View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18212_high_2 (Length: 578)
Name: NF18212_high_2
Description: NF18212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18212_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 23 - 566
Target Start/End: Complemental strand, 3599186 - 3598632
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3599186 |
cctctattgtacaaaatagcttgcaatagctttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgt |
3599087 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgta-----atgaatttttgaattgcat |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
3599086 |
agttcaggaattttcaaatt-cggggttggaataagagtgggagcatttgtttagtttgatttttggttatttgtatttcgatgactttttgaattgcat |
3598988 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattata------atctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtg |
304 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3598987 |
tgctatctaatttattatcatctctttttttgtttgttatattctagatctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcgatg |
3598888 |
T |
|
| Q |
305 |
ataatttatacggtggtggttgattaaaactgatgtgactgtgtctaccctctctatattgtgtgttgatcgagattgctgaagacaaaaacaaggcttg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
3598887 |
ataatttatacggtggtggttgattaaa-ctgatgtgactgtgtctaccctctctatattgtgtgttgatcgagattgctgaagaaaaaaa-aaggcttg |
3598790 |
T |
|
| Q |
405 |
ctgcaggtttagaaacacaaattgcggaaagccttaataattattgtcctaaattattaatccttttctagagattttaggatgctctaaggaggattgg |
504 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3598789 |
ctgcagctttagaaacacaaattgcagatggccttaataattattgtcctaaattattaatccttttctagagattttaggatgctctaaggaggattgg |
3598690 |
T |
|
| Q |
505 |
atacttggttagttactcttctcttttgaatagtttattttcatgagttgttagttcatttc |
566 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3598689 |
atacttg----gttactcttctcttttgaatagtttattttcatgagttgttagttcatttc |
3598632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 350
Target Start/End: Original strand, 22005768 - 22006105
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22005768 |
cctctattgtacaaaatagcttgcaatagctttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggttttttgattttgc |
22005867 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
22005868 |
agttcaggaattttcaaatt-cggggttgaaataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcat |
22005966 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22005967 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
22006066 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
22006067 |
tatacggtggtggttgatt-atactgatgtgactgtgtct |
22006105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 350
Target Start/End: Original strand, 7892544 - 7892881
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7892544 |
cctctattgtacaaaatagcttgcaacagctttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgc |
7892643 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| || |
|
|
| T |
7892644 |
agttcaggaattttcaaatt-cggggttgaaataagagtatgagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggat |
7892742 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7892743 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
7892842 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
7892843 |
tatacggtggtggttgatt-atactgatgtgactgtgtct |
7892881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 13604262 - 13604171
Alignment:
| Q |
100 |
ggtttgttgattttgcagttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat |
193 |
Q |
| |
|
|||||||||||||| || || | ||||||||||||| |||||| ||||||||| | |||||||||| ||||||||||||||||| ||||| |
|
|
| T |
13604262 |
ggtttgttgattttacattt-atgaattttcaaatta-ggggttaagataagagtaataacatttgtttaatttgatttttggttattcgtaat |
13604171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 23 - 350
Target Start/End: Original strand, 3590389 - 3590726
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3590389 |
cctctattgtacaaaatagcttgcaatagctttttagacttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgc |
3590488 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
3590489 |
agttcagcaattttcaaatt-cggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcat |
3590587 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3590588 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
3590687 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3590688 |
tatacggtggtggttgatt-aaactgatgtgactgtgtct |
3590726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 23 - 350
Target Start/End: Complemental strand, 41860809 - 41860472
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41860809 |
cctctattgtacaaaatagcttgcaatagctttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgc |
41860710 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
41860709 |
agttcaggaattttcaaatt-cggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcat |
41860611 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41860610 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
41860511 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
41860510 |
tatacggtggtggttgatt-atactgatgtgactgtgtct |
41860472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 350
Target Start/End: Original strand, 52681521 - 52681858
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
52681521 |
cctctattgtacaaaatagcttgcaacagctttttaggcttcttacaaaatcaaagtaattgttatataattggtgtggggtttagtttgttgattttgc |
52681620 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
| |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| || |
|
|
| T |
52681621 |
aattcaggaattttcaaatt-cggggttgaaataagagtatgagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggat |
52681719 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52681720 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggagatttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
52681819 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
52681820 |
tatacggtggtggttgatt-atactgatgtgactgtgtct |
52681858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 332
Target Start/End: Complemental strand, 30576688 - 30576448
Alignment:
| Q |
95 |
ggtttggtttgttgattttgcagttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat- |
193 |
Q |
| |
|
||||||||||||| |||||||||| || ||||| |||| | | |||||||||||||| | |||| |||||||| || ||||||| |||||||||||| |
|
|
| T |
30576688 |
ggtttggtttgttcattttgcagtagagaaatttccaaaatg-gcggttggaataagagcaagagcttttgtttaattggattttttgttatttgtaatt |
30576590 |
T |
|
| Q |
194 |
----gaatttttgaattgcattgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggtt-------g |
282 |
Q |
| |
|
|| |||||||||| ||||| |||||||||||||| |||||| ||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
30576589 |
cgacgagtttttgaatttcattgttatctaatttattaccatctc--------ttttatattttctagaacgaggtttatgcggcggtggttttcgtaac |
30576498 |
T |
|
| Q |
283 |
ttgcaagaaggccctcgcggtgataatttatacggtggtggttgattaaa |
332 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||| |||||||||||| |||| |
|
|
| T |
30576497 |
ttgcaagaaggcccctgcgctgatgatttatatggtggtggttgaataaa |
30576448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 23 - 350
Target Start/End: Original strand, 18200537 - 18200874
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18200537 |
cctctattgtacaaaatagcttgcaatagctttttagacttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgc |
18200636 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
18200637 |
agttcaggaattttcaaattt-ggggttggaataagaataggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcat |
18200735 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18200736 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
18200835 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18200836 |
tatacggtggtggttgatt-aaactgatgtgactgtgtct |
18200874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 350
Target Start/End: Original strand, 26950308 - 26950645
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26950308 |
cctctattgtacaaaatagcttgcaatagctttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgc |
26950407 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
26950408 |
agttcaggaattttcaaatt-cggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcat |
26950506 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|| ||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26950507 |
tgttatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
26950606 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| ||||| |
|
|
| T |
26950607 |
tatacggtggtggttgatt-atactgatgtgactatgtct |
26950645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 330
Target Start/End: Complemental strand, 36092739 - 36092421
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36092739 |
cctctattgtacaaaatagcttgcaatagctttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgc |
36092640 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
36092639 |
agttcatgaattttcaaatt-cggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatctgatgactttttgaattgcat |
36092541 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36092540 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
36092441 |
T |
|
| Q |
311 |
tatacggtggtggttgatta |
330 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
36092440 |
tatacagtggtggttgatta |
36092421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 12807663 - 12807577
Alignment:
| Q |
100 |
ggtttgttgattttgcagttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatt |
187 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||| |||||| ||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
12807663 |
ggtttgttgattttacagtttatgaattttcaaatta-ggggttaagataagagtaataacatttgtttaatttgatttttggttatt |
12807577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 23 - 350
Target Start/End: Complemental strand, 14995416 - 14995079
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14995416 |
cctctattgtacaaaatagcttgcaatagctttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgc |
14995317 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgta-----atgaatttttgaattgcat |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
14995316 |
agttcaggaattttcaaa-ttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactgtttgaattgcat |
14995218 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14995217 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgtggtgataatt |
14995118 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14995117 |
tatacggtggtggttgatt-aaactgatgtgactgtgtct |
14995079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 350
Target Start/End: Original strand, 32674060 - 32674397
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32674060 |
cctctattgtacaaaataacttgcaatagctttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgc |
32674159 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
32674160 |
aattcaggaattttcaaatt-cggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcat |
32674258 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32674259 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
32674358 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
32674359 |
tatacggtggtggttgatt-atactgatgtgactgtgtct |
32674397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 468 - 566
