|
| Q |
332 |
ttgagagtattaactttgacaacacttttcaattagctacagtattcgtttat------------atgaaatctaaaagcaatcaaggtagattgcatgg |
419 |
Q |
| |
|
||||| | ||| ||||| ||||||||| |||||| |||| || || ||||| ||| ||||| ||||||||| |||||| | ||| |
|
|
| T |
4334637 |
ttgaggttgttacctttggcaacactttccaattaactaccatagtcatttattcatgtttggagttgacctctaatagcaatcaaagtagatcccctgg |
4334538 |
T |
|
| Q |
420 |
attctcaagcaatttgctcaaatttttcgatcatctacctcgcatacagagcctaaagat |
479 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| ||||| |||||| |||||| |||| |
|
|
| T |
4334537 |
atgctccagcaatttgctcaaatttttcgatcatcgacctcacatacaaagcctagagat |
4334478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 3361801 - 3361995
Alignment:
| Q |
18 |
aaggcatattaaagagtttgtgttggacattagttttgatcaacgctataagataccttcatccttattctcctaccaaggtttacaacatttaaatctg |
117 |
Q |
| |
|
||||| |||||||||||||||| || ||||| | || || ||||||||||||| |||| | ||||||||| | ||| ||||||| |||||| | | |
|
|
| T |
3361801 |
aaggcctattaaagagtttgtgctgcacatttggttagacgaacgctataagatcccttggtgcttattctcttgtcaaagtttacatcatttagaatta |
3361900 |
T |
|
| Q |
118 |
aattattgctggcttaaacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgcttt |
212 |
Q |
| |
|
|| | || |||||||||||||||||||| |||||||||||| ||| ||||||||||| | |||| || |||||||||||||||||| |||| |
|
|
| T |
3361901 |
aaatgctgttggcttaaacctccaacaacgtttgaaggcttcaagaacttgaaaagtcttgaattgagtcacgttacaatgactcaagattcttt |
3361995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 369
Target Start/End: Complemental strand, 6601681 - 6601370
Alignment:
| Q |
58 |
caacgctataagataccttcatccttattctcctaccaaggtttacaacatttaaatctgaattattgctggcttaaacctccaacaacttttgaaggct |
157 |
Q |
| |
|
||||||||||| |||||||||| |||||| || | ||||||||||| |||||| | | | | || ||||||| ||| ||| |||| ||| |||| | |
|
|
| T |
6601681 |
caacgctataaaataccttcatgcttattttcttgtcaaggtttacatcatttagaattatttaactgttggcttataccaccatcaacatttcaaggat |
6601582 |
T |
|
| Q |
158 |
tccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacatgatatctggctgccccctgcttgagagattgacatt |
257 |
Q |
| |
|
|| |||| |||| |||||| || || | | ||||| || ||||||||||||| | ||| |||||||| ||||| ||||||| |||||||||| |
|
|
| T |
6601581 |
tcaggaacttgaagagtcttgatctgcaacatgttaccttgtctcaagatgcttttgaaaacttgatatctacttgccctttgcttgaacgattgacatt |
6601482 |
T |
|
| Q |
258 |
gacaaaaattgatggtttaacccatattaatatccatgcaccaaatctcaagttttttgaaatcgaagatgaatttgagagtattaactttgacaacact |
357 |
Q |
| |
|
|| || |||||||||| | | || ||||||||||||| ||||||||| |||||||||| |||| | | |||||||| ||||| |||| | |||||| |
|
|
| T |
6601481 |
gatgaactttgatggtttcaactatcttaatatccatgccccaaatctccagttttttgacatcgggggtaaatttgaggatattagctttaagaacact |
6601382 |
T |
|
| Q |
358 |
tttcaattagct |
369 |
Q |
| |
|
| |||||||||| |
|
|
| T |
6601381 |
tctcaattagct |
6601370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 305
Target Start/End: Complemental strand, 3218348 - 3218177
Alignment:
| Q |
134 |
aacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacatgatatctggctg |
233 |
Q |
| |
|
||||||||||||| ||| |||||||| ||| ||||||||||| | | ||| |||||||||| ||||||||||||| | ||| ||||||| ||||| |
|
|
| T |
3218348 |
aacctccaacaacgtttaaaggcttcaagaacttgaaaagtcttgaactatatcaggttacaatggctcaagatgcttttgaaaacttgatatccggctg |
3218249 |
T |
|
| Q |
234 |
ccccctgcttgagaga-ttgacattgacaaaaattgatggtttaacccatattaatatccatgcaccaaatct |
305 |
Q |
| |
|
|| |||||| || ||| |||| |||| | | |||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
3218248 |
ccacctgctaga-agatttgaaattgttatatcttgaaggtttaacccaacttaatatccatgcaccaaatct |
3218177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 380 - 448
Target Start/End: Original strand, 3373147 - 3373215
