View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18213_high_23 (Length: 230)

Name: NF18213_high_23
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18213_high_23
NF18213_high_23
[»] chr8 (9 HSPs)
chr8 (16-176)||(32229927-32230087)
chr8 (37-177)||(35613620-35613760)
chr8 (43-121)||(16484139-16484217)
chr8 (36-121)||(9180715-9180800)
chr8 (36-121)||(11629511-11629596)
chr8 (37-117)||(5896301-5896381)
chr8 (36-121)||(34752674-34752759)
chr8 (37-103)||(13533473-13533539)
chr8 (37-103)||(13623013-13623079)
[»] chr4 (9 HSPs)
chr4 (66-177)||(31160437-31160548)
chr4 (43-157)||(43733928-43734042)
chr4 (36-111)||(53985867-53985942)
chr4 (42-112)||(5185474-5185544)
chr4 (36-122)||(32499557-32499643)
chr4 (35-168)||(16430977-16431110)
chr4 (36-121)||(42327887-42327972)
chr4 (39-111)||(54421404-54421476)
chr4 (46-121)||(38761369-38761444)
[»] chr6 (8 HSPs)
chr6 (35-177)||(21952472-21952614)
chr6 (36-111)||(16863252-16863327)
chr6 (36-121)||(10158939-10159024)
chr6 (36-103)||(30976026-30976093)
chr6 (36-103)||(30982465-30982532)
chr6 (36-103)||(30988629-30988696)
chr6 (70-108)||(14453398-14453436)
chr6 (42-134)||(25357657-25357749)
[»] chr2 (10 HSPs)
chr2 (35-177)||(8070966-8071108)
chr2 (52-177)||(33054859-33054983)
chr2 (37-177)||(4017046-4017186)
chr2 (42-111)||(43115040-43115109)
chr2 (37-177)||(24467309-24467449)
chr2 (62-157)||(22049766-22049861)
chr2 (39-111)||(36756951-36757023)
chr2 (36-121)||(10748061-10748146)
chr2 (74-157)||(37670658-37670741)
chr2 (42-105)||(648533-648596)
[»] scaffold0996 (1 HSPs)
scaffold0996 (36-163)||(1491-1618)
[»] chr1 (14 HSPs)
chr1 (36-159)||(33978129-33978252)
chr1 (36-111)||(12458781-12458856)
chr1 (42-121)||(49508558-49508637)
chr1 (42-120)||(4048443-4048521)
chr1 (43-121)||(27643354-27643432)
chr1 (42-112)||(28037662-28037732)
chr1 (42-111)||(8771250-8771319)
chr1 (42-111)||(45432813-45432882)
chr1 (43-112)||(51491762-51491831)
chr1 (39-105)||(33703688-33703754)
chr1 (70-139)||(30840966-30841035)
chr1 (36-121)||(39501136-39501221)
chr1 (37-121)||(7386676-7386760)
chr1 (47-135)||(17813599-17813687)
[»] chr5 (10 HSPs)
chr5 (77-176)||(33645908-33646007)
chr5 (39-112)||(10813139-10813212)
chr5 (37-177)||(6292385-6292525)
chr5 (36-122)||(23151280-23151366)
chr5 (36-122)||(28499187-28499273)
chr5 (37-177)||(29292921-29293061)
chr5 (44-164)||(3722730-3722850)
chr5 (36-120)||(13020906-13020990)
chr5 (42-132)||(24010363-24010453)
chr5 (36-120)||(13092430-13092514)
[»] chr7 (13 HSPs)
chr7 (36-163)||(31802476-31802603)
chr7 (43-121)||(18221454-18221532)
chr7 (36-121)||(513863-513948)
chr7 (42-111)||(34762683-34762752)
chr7 (73-168)||(24733510-24733605)
chr7 (42-117)||(31403829-31403904)
chr7 (42-112)||(19720468-19720538)
chr7 (43-121)||(27745715-27745793)
chr7 (36-122)||(41147765-41147851)
chr7 (43-157)||(42562037-42562151)
chr7 (36-121)||(43970053-43970138)
chr7 (42-111)||(34764095-34764163)
chr7 (36-122)||(12350720-12350806)
[»] scaffold0010 (1 HSPs)
scaffold0010 (42-121)||(236641-236719)
[»] chr3 (10 HSPs)
chr3 (43-93)||(2618681-2618731)
chr3 (83-177)||(49816068-49816162)
chr3 (42-112)||(52964144-52964214)
chr3 (42-112)||(54548321-54548391)
chr3 (71-121)||(19671254-19671303)
chr3 (45-122)||(2497091-2497168)
chr3 (37-106)||(20537710-20537779)
chr3 (73-111)||(11593923-11593961)
chr3 (39-157)||(51140119-51140237)
chr3 (37-121)||(29210843-29210927)
[»] scaffold0067 (1 HSPs)
scaffold0067 (36-122)||(10968-11054)
[»] scaffold0839 (1 HSPs)
scaffold0839 (42-111)||(4630-4699)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 32230087 - 32229927
Alignment:
Q  16 caataacttcattgcgaggcatgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaat 115  Q
    |||||| || |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  32230087 caataattttattgtgaggcatgttcggaggtaagtaaatagggtcgctcacactatagctagagcttccttatctcaccctagccttcatatttttaat 32229988  T
Q  116 gatgtatctgactacttgtactctttgattattaatgaaatggcttaagtttggctttgct 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  32229987 gatgtatctgactacttgtactctttgattattaatgaaatggcttaagtttacctttgct 32229927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 35613620 - 35613760
Alignment:
Q  37 tgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtac 136  Q
    |||| ||||||||||||||  ||| |||||  | ||||| ||||| ||||||||| |||||||||||||| ||||  |||||||||||    | ||||||    
T  35613620 tgttaggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgtatcttctcatttgtac 35613719  T
Q  137 tctttgattattaatgaaatggcttaagtttggctttgctc 177  Q
