View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18213_high_17 (Length: 250)

Name: NF18213_high_17
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18213_high_17
NF18213_high_17
[»] chr8 (5 HSPs)
chr8 (1-239)||(31559452-31559691)
chr8 (3-239)||(31556448-31556690)
chr8 (66-144)||(31544655-31544733)
chr8 (32-141)||(31547775-31547884)
chr8 (59-144)||(31877206-31877291)
[»] chr2 (6 HSPs)
chr2 (58-144)||(8328449-8328535)
chr2 (66-142)||(6493517-6493593)
chr2 (66-139)||(9596925-9596998)
chr2 (66-139)||(33994623-33994696)
chr2 (67-139)||(18229432-18229504)
chr2 (66-139)||(21281552-21281624)
[»] chr7 (2 HSPs)
chr7 (67-144)||(30034432-30034509)
chr7 (66-140)||(45868101-45868175)
[»] chr5 (3 HSPs)
chr5 (67-144)||(32361823-32361900)
chr5 (67-144)||(32379054-32379131)
chr5 (61-140)||(40640266-40640345)
[»] chr4 (3 HSPs)
chr4 (66-143)||(55290062-55290139)
chr4 (67-142)||(38507765-38507840)
chr4 (61-139)||(30161971-30162049)
[»] chr3 (2 HSPs)
chr3 (65-139)||(32053543-32053617)
chr3 (61-139)||(50683112-50683190)
[»] chr1 (2 HSPs)
chr1 (54-140)||(38624993-38625079)
chr1 (67-141)||(46613936-46614010)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 31559452 - 31559691
Alignment:
Q  1 ccaactaggaaaaattattctagttttcaggaaagcaattacgaagcagcactgaataatcatcatgcggggatagctcagttgggagagcgtcagactg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  31559452 ccaactaggaaaaattattctagttttcaggaaagcaattacgaagcagcactgaataatcgttatgcggggatagctcagttgggagagcgtcagactg 31559551  T
Q  101 aagatctgaaggtcgtgtgttcgatccacgctcaccgca-tttttatgatctttttcttctacttttttattagaaaaagcagtatatggagtagtaatt 199  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559552 aagatctgaaggtcgcgtgttcgatccacgctcaccgcattttttatgatctttttcttctacttttttattagaaaaagcagtatatggagtagtaatt 31559651  T
Q  200 atatatgcattgacagtaaattttcagctggttacttctt 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31559652 atatatgcattgacagtaaattttcagctggttacttctt 31559691  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 31556448 - 31556690
Alignment:
Q  3 aactaggaaaaattattctagttttcaggaaagcaattacgaagcagcactgaataatcatcatgcggggatagctcagttgggagagcgtcagactgaa 102  Q
    |||||||||||| |||| | ||||||| ||| |||||||| || ||||||  | ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31556448 aactaggaaaaaatattatggttttcacgaatgcaattacaaatcagcacaaagtaatcatcatgcggggatagctcagttgggagagcgtcagattgaa 31556547  T
Q  103 gatctgaaggtcgtgtgttcgatccacgctcaccgca---tttttatgatctttttcttctacttttttattagaaaaagcagtat----atggagtagt 195  Q
    ||||||||||||| ||||| |||||||||||||||||   |||||||| | ||||||||    ||||||||||||||| |||||||    ||||| |  |    
T  31556548 gatctgaaggtcgcgtgtttgatccacgctcaccgcattctttttatg-tttttttctttattttttttattagaaaaggcagtatatgcatggaattat 31556646  T
Q  196 aattatatatgcattgacagtaaattttcagctggttacttctt 239  Q
    |||||||||| |||||||| ||||||||||||||||||||||||    
T  31556647 aattatatatacattgacaataaattttcagctggttacttctt 31556690  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 31544655 - 31544733
Alignment:
Q  66 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcattttt 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31544655 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattttt 31544733  T

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Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 31547775 - 31547884
Alignment:
Q  32 aaagcaattacgaagcagcactgaataatcatcatgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgc 131  Q
    ||||||||||  |||||||||  ||  |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31547775 aaagcaattagtaagcagcacgaaactatcaccaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgc 31547874  T
Q  132 tcaccgcatt 141  Q
    ||||||||||    
T  31547875 tcaccgcatt 31547884  T

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Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 31877291 - 31877206
Alignment:
Q  59 atcatcatgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcattttt 144  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  31877291 atcatcaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcaatttt 31877206  T

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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 8328535 - 8328449
Alignment:
Q  58 aatcatcatgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcattttt 144  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8328535 aatcaacatgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattttt 8328449  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 6493517 - 6493593
Alignment:
Q  66 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcattt 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6493517 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 6493593  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 9596925 - 9596998
Alignment:
Q  66 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgca 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9596925 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 9596998  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 33994696 - 33994623
Alignment:
Q  66 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgca 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33994696 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 33994623  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 18229432 - 18229504
Alignment:
Q  67 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgca 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18229432 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 18229504  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 21281624 - 21281552
Alignment:
Q  66 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgca 139  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||| ||||||||||    
T  21281624 tgcggggatagctcagttgggagagcctcaga-tgaagatccgaaggtcgcgtgtttgatccatgctcaccgca 21281552  T

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Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 30034509 - 30034432
Alignment:
Q  67 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcattttt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30034509 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattttt 30034432  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 45868175 - 45868101
Alignment:
Q  66 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcat 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45868175 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 45868101  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 32361900 - 32361823
Alignment:
Q  67 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcattttt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32361900 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattttt 32361823  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 32379131 - 32379054
Alignment:
Q  67 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcattttt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32379131 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattttt 32379054  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 40640345 - 40640266
Alignment:
Q  61 catcatgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcat 140  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40640345 catcaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 40640266  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 55290139 - 55290062
Alignment:
Q  66 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcatttt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55290139 tgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttt 55290062  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 38507840 - 38507765
Alignment:
Q  67 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcattt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38507840 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattt 38507765  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 30161971 - 30162049
Alignment:
Q  61 catcatgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgca 139  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30161971 catcaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 30162049  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 32053617 - 32053543
Alignment:
Q  65 atgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgca 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32053617 atgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 32053543  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 50683190 - 50683112
Alignment:
Q  61 catcatgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgca 139  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50683190 catcaagctgggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 50683112  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 38625079 - 38624993
Alignment:
Q  54 gaataatcatcatgcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcat 140  Q
    |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38625079 gaattatcaacaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 38624993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 46613936 - 46614010
Alignment:
Q  67 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgtgtgttcgatccacgctcaccgcatt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46613936 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatt 46614010  T

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