View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18213_high_2 (Length: 536)
Name: NF18213_high_2
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18213_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 41 - 526
Target Start/End: Complemental strand, 28784298 - 28783797
Alignment:
| Q |
41 |
tatgacttactcctctctaacaaaatataatacatgtatctgatccaaatgttgacaagatgcatgtaatttt-------------gttacaaagagatt |
127 |
Q |
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| T |
28784298 |
tatgagttactcctctctaataaaatataatacatgtatctgatccaaatgttgacaagatgcatgtaattttttccttttgttttgttacaaagagatt |
28784199 |
T |
|
| Q |
128 |
acaattt---aagagaaaagattgatttcagttacattcttgtgcataattgttttgcagggttacatgtaacaattgactgcaaagaagcaaatggaca |
224 |
Q |
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| T |
28784198 |
acaattttttaagagaaaagattgatttcagttacattcttgtgcataattgttttgcagggttacatgtaacaattgactgcaaagaagcaaatggaca |
28784099 |
T |
|
| Q |
225 |
ttttaaaacaagaggggcaggtgagcttgataaaaatggaaatttcaaagtatctcttcctcaagaaattgtaaatgaaggtgaattgaaagaagaatgt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784098 |
ttttaaaacaagaggggcaggtgagcttgataaaaatggaaatttcaaagtatctcttcctcaagaaattgtaaatgaaggtgaattgaaagaagaatgt |
28783999 |
T |
|
| Q |
325 |
tatgctcagctgcatagtgcaacagctgcaccttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacaca |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28783998 |
tatgctcagctgcatagtgcaacagctgcaccttgtcctgctcatgatggcctgcaaaacaccaaaattgtcatcaagtcaaaatctgatgacaaacaca |
28783899 |
T |
|
| Q |
425 |
ccctaagtactgctgctgctggtaaactcaaattttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctatgct |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28783898 |
ccctaagtactgctgctgctggtaaactcaaattttcatcagcaacatgtacctccaaattcttttggcctctcttcaaacatcctctttttcctaagct |
28783799 |
T |
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| Q |
525 |
tc |
526 |
Q |
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| T |
28783798 |
tc |
28783797 |
T |
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