    ||||||||   |||||||||||| |||| ||| ||||||||    
T  35613720 tctttgatatctaatgaaatggcctaagcttgcctttgctc 35613760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 16484217 - 16484139
Alignment:
Q  43 gaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||||||| |||| ||| ||||| | ||| |||||||| ||||||||||||||||| ||| || ||||||||||||||    
T  16484217 gaggcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagtccctatgtttttaatgatgta 16484139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 9180800 - 9180715
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||| |||||||||||||||| || ||||| | ||| |||||||| ||  |||||||||||||||||||||| ||| || |||||    
T  9180800 atgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatctttcatcatgta 9180715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 11629511 - 11629596
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||| |||||||||||||||| || ||||| | ||| |||||||| || |||||||||||||| |||||||| ||| || |||||    
T  11629511 atgttaggaggcaagcaaatagagttgctcatagtattgctagagcatcattatctcaccctaggccccatatctttcatcatgta 11629596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 5896381 - 5896301
Alignment:
Q  37 tgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatga 117  Q
    |||| ||||||||| |||||  || ||||| | ||| ||||||||| |||||||||| |||||||||||||||||| ||||    
T  5896381 tgttaggaggcaagaaaatatagtagctcatagtattgctagagctgccttatctcatcctagcccccatatttttcatga 5896301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 34752759 - 34752674
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||| ||||||||||||||||  | ||||| | ||| |||||||| ||  |||||||||||||||||||||| ||| || |||||    
T  34752759 atgttaggaggcaagcaaatagaattgctcatagtattgctagagcatcactatctcaccctagcccccatatctttcatcatgta 34752674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 13533473 - 13533539
Alignment:
Q  37 tgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccc 103  Q
    |||| ||||||||||||||| |||  |||| |  ||||||| |||||||||||| ||||||||||||    
T  13533473 tgttaggaggcaagcaaataaggtaactcataacatagctaaagcttccttatcccaccctagcccc 13533539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 13623013 - 13623079
Alignment:
Q  37 tgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccc 103  Q
    |||| ||||||||||||||| |||  |||| |  ||||||| |||||||||||| ||||||||||||    
T  13623013 tgttaggaggcaagcaaataaggtaactcataacatagctaaagcttccttatcccaccctagcccc 13623079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 31160437 - 31160548
Alignment:
Q  66 acactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtactctttgattattaatgaaatggcttaagt 165  Q
    |||| ||||||| | ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31160437 acacaatagctaaaacttccttatctcatcctagccaccatattcttaatgatgtatctgactacttgtactctttgattattaatgaaatggcttaagt 31160536  T
Q  166 ttggctttgctc 177  Q
    ||| ||||||||    
T  31160537 ttgtctttgctc 31160548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 43733928 - 43734042
Alignment:
Q  43 gaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactactt-gtactcttt 141  Q
    |||||||||||||| ||| ||||| | ||| ||||||||| |||||||||| |||||||||||||| ||| |||||||||||  |||||| ||| || ||    
T  43733928 gaggcaagcaaatatggtagctcatagtattgctagagctgccttatctcatcctagcccccatatctttcatgatgtatct-tctacttggtattcctt 43734026  T
Q  142 gattattaatgaaatg 157  Q
    ||||||||||||||||    
T  43734027 gattattaatgaaatg 43734042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 53985942 - 53985867
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttt 111  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| ||||  || ||  ||||||||||||||||    
T  53985942 atgttcggaggcaagcaaatagggtcgctcacaacatagctagagcatcctattcccaatctagcccccatatttt 53985867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 5185544 - 5185474
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatattttt 112  Q
    |||| ||||| |||||||| ||||| | |||||||||||||||||||||||| | |||||||||| |||||    
T  5185544 ggagacaagctaatagggttgctcatagtatagctagagcttccttatctcatcttagcccccatcttttt 5185474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 32499557 - 32499643
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtat 122  Q
    ||||| |||||||||||||||| || ||||| | ||| ||| |||||||  ||||||| |||||||||||||||||| || ||||||    
T  32499557 atgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtat 32499643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 16430977 - 16431110
Alignment:
Q  35 catgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgt 134  Q
