View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18213_high_18 (Length: 242)
Name: NF18213_high_18
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18213_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3806169 - 3805932
Alignment:
| Q |
1 |
cagtttggcaactccttattattaggtctcattttaatatgtgatgagttgtgatagttctgttacataaaaatagggatgcagttttgactttagactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
3806169 |
cagtttggcaactccttattattaggtctcattttaatatgtgatgagttgtgatagttctgttgcatgaaaatagggatgcagttttgactttagactt |
3806070 |
T |
|
| Q |
101 |
tataaaaaagagcacatacttcnnnnnnntaagcagaatctgttctcttcttagtattttttctttctttcaattatcaattatttgggcaaattgtgct |
200 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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|
| T |
3806069 |
tataaaaaagagcacatacttcaaaaaaataagcagaatctgttctcttcttagtattttttctttctttcacttatcaattatttgggcaaattgttct |
3805970 |
T |
|
| Q |
201 |
gtgcttttcatacccagaccacaagtgcatgtgttcat |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3805969 |
gtgcttttcatacccagaccacaagtgcatgtgttcat |
3805932 |
T |
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