View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18211_low_8 (Length: 540)
Name: NF18211_low_8
Description: NF18211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18211_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Complemental strand, 12004234 - 12003719
Alignment:
| Q |
11 |
catcatcagcaattaaaagtcataagaaatgcatttacacaagatcatccaaatgcactaagtgtaacaacaaaacttgaatgaagtgaagttgttacaa |
110 |
Q |
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| T |
12004234 |
catcatcagcaattaaaagtcataagaaatgcatttacacaagatcatccaaatgcactaagtgtaacaacaaaacttgaatgaagtgaagttgttacaa |
12004135 |
T |
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| Q |
111 |
ccatatttgtgaagtgtttttcctttaatctccactatgtttgcattgaaaaagtcctccatcatcataacttcaatcttggtcaacaagacttcaatat |
210 |
Q |
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| T |
12004134 |
ccatatttgtgaagtgtttttcctttaatctccactatgtttgcattgaaaaagtcctccatcatcataacttcaatcttggtcaacaagacttcaatat |
12004035 |
T |
|
| Q |
211 |
ttaggactttttcatcaagacctcaaaggagatattcaatcaaatgagaagcccaaaataagaaccaaccataagaaagtgaaacaacaaaccaaaaata |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12004034 |
ttaggactttttcatcaagacctcaaaggagatattcaatcaaatgtgaagcccaaaataagaaccaagcataagaaagtgaaacaacaaaccaaaaata |
12003935 |
T |
|
| Q |
311 |
tactaccaatgaaacagaagcaaccacacaaggaggatacaacccactgcgaccatcatcaagaccac-nnnnnnnnnnnnncaaagccagtcaatacca |
409 |
Q |
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| T |
12003934 |
tactaccaatgaaacagaagcaaccacacaagaaggatgcaacccactgcgaccatcatcaagaccacaaaaaaaaaaaaaacaaagccagtcaatacca |
12003835 |
T |
|
| Q |
410 |
atgtaaaagactatcggctcaaccacaagcaaggttccattgtataacaaatataactttgagaactaatagagggaaacattcggaaaaatctacactt |
509 |
Q |
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| T |
12003834 |
atgtaaaagactatcggctcaaccacaagcaaggttccattgtataacaaatataactttaagaactaatagagggaaacattcggaaaaacctacactt |
12003735 |
T |
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| Q |
510 |
gcccgagtgtcaatca |
525 |
Q |
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| T |
12003734 |
gcccgagtgtcaatca |
12003719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 37329666 - 37329581
Alignment:
| Q |
27 |
aagtcataagaaatgcatttacacaagatcatccaaatgcactaagtgtaacaacaaaacttgaatgaagtgaagttgttacaacc |
112 |
Q |
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| T |
37329666 |
aagtcttaagaaagtcaattacacaagatcattcaagtgcacaaagtgtaacaacaaaacttgaatgaaatgaagttgttacaacc |
37329581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 3051731 - 3051687
Alignment:
| Q |
168 |
tccatcatcataacttcaatcttggtcaacaagacttcaatattt |
212 |
Q |
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| T |
3051731 |
tccatcatcatatctttaatcttagttaacaagacttcaatattt |
3051687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 41830457 - 41830400
Alignment:
| Q |
155 |
attgaaaaagtcctccatcatcataacttcaatcttggtcaacaagacttcaatattt |
212 |
Q |
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|||||||| || ||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
41830457 |
attgaaaaggttttccatcatcatcacttcaggcttggtcaacaagacttcaatattt |
41830400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 20064725 - 20064778
Alignment:
| Q |
159 |
aaaaagtcctccatcatcataacttcaatcttggtcaacaagacttcaatattt |
212 |
Q |
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|||| ||| |||||||||||| ||| ||||||||| |||||||||||||||||| |
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| T |
20064725 |
aaaaggtcttccatcatcatatctttaatcttggttaacaagacttcaatattt |
20064778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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