    |||||| ||||||||||||||| ||| ||||| |   ||||| ||| |||||||||||| |||||||||  ||||||| ||||| || |     ||||||    
T  16430977 catgttaggaggcaagcaaataaggttgctcatatgttagctcgaggttccttatctcatcctagcccctttatttttcatgatataccctctgacttgt 16431076  T
Q  135 actctttgattattaatgaaatggcttaagtttg 168  Q
    |||| |||||||| ||||||||||| ||| ||||    
T  16431077 actccttgattatcaatgaaatggcataaatttg 16431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 42327972 - 42327887
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||| |||||||||||||||| || ||||| | ||| |||||||| ||  |||||||||||||||||||||| ||| || |||||    
T  42327972 atgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatctttcatcatgta 42327887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 54421476 - 54421404
Alignment:
Q  39 ttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttt 111  Q
    ||||||||||||| |||| ||| | ||| | ||| ||||||||||||||||| || |||||||||||||||||    
T  54421476 ttcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagcccccatatttt 54421404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 38761444 - 38761369
Alignment:
Q  46 gcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    |||||| |||| ||| ||||| | ||| |||||||| ||||||||||||||||||| | || |||| |||||||||    
T  38761444 gcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagcctctatgttttcaatgatgta 38761369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 21952472 - 21952614
Alignment:
Q  35 catgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgt 134  Q
    |||||| || |||||||||||| ||| |||||  | ||||| |||||||||||||| || ||||||||| || ||||  |||||||| | || |||||||    
T  21952472 catgttaggcggcaagcaaataaggttgctcattcaatagcaagagcttccttatcccatcctagccccaatgttttatatgatgtacccgattacttgt 21952571  T
Q  135 actctttgattattaatgaaatggcttaagtttggctttgctc 177  Q
    ||||||| || ||||||||||||||||||||||| ||||||||    
T  21952572 actctttaatcattaatgaaatggcttaagtttgcctttgctc 21952614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 16863252 - 16863327
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttt 111  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| ||||  || ||  ||||||||||||||||    
T  16863252 atgttcggaggcaagcaaatagggtcgctcacaacatagctagagcatcctattcccaatctagcccccatatttt 16863327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 10159024 - 10158939
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||| |||||||||||||||| || ||||| | ||| |||||||| ||  |||||||||||||||||||||| ||| || |||||    
T  10159024 atgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagcccccatatctttcatcatgta 10158939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 30976093 - 30976026
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccc 103  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||| ||||  |||||  ||||||||    
T  30976093 atgttcggaggcaagtaaatagggtcactcacaatatagctagagcatcctattctcaaactagcccc 30976026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 30982532 - 30982465
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccc 103  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||| ||||  |||||  ||||||||    
T  30982532 atgttcggaggcaagtaaatagggtcactcacaatatagctagagcatcctattctcaaactagcccc 30982465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 30988696 - 30988629
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccc 103  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||| ||||  |||||  ||||||||    
T  30988696 atgttcggaggcaagtaaatagggtcactcacaatatagctagagcatcctattctcaaactagcccc 30988629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 14453436 - 14453398
Alignment:
Q  70 tatagctagagcttccttatctcaccctagcccccatat 108  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  14453436 tatagctagagcatccttatctcatcctagcccccatat 14453398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 25357657 - 25357749
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgt 134  Q
    ||||||||||||||| ||| ||||| |   ||||||||| || ||||||||| ||||||||| |  ||||  | |||||| ||||||||||||    
T  25357657 ggaggcaagcaaataaggtagctcataacttagctagagttttcttatctcatcctagcccctaccttttctaagatgtacctgactacttgt 25357749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 177
Target Start/End: Complemental strand, 8071108 - 8070966
Alignment:
Q  35 catgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgt 134  Q
    |||||| || |||||||||||| ||| |||||  | ||||| |||||||||||||| |||||||||||| || ||||  |||||||| | || |||||||    
T  8071108 catgttaggcggcaagcaaataaggttgctcattcaatagcaagagcttccttatcccaccctagccccaatgttttatatgatgtacccgattacttgt 8071009  T
