View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18213_high_15 (Length: 263)
Name: NF18213_high_15
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18213_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 5744796 - 5745040
Alignment:
| Q |
3 |
taggtctaatcaacgaaagaaaacatcgaagaatggtatcgaaccgagagtcagcacgccggtcgcgaatgaggaaacaaaaacagcttgatgagctttg |
102 |
Q |
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| T |
5744796 |
taggtctaatcaacgaaagaaaacatcgaagaatggtatcgaaccgagagtcagcacgccggtcgcgaatgaggaaacaaaaacagcttgatgagctttg |
5744895 |
T |
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| Q |
103 |
gtcacaagttgtttggctaaggaatgaaaatcatcaattactagataagctcaacaatttctgtgagactcatgataaagttgtccaagagaatgttcaa |
202 |
Q |
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| T |
5744896 |
gtcacaagttgtttggctaaggaatgaaaatcatcaattactagataagctcaacaatttctgtgagactcatgataaagttgtccaagagaatgttcaa |
5744995 |
T |
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| Q |
203 |
ttgaaagaacaagcttcggaacttcgacaaatggtgtgtgatatg |
247 |
Q |
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| T |
5744996 |
ttgaaagaacaagcttcggaacttcgacaaatggtgtgtgatatg |
5745040 |
T |
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Back To:
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Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 6066829 - 6067034
Alignment:
| Q |
30 |
gaagaatggtatcgaaccgagagtcagcacgccggtcgcgaatgaggaaacaaaaacagcttgatgagctttggtcacaagttgtttggctaaggaatga |
129 |
Q |
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| T |
6066829 |
gaaggatgatatcaaaccgcgaatcagcgcgtcgttcacgcatgaggaagcagaaacaccttgatgagctttggtcacaagttctttggctaaggaatga |
6066928 |
T |
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| Q |
130 |
aaatcatcaattactagataagctcaacaatttctgtgagactcatgataaagttgtccaagagaatgttcaattgaaagaacaagcttcggaacttcga |
229 |
Q |
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| T |
6066929 |
aaatcatcaacttatagagaaacttaaccatgtttctgagaatcatgatcaagttgttcaagagaatgctcagcttaaagaagaagctttggaacttcga |
6067028 |
T |
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| Q |
230 |
caaatg |
235 |
Q |
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| T |
6067029 |
caaatg |
6067034 |
T |
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