View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18212_low_4 (Length: 232)

Name: NF18212_low_4
Description: NF18212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18212_low_4
NF18212_low_4
[»] chr4 (3 HSPs)
chr4 (1-218)||(43738129-43738345)
chr4 (1-175)||(47523880-47524067)
chr4 (90-127)||(55159399-55159436)
[»] chr8 (5 HSPs)
chr8 (1-216)||(216569-216784)
chr8 (1-216)||(693129-693344)
chr8 (1-216)||(697338-697553)
chr8 (1-216)||(730192-730407)
chr8 (1-216)||(854087-854302)
[»] scaffold1037 (1 HSPs)
scaffold1037 (1-216)||(2560-2771)
[»] scaffold1031 (1 HSPs)
scaffold1031 (1-216)||(2679-2890)
[»] chr1 (2 HSPs)
chr1 (1-214)||(17494590-17494799)
chr1 (82-127)||(37874742-37874787)
[»] chr2 (2 HSPs)
chr2 (1-175)||(36475954-36476141)
chr2 (82-127)||(5277175-5277220)
[»] chr5 (1 HSPs)
chr5 (82-214)||(4554011-4554144)
[»] chr6 (1 HSPs)
chr6 (66-127)||(9574355-9574416)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 43738345 - 43738129
Alignment:
Q  1 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagaaatctaattgtgaaacccaactattcatcttcattcattcatttatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  43738345 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaatgaatctaat-gtgaaacccagctattcatcttcattcattcatttatgt 43738247  T
Q  101 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaataaattcgaatatggaaaaccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  43738246 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaataaattcgtatctggaaaaccac 43738147  T
Q  201 cgcaacaagcttcactgt 218  Q
    | ||||||||||||||||    
T  43738146 cacaacaagcttcactgt 43738129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 47524067 - 47523880
Alignment:
Q  1 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaa------gaaa----tctaattgtgaaacccaactattcatcttcattcat 90  Q
    ||||||||||||||||| |||||||||||||||| ||||||| |||||||      ||||    ||||||| |||||||||||||||||| ||||||| |    
T  47524067 tcaatttatttttccctacaaaaatattcttgaaacaaaatagagagaaatggagagaaaagaatctaatt-tgaaacccaactattcattttcattcgt 47523969  T
Q  91 tcat----ttatgtgttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaa 175  Q
    ||||    ||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||||    
T  47523968 tcatacatttatgtgttattcaaacaaatcattcatcttcaccaattttttcttcctaaaattttagatctgaaacatcacaacaacaa 47523880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 55159399 - 55159436
Alignment:
Q  90 ttcatttatgtgttcttcaaacaaatcattcatcttca 127  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  55159399 ttcatttatgggttcttcaaacaaataattcatcttca 55159436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 216569 - 216784
Alignment:
Q  1 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagaaatctaattgtgaaacccaactattcatcttcattcattcatttatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  216569 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagggatctaattgtgaaacccaactattcatcttcattcattcatttatgt 216668  T
Q  101 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaataaattcgaatatggaaaaccac 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||    
T  216669 gttcttcaaacaaatcactcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaacaaatttggatctggaaaaccac 216768  T
Q  201 cgcaacaagcttcact 216  Q
    | ||||||||||||||    
T  216769 cacaacaagcttcact 216784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 693129 - 693344
Alignment:
Q  1 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagaaatctaattgtgaaacccaactattcatcttcattcattcatttatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  693129 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagggatctaattgtgaaacccaactattcatcttcattcattcatttatgt 693228  T
Q  101 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaataaattcgaatatggaaaaccac 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||    
T  693229 gttcttcaaacaaatcactcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaacaaatttggatctggaaaaccac 693328  T
Q  201 cgcaacaagcttcact 216  Q
    | ||||||||||||||    
T  693329 cacaacaagcttcact 693344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 697338 - 697553
Alignment:
Q  1 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagaaatctaattgtgaaacccaactattcatcttcattcattcatttatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  697338 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagggatctaattgtgaaacccaactattcatcttcattcattcatttatgt 697437  T
Q  101 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaataaattcgaatatggaaaaccac 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||    
T  697438 gttcttcaaacaaatcactcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaacaaatttggatctggaaaaccac 697537  T
Q  201 cgcaacaagcttcact 216  Q
    | ||||||||||||||    
T  697538 cacaacaagcttcact 697553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 730192 - 730407
Alignment:
Q  1 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagaaatctaattgtgaaacccaactattcatcttcattcattcatttatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  730192 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagggatctaattgtgaaacccaactattcatcttcattcattcatttatgt 730291  T
Q  101 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaataaattcgaatatggaaaaccac 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||    
T  730292 gttcttcaaacaaatcactcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaacaaatttggatctggaaaaccac 730391  T
Q  201 cgcaacaagcttcact 216  Q
    | ||||||||||||||    
T  730392 cacaacaagcttcact 730407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 854087 - 854302
Alignment:
Q  1 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagaaatctaattgtgaaacccaactattcatcttcattcattcatttatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  854087 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagggatctaattgtgaaacccaactattcatcttcattcattcatttatgt 854186  T
Q  101 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaataaattcgaatatggaaaaccac 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||    
T  854187 gttcttcaaacaaatcactcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaacaaatttggatctggaaaaccac 854286  T
Q  201 cgcaacaagcttcact 216  Q
    | ||||||||||||||    
T  854287 cacaacaagcttcact 854302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2771 - 2560
Alignment:
Q  1 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagaaatctaattgtgaaacccaactattcatcttcattcattcatttatgt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    |||||    
T  2771 tcaatttattttttccttcaaaaatattcttgaatcaaaataaagagaaaggaatctaattgtgaaacccaactattcatcttcgttcatt----tatgt 2676  T
Q  101 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaataaattcgaatatggaaaaccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||    
T  2675 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaacaaattcggatctgaaaaaccac 2576  T
Q  201 cgcaacaagcttcact 216  Q
    | ||||||||||||||    
T  2575 cacaacaagcttcact 2560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2890 - 2679
Alignment:
Q  1 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagaaatctaattgtgaaacccaactattcatcttcattcattcatttatgt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    |||||    
T  2890 tcaatttattttttccttcaaaaatattcttgaatcaaaataaagagaaaggaatctaattgtgaaacccaactattcatcttcgttcatt----tatgt 2795  T
Q  101 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaataaattcgaatatggaaaaccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||    
T  2794 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaaaacaaattcggatctgaaaaaccac 2695  T
Q  201 cgcaacaagcttcact 216  Q
    | ||||||||||||||    
T  2694 cacaacaagcttcact 2679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 17494590 - 17494799
Alignment:
Q  1 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaagaaatctaattgtgaaacccaactattcatcttcattcattcatttatgt 100  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||  ||||||||  |||||||    |||||||||||||||||||||||||||    
T  17494590 tcaatttatttttcccttcaaaactatttttgaaacaaaataaagagaaatgaatctaatc-tgaaacct---tattcatcttcattcattcatttatgt 17494685  T
Q  101 gttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaa-aataaattcgaatatggaaaacca 199  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| ||| | ||||| | ||||| |||| ||| | || ||||||||||    
T  17494686 gttctttaaacaaatcattcatcttcgccaatcttttcttcctaacagttgagatttggta-atcaccaaaacaagaatagatttggatttggaaaacca 17494784  T
Q  200 ccgcaacaagcttca 214  Q
     | ||||||||||||    
T  17494785 tcacaacaagcttca 17494799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 37874787 - 37874742
Alignment:
Q  82 ttcattcattcatttatgtgttcttcaaacaaatcattcatcttca 127  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  37874787 ttcattcattcatttatgtgttcttcaaacaaataattcatcttca 37874742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 36475954 - 36476141
Alignment:
Q  1 tcaatttatttttcccttcaaaaatattcttgaatcaaaataaagagaaa------gaaa----tctaattgtgaaacccaactattcatcttcattcat 90  Q
    ||||||||||||| ||| |||||||||||||||| ||||||| |||||||      ||||    ||||||| |||||||||||||||||||||||||| |    
T  36475954 tcaatttatttttgcctacaaaaatattcttgaaacaaaatagagagaaatggagagaaaacaatctaatt-tgaaacccaactattcatcttcattcgt 36476052  T
Q  91 tcat----ttatgtgttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaa 175  Q
    ||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||    
T  36476053 tcatacatttatgtgttcttcaaacaaatcattcatcttcaccaattttttcttcctaaaattttagatctggaacatcacaacaacaa 36476141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 5277220 - 5277175
Alignment:
Q  82 ttcattcattcatttatgtgttcttcaaacaaatcattcatcttca 127  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  5277220 ttcattcattcatttatgtgttcttcaaacaaataattcatcttca 5277175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 4554011 - 4554144
Alignment:
Q  82 ttcattcattcatttatgtgttcttcaaacaaatcattcatcttcaccaatcttttcttcctaaaagttgagatctggaacatcacaacaacaa-aataa 180  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||| || ||    
T  4554011 ttcaatcattcatttttgtgttcttcaaataaatcattcatcttcaccaatcttttcttcctacaaggtcagatctggaacatcaaaacaacaagaacaa 4554110  T
Q  181 attcgaatatggaaaaccaccgcaacaagcttca 214  Q
    ||||| || || ||||| ||| |||||| |||||    
T  4554111 attcggatttgaaaaactaccacaacaaacttca 4554144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 9574416 - 9574355
Alignment:
Q  66 aacccaactattcatcttcattcattcatttatgtgttcttcaaacaaatcattcatcttca 127  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9574416 aacccaattattcatcttcattcattcatttatgtgttcttcaaacaaataattcatcttca 9574355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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