Q  135 actctttgattattaatgaaatggcttaagtttggctttgctc 177  Q
    ||||||| || |||||||||||||| |||||||| ||||||||    
T  8071008 actctttaatcattaatgaaatggcctaagtttgcctttgctc 8070966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 33054859 - 33054983
Alignment:
Q  52 aaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtactctttgattattaat 151  Q
    ||||| ||| |||||| ||||||||||||| ||| ||||||||||||||||| |||| ||| |||||||| |  | || ||||| ||||| |||||||||    
T  33054859 aaatatggttgctcactctatagctagagcatccctatctcaccctagcccctatatctttgatgatgtaccaca-tatttgtattctttaattattaat 33054957  T
Q  152 gaaatggcttaagtttggctttgctc 177  Q
    ||||||||||||| ||| ||||||||    
T  33054958 gaaatggcttaagcttgtctttgctc 33054983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 177
Target Start/End: Complemental strand, 4017186 - 4017046
Alignment:
Q  37 tgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtac 136  Q
    |||| ||||||||||||||  ||| |||||  | ||||| ||||| ||||||||| |||||||||||||| ||||  |||||||||||    | ||||||    
T  4017186 tgttaggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgtatcttctcatttgtac 4017087  T
Q  137 tctttgattattaatgaaatggcttaagtttggctttgctc 177  Q
    ||||||||   |||||||||||| |||| ||| ||||||||    
T  4017086 tctttgatatctaatgaaatggcctaagcttgcctttgctc 4017046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 43115040 - 43115109
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttt 111  Q
    |||||||| |||||| ||| ||||| |  |||||||||||||||||||| ||||||||||||||||||||    
T  43115040 ggaggcaaacaaataaggtagctcataacatagctagagcttccttatcccaccctagcccccatatttt 43115109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 24467309 - 24467449
Alignment:
Q  37 tgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtac 136  Q
    |||| ||||||||||||||  ||| |||||  | ||||| ||||| ||||||||| |||||||||||||| ||||  |||||||||||    | ||||||    
T  24467309 tgttaggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgtatcttctcatttgtac 24467408  T
Q  137 tctttgattattaatgaaatggcttaagtttggctttgctc 177  Q
    ||||||||   |||| ||||||| |||| ||| ||||||||    
T  24467409 tctttgatatctaataaaatggcctaagcttgcctttgctc 24467449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 22049766 - 22049861
Alignment:
Q  62 gctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtactctttgattattaatgaaatg 157  Q
    |||||| ||||| | ||||| ||||||||| ||||| ||||||||||||||||||||||| ||  ||| |||||  |||| ||||| |||||||||    
T  22049766 gctcactctataacaagagcgtccttatcttaccctcgcccccatatttttaatgatgtaccttcctatttgtaacctttaattatgaatgaaatg 22049861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 36757023 - 36756951
Alignment:
Q  39 ttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttt 111  Q
    ||||||||||||| ||||  || ||||| | ||| ||||||||||||||||| || |||||||||||||||||    
T  36757023 ttcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagcccccatatttt 36756951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 10748061 - 10748146
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||| |||||||||||||||| || ||||| | ||| |||||||| ||  |||||||||||||||| ||||| ||| || |||||    
T  10748061 atgttaggaggcaagcaaatagagttgctcataatattgctagagcatcactatctcaccctagccctcatatctttcatcatgta 10748146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 37670741 - 37670658
Alignment:
Q  74 gctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactac-ttgtactctttgattattaatgaaatg 157  Q
    |||||||| || ||||| ||||||||||||||||||||| |||||||| | |||||| |||||| |||| |||||  ||||||||    
T  37670741 gctagagcatctttatcccaccctagcccccatattttttatgatgta-ccgactactttgtaccctttaattatggatgaaatg 37670658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 648533 - 648596
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagccccca 105  Q
    |||||||||||||||| || ||||| |  |||||||||||||| ||||| || |||||||||||    
T  648533 ggaggcaagcaaatagagtggctcatagcatagctagagcttctttatcacaacctagccccca 648596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 1618 - 1491
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactac-ttgt 134  Q
    |||||||||||||||| |||||||| ||||| | ||| |||||||||||||||| ||| |||||||||||||||||||||| |||| ||  |||| ||||    
T  1618 atgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatatttttaatgttgtacct-tctactttgt 1520  T
Q  135 actctttgattattaatgaaatggcttaa 163  Q
    |||| || ||||| ||||||||| |||||    
T  1519 actccttaattatgaatgaaatgacttaa 1491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 159
