View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18213_high_14 (Length: 276)
Name: NF18213_high_14
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18213_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 7293917 - 7293653
Alignment:
| Q |
1 |
ttctctcattgttattcatctcacacttagagtttagcttttcaatccaaca---tatcaatgattgcattgaaaataattggtaatttgtaatgtctcg |
97 |
Q |
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| T |
7293917 |
ttctctcattgttattcatctcacacttagagtttagcttttcaatccaacaacatatcaatgattgcattgaaaataattggtaatttgtaatgtctcg |
7293818 |
T |
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| Q |
98 |
cgccgtgctaaacattttctttttatgtcattatagggaaagggaatttctataacaaaacatataagagaggaagccataactagcctctactccagca |
197 |
Q |
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| T |
7293817 |
cgccgtgctaaacattttctttttatgtcattatagggaaagggaatttctttaacaaaacatataagagaggaagccataactagcctctactccagca |
7293718 |
T |
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| Q |
198 |
cacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaaaacactttgtctgtg |
262 |
Q |
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| T |
7293717 |
cacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaaaacactttgtctgtg |
7293653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 7298228 - 7298127
Alignment:
| Q |
161 |
ataagagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaaaacactttgtctg |
260 |
Q |
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| T |
7298228 |
ataagagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctggaccaaacactttgtttg |
7298129 |
T |
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| Q |
261 |
tg |
262 |
Q |
| |
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|| |
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| T |
7298128 |
tg |
7298127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 32704261 - 32704201
Alignment:
| Q |
197 |
acacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaaaacactttgt |
257 |
Q |
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| T |
32704261 |
acactccccataagcttggcaattgcagatttgggttgctcttatggaccaaacactttgt |
32704201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 40739822 - 40739785
Alignment:
| Q |
8 |
attgttattcatctcacacttagagtttagcttttcaa |
45 |
Q |
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| T |
40739822 |
attgttattcatctcacacttagtgtttagcttttcaa |
40739785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 27737051 - 27736941
Alignment:
| Q |
143 |
atttctataacaaaacatataagagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtg |
242 |
Q |
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|||||| ||||||||| | | ||||| ||||| ||||| | ||| || | || |||||||||||||||| | ||||||||||| ||||||| |||| || |
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| T |
27737051 |
atttctttaacaaaacctttgagagacgaagctataaccaacctatattgcaacacacttcccagaagcttggcaattgcagacttgggttgctcttttg |
27736952 |
T |
|
| Q |
243 |
gacaaaacact |
253 |
Q |
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| | ||||||| |
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| T |
27736951 |
ggccaaacact |
27736941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 5811711 - 5811620
Alignment:
| Q |
164 |
agagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaaaacacttt |
255 |
Q |
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| T |
5811711 |
agagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcagacttgggttgctcttttggaccaaacacttt |
5811620 |
T |
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