Alignment:
| Q |
380 |
tttatatgaaatctaaaagcaatcaaggtagattgcatggattctcaagcaatttgctcaaatttttcg |
448 |
Q |
| |
|
||||| |||| || |||||||||||| ||| ||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
3373147 |
tttatctgaactccaaaagcaatcaaagtaaattgcatggatgctctagcaatttgctcaaatttttcg |
3373215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 221 - 367
Target Start/End: Original strand, 2006737 - 2006883
Alignment:
| Q |
221 |
tgatatctggctgccccctgcttgagagattgacattgacaaaaattgatggtttaacccatattaatatccatgcaccaaatctcaagttttttgaaat |
320 |
Q |
| |
|
|||||||| | ||||| |||||||| | |||||||||||| || |||||||||| ||||| || || || || ||||||||||| ||| |||| || || |
|
|
| T |
2006737 |
tgatatctagttgccctctgcttgaaaatttgacattgacagaacttgatggtttcacccaaataaacattcacgcaccaaatcttaaggttttggatat |
2006836 |
T |
|
| Q |
321 |
cgaagatgaatttgagagtattaactttgacaacacttttcaattag |
367 |
Q |
| |
|
| | | |||||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
2006837 |
ctgtggtaaatttgaggatattagctttgacaacactttccaattag |
2006883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 481
Target Start/End: Original strand, 3379217 - 3379299
Alignment:
| Q |
399 |
caatcaaggtagattgcatggattctcaagcaatttgctcaaatttttcgatcatctacctcgcatacagagcctaaagattg |
481 |
Q |
| |
|
||||||| | |||||||| ||| ||| |||||||||||||||||||||| ||||| ||||| ||| ||||||||| |||||| |
|
|
| T |
3379217 |
caatcaaagaagattgcacggacgctctagcaatttgctcaaatttttcgttcatcgacctcacatgcagagcctagagattg |
3379299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 481
Target Start/End: Complemental strand, 4322672 - 4322586
Alignment:
| Q |
395 |
aaagcaatcaaggtagattgcatggattctcaagcaatttgctcaaatttttcgatcatctacctcgcatacagagcctaaagattg |
481 |
Q |
| |
|
||||||||| | |||||| || ||||| || |||||||||||||||||||| ||||||| ||||| |||||| |||||| |||||| |
|
|
| T |
4322672 |
aaagcaatccaagtagatcgcctggatgttctagcaatttgctcaaattttttgatcatcgacctcacatacaaagcctagagattg |
4322586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 480
Target Start/End: Original strand, 3362181 - 3362263
Alignment:
| Q |
398 |
gcaatcaaggtagattgcatggattctcaagcaatttgctcaaatttttcgatcatctacctcgcatacagagcctaaagatt |
480 |
Q |
| |
|
|||||| || || ||||| ||||| ||| ||||||||||| |||||||| ||||||||||| |||||| |||||| ||||| |
|
|
| T |
3362181 |
gcaatctagttaaattgcgtggatgctctagcaatttgcttcgatttttcgttcatctacctcacatacaaagcctagagatt |
3362263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 467
Target Start/End: Original strand, 2006910 - 2006995
Alignment:
| Q |
382 |
tatatgaaatctaaaagcaatcaaggtagattgcatggattctcaagcaatttgctcaaatttttcgatcatctacctcgcataca |
467 |
Q |
| |
|
||| |||| ||| ||||||||||| |||||||||||||| | | ||||| |||||||| ||||| | |||||||| || |||||| |
|
|
| T |
2006910 |
tatttgaactctgaaagcaatcaaagtagattgcatggaagccccagcaacttgctcaatttttttgctcatctacatcacataca |
2006995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 130 - 369
Target Start/End: Original strand, 20953187 - 20953426
Alignment:
| Q |
130 |
cttaaacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacatgatatctg |
229 |
Q |
| |
|
|||||||||||||| || ||||||||||| || |||| |||||| || |||||| || ||| || ||||||||||||| | ||| |||| |||| |
|
|
| T |
20953187 |
cttaaacctccaacgacgtttgaaggctttaagaggttgaagagtcttgatctgaatctagtaacagtggctcaagatgcttttgaaaacttgatctctg |
20953286 |
T |
|
| Q |
230 |
gctgccccctgcttgagagattgacattgacaaaaattgatggtttaacccatattaatatccatgcaccaaatctcaagttttttgaaatcgaagatga |
329 |
Q |
| |
|
||||||| |||||||| | ||||| ||||| | || |||||||||| ||||| |||||||| | ||||||||||||||||||||| ||||| || | || |
|
|
| T |
20953287 |