Target Start/End: Complemental strand, 33978252 - 33978129
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactac-ttgt 134  Q
    |||||||||||||||| |||||||| ||||| | ||| |||||||||||||||| ||| |||||||||||||||||||||| |||| ||  |||| ||||    
T  33978252 atgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatatttttaatgttgtacct-tctactttgt 33978154  T
Q  135 actctttgattattaatgaaatggc 159  Q
    |||| || ||||| |||||||||||    
T  33978153 actccttaattatgaatgaaatggc 33978129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 12458856 - 12458781
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttt 111  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| ||||  || ||  ||||||||||||||||    
T  12458856 atgttcggaggcaagcaaatagggtcgctcacaacatagctagagcatcctattcccaatctagcccccatatttt 12458781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 49508558 - 49508637
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    |||||||| |||||| ||| ||||| |  |||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  49508558 ggaggcaaacaaataaggtagctcataacatagctagagcttccttatcccaccctagcccccatattttctatgatgta 49508637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 4048521 - 4048443
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgt 120  Q
    |||||||||||||||  || | ||||||||||| |||||| || |||||||| |||||||||||||| ||| |||||||    
T  4048521 ggaggcaagcaaataaagttgttcacactatagttagagcatctttatctcatcctagcccccatatcttttatgatgt 4048443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 27643432 - 27643354
Alignment:
Q  43 gaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||||||| |||| ||| ||||| | ||| |||||||| ||||||||||||||||| ||| || ||||||||||||||    
T  27643432 gaggcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagtccctatgtttttaatgatgta 27643354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 28037662 - 28037732
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatattttt 112  Q
    |||||||||  |||||||| ||||| | ||||||||||||||| |||||||| |||||||||||| |||||    
T  28037662 ggaggcaagttaatagggttgctcatagtatagctagagcttctttatctcatcctagcccccatcttttt 28037732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 8771319 - 8771250
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttt 111  Q
    ||||| ||||||||| ||| ||||| |  |||||||||| ||||||||| ||||||||||||||||||||    
T  8771319 ggaggtaagcaaataaggtagctcataacatagctagagtttccttatcccaccctagcccccatatttt 8771250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 45432813 - 45432882
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttt 111  Q
    |||||||| |||||| ||| ||||| |  |||||||||||||||||||| ||||||||||||| ||||||    
T  45432813 ggaggcaaacaaataaggtagctcataacatagctagagcttccttatcccaccctagcccccgtatttt 45432882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 51491831 - 51491762
Alignment:
Q  43 gaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatattttt 112  Q
    ||||||||| |||||||| ||||| | |||| | ||||||||||||||||| |||| ||||||| |||||    
T  51491831 gaggcaagctaatagggttgctcataatataaccagagcttccttatctcatcctaacccccatcttttt 51491762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 33703754 - 33703688
Alignment:
Q  39 ttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagccccca 105  Q
    ||||||| ||||| ||||| |||||||| | |||||||||||||||  |||| ||| ||||||||||    
T  33703754 ttcggagacaagctaatagagtcgctcaaagtatagctagagcttctctatcacacactagccccca 33703688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 30840966 - 30841035
Alignment:
Q  70 tatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtactct 139  Q
    ||||||||||||| |||||||  | |||||| ||||||| |||| ||||| | |||| ||||||||||||    
T  30840966 tatagctagagctgccttatcatatcctagctcccatatctttagtgatgcacctgattacttgtactct 30841035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 39501136 - 39501221
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||| |||||||||||||||| || ||| | | ||| |||||||| ||  ||||||||||||||| |||||| ||| || |||||    
T  39501136 atgttaggaggcaagcaaatagagttgcttatagtattgctagagcatcactatctcaccctagcctccatatctttcatcatgta 39501221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 7386676 - 7386760
Alignment:
Q  37 tgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||| ||||||||||||||  || ||||| |  || |||||||| || |||||| | |||||||||||| ||||| ||||||||    
T  7386676 tgttccgaggcaagcaaataaagtagctcatagcattgctagagcctctttatctaatcctagcccccatgttttttatgatgta 7386760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 17813599 - 17813687
Alignment:
Q  47 caagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgta 135  Q