Target Start/End: Original strand, 4356289 - 4356387
Alignment:
| Q |
468 |
ttttctagagattttaggatgctctaaggaggattggatacttggttagttactcttctcttttgaatagtttattttcatgagttgttagttcatttc |
566 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
4356289 |
ttttctagagattttagcatgctctaagaaggatcggatacttggttagttactcttctcttttgaattgtttattttcaggagttgttagttcatttc |
4356387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 22636837 - 22636691
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgtt----atatgattggtgtggggtttggtttgttgatt |
111 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
22636837 |
cctcttttgttcaaaatagcttgcaatagctttttaggcttcttacaaaatcaaagtaattgttgttcatatgattggtgtggggttttgtttgttgatt |
22636738 |
T |
|
| Q |
112 |
ttgcagttcaggaattttcaaatttcggggttggaataagagtaggag |
159 |
Q |
| |
|
|||||||| | || |||||||| || | |||||||| ||||||||||| |
|
|
| T |
22636737 |
ttgcagtttatgagttttcaaa-ttggtggttggaaaaagagtaggag |
22636691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 350
Target Start/End: Complemental strand, 35595886 - 35595549
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35595886 |
cctctattgtacaaaatagcttgcaatagctttttaggcttcttacaaaatcaaaataattgttatatgattggtgtgggatttggtttgttgattttgc |
35595787 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
35595786 |
agttcaggaattttcaaatt-cggggttggaataagagtgggagcatttgtttagtttgatttttggttatttgtaatccgttgactttttgaattgcat |
35595688 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35595687 |
tgctatctaatttattatcatctccttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
35595588 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35595587 |
tatacggtggtggttgatt-aaactgatgtgactgtgtct |
35595549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 350
Target Start/End: Complemental strand, 2046185 - 2045848
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2046185 |
cctctattgtacaaaatagcttgcaacagctttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgtttattttgc |
2046086 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| || ||||||||||| || |
|
|
| T |
2046085 |
agttcaggaattttcaaatt-cggggttgaaataagagtatgagcatttatttagtttgatttttggttatttgtaatccgatgactttttgaattggat |
2045987 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2045986 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
2045887 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
2045886 |
tatacggtggtggttgatt-atactgatgtgactgtgtct |
2045848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 466 - 566
Target Start/End: Complemental strand, 45221567 - 45221467
Alignment:
| Q |
466 |
ccttttctagagattttaggatgctctaaggaggattggatacttggttagttactcttctcttttgaatagtttattttcatgagttgttagttcattt |
565 |
Q |
| |
|
||||||| ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
45221567 |
ccttttccagagattttagcatgctctaagaaggatcagatacttggttagttactcttctcttttgaattgtttattttcatgagtttttagttcattt |
45221468 |
T |
|
| Q |
566 |
c |
566 |
Q |
| |
|
| |
|
|
| T |
45221467 |
c |
45221467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 23 - 350
Target Start/End: Original strand, 13907050 - 13907387
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13907050 |
cctctattgtacaaaatagcttgcaatagctttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggttttttgattttgc |
13907149 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
13907150 |
agttcaggaattttcaaatt-cggggttgaaataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcat |
13907248 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13907249 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
13907348 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
13907349 |
tatacggtggtggttgatt-atactgatgtgaatgtgtct |
13907387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 23 - 350
Target Start/End: Original strand, 26454695 - 26455032
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454695 |
cctctattgtacaaaatagcttgcaacagctttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgc |
26454794 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
26454795 |
agttcaggaattttcaaatt-cggggttgaaataagagtatgagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcat |
26454893 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454894 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
26454993 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
26454994 |
tatacggtggtggttgatt-atactgatgtgactgtgtct |
26455032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 350
Target Start/End: Original strand, 40604532 - 40604869
Alignment:
| Q |
23 |
cctctattgtacaaaatagcttgcaatagctttttag------ta-aaaatcaaagtgattgttatatgattggtgtggggtttggtttgttgattttgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40604532 |
cctctattgtacaaaatagcttgcaacaactttttaggcttcttacaaaatcaaagtaattgttatatgattggtgtggggtttggtttgttgattttgc |
40604631 |
T |
|
| Q |
116 |
agttcaggaattttcaaatttcggggttggaataagagtaggagcatttgtttagtttgatttttggttatttgtaat-----gaatttttgaattgcat |
210 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| || |
|
|
| T |
40604632 |
agttcagaaattttcaaatt-cggggttgaaataagagtatgagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggat |
40604730 |
T |
|
| Q |
211 |
tgctatctaatttattatcatctcnnnnnnngtttattataatctagaacgaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40604731 |
tgctatctaatttattatcatctctttttttgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaaggccctcgcggtgataatt |
40604830 |
T |
|
| Q |
311 |
tatacggtggtggttgattaaaactgatgtgactgtgtct |
350 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
40604831 |
tatacggtggtggttgatt-atactgatgtgactgtgtct |
40604869 |
T |
|
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