gctgccctctgcttgaaaaattgaaattgatagaagttgatggtttcacccaaattaatattcgtgcaccaaatctcaagtttttggaaattgatggcga |
20953386 |
T |
|
| Q |
330 |
atttgagagtattaactttgacaacacttttcaattagct |
369 |
Q |
| |
|
|| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
20953387 |
atatgagggtattaacttcgacaacacttttcaattagct |
20953426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 167 - 371
Target Start/End: Original strand, 20934686 - 20934890
Alignment:
| Q |
167 |
tgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacatgatatctggctgccccctgcttgagagattgacattgacaaaaat |
266 |
Q |
| |
|
||||||||||| || |||||| || || || ||||||||||||| | ||| ||||||||||||||||||||||||| | ||||| |||||| || | |
|
|
| T |
20934686 |
tgaaaagtcttgatctgaatcatgtagcagtggctcaagatgcttttgaaaacttgatatctggctgccccctgcttgaaaaattgaaattgaccgaagt |
20934785 |
T |
|
| Q |
267 |
tgatggtttaacccatattaatatccatgcaccaaatctcaagttttttgaaatcgaagatgaatttgagagtattaactttgacaacacttttcaatta |
366 |
Q |
| |
|
|| ||| || |||| ||| ||||| ||||||||||||||||||||| |||||| | | |||| |||| ||||||||||| |||||||||| |||||| |
|
|
| T |
20934786 |
tggtggcttcgcccaaattgatatctgtgcaccaaatctcaagtttttggaaatccatggcgaatatgagggtattaactttaacaacactttccaatta |
20934885 |
T |
|
| Q |
367 |
gctac |
371 |
Q |
| |
|
||||| |
|
|
| T |
20934886 |
gctac |
20934890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 130 - 366
Target Start/End: Original strand, 20927265 - 20927501
Alignment:
| Q |
130 |
cttaaacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacatgatatctg |
229 |
Q |
| |
|
|||||||||||||| || |||||| |||| || | |||| |||||| || |||||| || ||| || ||||| ||| |||| | || ||||||||| |
|
|
| T |
20927265 |
cttaaacctccaacgacgtttgaaagctttaagagtttgaagagtcttgatctgaatctagtaacagtggctcaaaatgatttcgaaaatttgatatctg |
20927364 |
T |
|
| Q |
230 |
gctgccccctgcttgagagattgacattgacaaaaattgatggtttaacccatattaatatccatgcaccaaatctcaagttttttgaaatcgaagatga |
329 |
Q |
| |
|
|||||||||||||||| | ||| | ||| ||| || ||||||| || ||||| ||||||||| ||||||||||||||||||||| ||||| | | ||| |
|
|
| T |
20927365 |
gctgccccctgcttgaaaaatttaaattcacagaagttgatggcttcacccaagttaatatccgtgcaccaaatctcaagtttttgaaaatcaatggtga |
20927464 |
T |
|
| Q |
330 |
atttgagagtattaactttgacaacacttttcaatta |
366 |
Q |
| |
|
|| |||| |||||||||||| || ||||| |||||| |
|
|
| T |
20927465 |
atatgaggatattaactttgaaaatactttccaatta |
20927501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 39274180 - 39274290
Alignment:
| Q |
63 |
ctataagataccttcatccttattctcctaccaaggtttacaacatttaaatctgaattattgctggcttaaacctccaacaacttttgaaggcttccgg |
162 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||| |||| |||| |||||| || || ||| |||||||||||||||||||| |||||||||||| || |
|
|
| T |
39274180 |
ctataagataccttggtgcttattctcctgtcaaagtttgcaacgtttaaagttggcttgttgttggcttaaacctccaacaacatttgaaggcttcagg |
39274279 |
T |
|
| Q |
163 |
aatctgaaaag |
173 |
Q |
| |
|
|| ||||||| |
|
|
| T |
39274280 |
aacttgaaaag |
39274290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 39274384 - 39274432
Alignment:
| Q |
267 |
tgatggtttaacccatattaatatccatgcaccaaatctcaagtttttt |
315 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
39274384 |
tgatggtttaacccaagttaatattcatgcaccaaatctgaagtttttt |
39274432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 683
Target Start/End: Original strand, 20924146 - 20924225
Alignment:
| Q |
605 |
attatattctgatt-agagacattctcctgttttggtttagtatttggctgcaggtattgtgccaccaaaacttcctaca |
683 |
Q |
| |
|
|||||||||||||| |||| || ||| |||||||| || ||||||||||||||||| | |||||| ||| ||||||||| |
|
|
| T |
20924146 |
attatattctgatttagagtcactcttctgttttgcttcagtatttggctgcaggtgtggtgccagtaaagcttcctaca |
20924225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 467