    |||||||||||||| ||| | |  ||| |||||||||||||||||||  |||||||| |  ||||| |||||||  |||| ||||||||    
T  17813599 caagcaaatagggtagcttataacataactagagcttccttatctcatgctagcccctaccttttttatgatgttcctgattacttgta 17813687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 33646007 - 33645908
Alignment:
Q  77 agagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtactctttgattattaatgaaatggcttaagtttggctttgct 176  Q
    |||||||||||||||||||||| |||| |||||||  |||||||| | || |||||||||||||| || |||||||||||| | |||||||| |||||||    
T  33646007 agagcttccttatctcaccctatccccaatattttatatgatgtacccgattacttgtactctttaatcattaatgaaatgacctaagtttgcctttgct 33645908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 10813212 - 10813139
Alignment:
Q  39 ttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatattttt 112  Q
    ||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| |||||||||||| |||||    
T  10813212 ttcggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttt 10813139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 177
Target Start/End: Complemental strand, 6292525 - 6292385
Alignment:
Q  37 tgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtac 136  Q
    |||| ||||||||||||||  ||| |||||  | ||||| ||||| ||||||||| |||||||||||||| ||||  |||||||||||    ||||||||    
T  6292525 tgttaggaggcaagcaaatgaggttgctcattccatagcaagagcatccttatctaaccctagcccccatgttttctatgatgtatcttctcacttgtac 6292426  T
Q  137 tctttgattattaatgaaatggcttaagtttggctttgctc 177  Q
    ||||||||   |||||||||||| |||| ||| ||||||||    
T  6292425 tctttgatatctaatgaaatggcctaagcttgcctttgctc 6292385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 23151280 - 23151366
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtat 122  Q
    ||||| |||||||||||||||| || ||||| | ||| ||| |||||||  ||||||| |||||||||||||||||| || ||||||    
T  23151280 atgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtat 23151366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 28499187 - 28499273
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtat 122  Q
    ||||| |||||||||||||||| || ||||| | ||| ||| |||||||  ||||||| |||||||||||||||||| || ||||||    
T  28499187 atgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtat 28499273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 29292921 - 29293061
Alignment:
Q  37 tgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtac 136  Q
    |||| ||||||||||||||  ||| |||||  | ||||| ||||| ||||| ||| |||||||||||||| | ||  |||||||||||    | ||||||    
T  29292921 tgttaggaggcaagcaaatgaggttgctcattccatagcaagagcatccttgtctaaccctagcccccatgtcttatatgatgtatcttctcatttgtac 29293020  T
Q  137 tctttgattattaatgaaatggcttaagtttggctttgctc 177  Q
    ||||||||   |||||||||||| |||| ||| ||||||||    
T  29293021 tctttgatatctaatgaaatggcctaagcttgcctttgctc 29293061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 3722730 - 3722850
Alignment:
Q  44 aggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtactctttga 143  Q
    ||||||||||||| ||| |||||| ||||||||||||| ||  ||||||||  ||||||  |||| ||| |||||||| |  | || || || ||||| |    
T  3722730 aggcaagcaaatatggttgctcactctatagctagagcatctctatctcacgttagcccatatatatttgatgatgtaccataatatttatattctttaa 3722829  T
Q  144 ttattaatgaaatggcttaag 164  Q
    |||  ||||||||||||||||    
T  3722830 ttacgaatgaaatggcttaag 3722850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 13020990 - 13020906
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgt 120  Q
    ||||||||||||||||||||| ||| ||| | | ||| |||||||| ||||||||  | |||| ||||||||||||  |||||||    
T  13020990 atgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtccttatccaatcctaacccccatattttctatgatgt 13020906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 24010453 - 24010363
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactactt 132  Q
    ||||||||||||| ||||| ||||| |  ||||||||| ||||||||||||| |||| |||| |  ||||  |||||||| || |||||||    
T  24010453 ggaggcaagcaaacagggtagctcataacatagctagaacttccttatctcatcctaacccctaccttttctatgatgtacctaactactt 24010363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 13092514 - 13092430
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgt 120  Q
    ||||||||||||||||||||| ||| ||| | | ||| |||||||| || |||||  | |||| ||||||||||||  |||||||    
T  13092514 atgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtcgttatccaatcctaacccccatattttctatgatgt 13092430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 31802476 - 31802603
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactac-ttgt 134  Q
