View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18213_high_10 (Length: 305)
Name: NF18213_high_10
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18213_high_10 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 28 - 305
Target Start/End: Original strand, 23864138 - 23864415
Alignment:
| Q |
28 |
aaacatattatgaaatgaaatctatacaacaaaactaaatgacagataataagttctttcacaaacttgaaattctgaatctattttgaagcagaaacag |
127 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23864138 |
aaacatattatgaaatgaaatccaaacaacaaaactaaatgacagataataagttctttcacaaacttgaaattctgaatctattttgaagcagaaacag |
23864237 |
T |
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| Q |
128 |
ctctatcatatctagccttgaaatttgcaaaaagagggtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgta |
227 |
Q |
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| T |
23864238 |
ctctatcatatctagccttgaaatttgcaaaaagagggtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgta |
23864337 |
T |
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| Q |
228 |
aagctttggatacttttcagcagtgaaccatttcaaccctattaagtcttgaaacaaagggatccaaaaagctatgaa |
305 |
Q |
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| T |
23864338 |
aagctttggatacttttcagcagtgaaccatttcaaccctattaagtcttgaaacaaagggatccaaaaagctatgaa |
23864415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 65 - 305
Target Start/End: Original strand, 23860629 - 23860869
Alignment:
| Q |
65 |
aatgacagataataagttctttcacaaacttgaaattctgaatctattttgaagcagaaacagctctatcatatctagccttgaaatttgcaaaaagagg |
164 |
Q |
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| T |
23860629 |
aatgacagaaaataagtgctttcacaaacttgaaattctgaatctatttagaagcagaaacaagggcatcatatttagctttgaaaaatgcaaaaagagg |
23860728 |
T |
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| Q |
165 |
gtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgtaaagctttggatacttttcagcagtgaaccatttcaac |
264 |
Q |
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| T |
23860729 |
gtctctagcaggcacatgttccttcacagcaggatggttgagaaattcttggctccatttgtaaagctttggatacttttcagcattgaacaatttcaat |
23860828 |
T |
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| Q |
265 |
cctattaagtcttgaaacaaagggatccaaaaagctatgaa |
305 |
Q |
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| T |
23860829 |
tcagctatgtcttgaatcaaagggatccaaaaagctatgaa |
23860869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 154 - 303
Target Start/End: Original strand, 23856676 - 23856825
Alignment:
| Q |
154 |
gcaaaaagagggtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgtaaagctttggatacttttcagcagtga |
253 |
Q |
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| T |
23856676 |
gcaaagagaggttctctaggaggcatattttccttaacaattggatggttgagaaattcttggctccacttcgaaagtttgggacacttttcagcattca |
23856775 |
T |
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| Q |
254 |
accatttcaaccctattaagtcttgaaacaaagggatccaaaaagctatg |
303 |
Q |
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| T |
23856776 |
acaattgcaaccctgttatttcttgaatcaaagggatccaaaaagctatg |
23856825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 293
Target Start/End: Original strand, 23839890 - 23839999
Alignment:
| Q |
184 |
tccttcacaattggatggttgagaaattcttggctccatttgtaaagctttggatacttttcagcagtgaaccatttcaaccctattaagtcttgaaaca |
283 |
Q |
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| T |
23839890 |
tccttcacaacaggatggtcaagaaattcttgactccaattgtaaagctttggaaacttttcagctgtgaacaattgcaaccctattatgtcttgaacta |
23839989 |
T |
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| Q |
284 |
aagggatcca |
293 |
Q |
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| T |
23839990 |
gagggatcca |
23839999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 23843587 - 23843685
Alignment:
| Q |
157 |
aaaagagggtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgtaaagctttggatacttttcagcagtgaac |
255 |
Q |
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| T |
23843587 |
aaaagaggctctctaggaggaagagtttccttcacaacaggatggtcaagaaattcttgactccaattgtaaagctttgggaacttttcagctgtgaac |
23843685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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