Target Start/End: Original strand, 20934931 - 20935001
Alignment:
| Q |
397 |
agcaatcaaggtagattgcatggattctcaagcaatttgctcaaatttttcgatcatctacctcgcataca |
467 |
Q |
| |
|
|||||||||||||||| || ||| ||| ||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
20934931 |
agcaatcaaggtagatcgcgcggacactctagcaacatgctcaaatttttcgatcatcgacctcacataca |
20935001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 310
Target Start/End: Original strand, 20923583 - 20923852
Alignment:
| Q |
41 |
tggacattagttttgatcaacgctataagataccttcatccttattctcctaccaaggtttacaacatttaaatctgaattattgctggcttaaacctcc |
140 |
Q |
| |
|
|||||||| | || || ||||||||||| ||||||| | ||||||||| | ||| ||||||| ||||||||| || || || | |||||||||||| |
|
|
| T |
20923583 |
tggacatttggttcgagcaacgctataacataccttggtgcttattctcttgtcaaagtttacatcatttaaatttgttttgttcttcgcttaaacctcc |
20923682 |
T |
|
| Q |
141 |
aacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcgggttacaatgactcaagatgctttcaataacatgatatctggctgccccctg |
240 |
Q |
| |
|
| | | |||||||||||| ||| ||||||||||| | ||| | | |||||| || || |||||||||| | ||| |||||||||||| ||| || |
|
|
| T |
20923683 |
agcgatgtttgaaggcttcatgaacttgaaaagtcttcaattggaacaagttacagtggctaaagatgcttttgaaaacttgatatctggctcccctttg |
20923782 |
T |
|
| Q |
241 |
cttgagagattgacattgacaaaaattgatggtttaacccatattaatatccatgcaccaaatctcaagt |
310 |
Q |
| |
|
||||| | |||| |||| |||| ||||||| || || || ||||| || ||| |||||| | |||||| |
|
|
| T |
20923783 |
cttgaaaaattggttttgaaaaaagttgatggattcactcaaattaacattcattcaccaagtatcaagt |
20923852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 21237727 - 21237826
Alignment:
| Q |
127 |
tggcttaaacctccaacaacttttgaaggcttccggaatctgaaaagtctttatttgaatcg-ggttacaatgactcaagatgctttcaataacatgata |
225 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| || ||||||||| |||| |||| |||||||||||||||||||||||| | ||| ||||| |
|
|
| T |
21237727 |
tggcttaaacctccaacaacgtttgaaggcttcaggaacttggaaagtctttctttg-atcgaagttacaatgactcaagatgctttcgaaaacttgata |
21237825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 21238012 - 21238076
Alignment:
| Q |
400 |
aatcaaggtagattgcatggattctcaagcaatttgctcaaatttttcgatcatctacctcgcat |
464 |
Q |
| |
|
|||||| ||||||||||||||| ||| || | ||||||||| |||||| |||||| ||||||||| |
|
|
| T |
21238012 |
aatcaacgtagattgcatggatgctctagtagtttgctcaattttttcaatcatcgacctcgcat |
21238076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 369
Target Start/End: Original strand, 17970121 - 17970295
Alignment:
| Q |
195 |
aatgactcaagatgctttcaataacatgatatctggctgccccctgcttgagagattgacattgacaaaaattgatggtttaacccatattaatatccat |
294 |
Q |
| |
|
||||||||||||||| || | ||| ||||||| |||||||| | |||||| | ||| | ||||||| | || | ||||| || || ||||||| || |
|
|
| T |
17970121 |
aatgactcaagatgcctttgaaaacttgatatccggctgccctcagcttgaaaaattaatattgacatcagttaagggtttcactcagtttaatattcac |
17970220 |
T |
|
| Q |
295 |
gcaccaaatctcaagttttttgaaatcgaagatgaatttgagagtattaactttgacaacacttttcaattagct |
369 |
Q |
| |
|
||||||||||||||||||||| ||| | | | |||||||| | || | ||||||||||||||| ||||||||| |
|
|
| T |
17970221 |
gcaccaaatctcaagttttttcgcatcaatggtaaatttgagggcatcagctttgacaacactttgcaattagct |
17970295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 664
Target Start/End: Original strand, 17970486 - 17970542
Alignment:
| Q |
608 |
atattctgattagagacattctcctgttttggtttagtatttggctgcaggtattgt |
664 |
Q |
| |
|
||||||| |||| || ||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
17970486 |
atattcttattaaagcaattcttctgttttgctttagtatttggctgcaggtattgt |
17970542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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