    |||||||||||||||| |||| ||| ||||| | ||| |||||||||||||||| ||| ||||||| |||||| ||||||| |||  ||  |||| ||||    
T  31802476 atgttcggaggcaagctaataaggttgctcatagtattgctagagcttccttatgtcatcctagcctccatatatttaatgttgtgcct-tctactttgt 31802574  T
Q  135 actctttgattattaatgaaatggcttaa 163  Q
    |||| || |||||||||| ||||||||||    
T  31802575 actccttaattattaatggaatggcttaa 31802603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 18221532 - 18221454
Alignment:
Q  43 gaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||||||| |||| ||| ||||| ||||| |||||||| ||||||||||||||||||||| ||| ||| |||||||||    
T  18221532 gaggcaagctaataaggttgctcatactattgctagagcatccttatctcaccctagcccctatactttcaatgatgta 18221454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 513863 - 513948
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||| |||||||||| |||||||| ||||| | ||| |||||||||||||||| ||| |||| || |||||||||||||| ||||    
T  513863 atgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctaacctccatatttttaatgttgta 513948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 34762752 - 34762683
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttt 111  Q
    |||| |||||||||| ||| ||||| |  |||||||||||||||||||| ||||||||||||||||||||    
T  34762752 ggagacaagcaaataaggtagctcataacatagctagagcttccttatcccaccctagcccccatatttt 34762683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 24733605 - 24733510
Alignment:
Q  73 agctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtactctttgattattaatgaaatggcttaagtttg 168  Q
    |||||||| |||||||||||| |||||||||  ||| ||| |||||||| |     ||||||||||||||||||| ||||||||||| ||||||||    
T  24733605 agctagagtttccttatctcatcctagcccctttatctttcatgatgtaccctctgacttgtactctttgattatcaatgaaatggcataagtttg 24733510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 31403829 - 31403904
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatga 117  Q
    |||| ||| |||||||||| ||||| |  ||||||||||||| ||||||||||||||||| |||||||||| ||||    
T  31403829 ggagacaaacaaatagggtagctcataacatagctagagctttcttatctcaccctagcctccatatttttcatga 31403904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 19720468 - 19720538
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatattttt 112  Q
    ||||||||||||||||||| |||||||| |||  ||||| ||||||||| || ||||||||||| ||||||    
T  19720468 ggaggcaagcaaatagggttgctcacaccataattagagtttccttatcacaacctagcccccacattttt 19720538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 27745793 - 27745715
Alignment:
Q  43 gaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    |||| |||| |||| ||| ||||| | ||| |||||||| ||||||||||||||||||||| || ||||||||||||||    
T  27745793 gaggtaagctaataaggttgctcatagtatcgctagagcatccttatctcaccctagcccctatgtttttaatgatgta 27745715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 41147765 - 41147851
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtat 122  Q
    ||||| |||||||||||||||| || ||||| | ||| ||| |||||||  ||||||| |||||||||||||||||| || ||||||    
T  41147765 atgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtat 41147851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 42562037 - 42562151
Alignment:
Q  43 gaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtactctttg 142  Q
    |||||||||||||| ||| | |||  ||||| | ||||| ||||||||| | | || ||||||||||||| |||||||| |    |||||||||||||||    
T  42562037 gaggcaagcaaataaggttgttcattctataaccagagcatccttatctaatcttaacccccatattttttatgatgtaccctcttacttgtactctttg 42562136  T
Q  143 attattaatgaaatg 157  Q
    ||||||||| |||||    
T  42562137 attattaataaaatg 42562151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 43970053 - 43970138
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||||| ||||||||||||| ||| ||||| | ||| |||||||| ||||||||  | |||||||||||||||||  ||||||||    
T  43970053 atgttcgtaggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccccatattttctatgatgta 43970138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 34764095 - 34764163
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttt 111  Q
    |||| |||||||||| ||| ||||| |  |||||||||||||||||||| || |||||||||||||||||    
T  34764095 ggagtcaagcaaataaggtagctcataacatagctagagcttccttatccca-cctagcccccatatttt 34764163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 12350806 - 12350720
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtat 122  Q
    ||||| |||||||||||||||  || ||||| | ||| ||| |||||||  ||||||| |||| ||||||||||||| || ||||||    
T  12350806 atgttaggaggcaagcaaatattgttgctcatagtattgctcgagcttcgctatctcatcctatcccccatatttttcatcatgtat 12350720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 236719 - 236641
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||||||||||||| ||| ||||| |  |||||||||||||||||||| || |||||||||||||||||  ||||||||    
T  236719 ggaggcaagcaaataaggtagctcataacatagctagagcttccttatccca-cctagcccccatattttctatgatgta 236641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 2618731 - 2618681
Alignment:
Q  43 gaggcaagcaaatagggtcgctcacactatagctagagcttccttatctca 93  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  2618731 gaggcaagcaaatagggtagctcaaaatatagctagagcttccttatctca 2618681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 49816068 - 49816162
Alignment:
Q  83 tccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtactctttgattattaatgaaatggcttaagtttggctttgctc 177  Q
    |||||||| |||||||||||| |||| ||| || ||||  ||||||| ||||||||| | ||||| ||||||||||| ||||| || ||||||||    
T  49816068 tccttatcccaccctagcccctatatctttgattatgttcctgactatttgtactctctaattatcaatgaaatggcctaagtgtgcctttgctc 49816162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 52964214 - 52964144
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatattttt 112  Q
    |||||||||  |||||||| ||||| | |||||||||| ||||||||||||| |||||||||||| |||||    
T  52964214 ggaggcaagttaatagggttgctcatagtatagctagatcttccttatctcatcctagcccccatcttttt 52964144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 54548391 - 54548321
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatattttt 112  Q
    |||||||||  ||||| || ||||| | |||||||||||||||||||||||| |||||||||||| |||||    
T  54548391 ggaggcaagttaatagagttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttt 54548321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 19671254 - 19671303
Alignment:
Q  71 atagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||||||    
T  19671254 atagctagagcttccttatcccaccctag-ccccatatttttcatgatgta 19671303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 2497168 - 2497091
Alignment:
Q  45 ggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtat 122  Q
    ||||||||||||| || ||||| | ||| ||| |||||||  ||||||| |||||||||||||||||| || ||||||    
T  2497168 ggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtat 2497091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 20537710 - 20537779
Alignment:
Q  37 tgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccat 106  Q
    |||| ||||||||||||||| ||| ||||| |  |||||||||| | ||||||| |||||||||||||||    
T  20537710 tgtttggaggcaagcaaataaggtagctcataagatagctagagttgccttatcacaccctagcccccat 20537779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 11593961 - 11593923
Alignment:
Q  73 agctagagcttccttatctcaccctagcccccatatttt 111  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  11593961 agctagagcttacttatctcaccctagtccccatatttt 11593923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 51140237 - 51140119
Alignment:
Q  39 ttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtatctgactacttgtactc 138  Q
    |||||| |||||| |||||||| || || |  ||||||||||| |||||||  || |||||||||||||| ||| ||  |||||| ||  |  |||||||    
T  51140237 ttcggaagcaagcgaatagggttgcacatagcatagctagagcatccttatgccatcctagcccccatatcttttatattgtatcagatgatctgtactc 51140138  T
Q  139 tttgattattaatgaaatg 157  Q
    | | |||||||||||||||    
T  51140137 tataattattaatgaaatg 51140119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 29210927 - 29210843
Alignment:
Q  37 tgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgta 121  Q
    ||||||||||||||||||||  ||  |||| |  || |||||||| || |||||| | |||| ||||||||||||| ||||||||    
T  29210927 tgttcggaggcaagcaaataaagtaactcatagcattgctagagcctctttatctaatcctaacccccatattttttatgatgta 29210843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 11054 - 10968
Alignment:
Q  36 atgttcggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttttaatgatgtat 122  Q
    ||||| |||||||||||||||| || ||||  | ||| ||| |||||||  ||||||| |||||||||||||||||| || ||||||    
T  11054 atgttaggaggcaagcaaatagtgttgctcgtagtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtat 10968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0839 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 4699 - 4630
Alignment:
Q  42 ggaggcaagcaaatagggtcgctcacactatagctagagcttccttatctcaccctagcccccatatttt 111  Q
    |||| |||||||||| | | ||||| |  |||||||||||||||||||| ||||||| ||||||||||||    
T  4699 ggagacaagcaaataagttagctcataacatagctagagcttccttatcccaccctaacccccatatttt 4630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University