View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18213_high_3 (Length: 536)
Name: NF18213_high_3
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18213_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Original strand, 37635377 - 37635872
Alignment:
| Q |
19 |
atggaggatggggccaagccaataatctcttcacactagtagtaggagcataaccatctgaatcaaaagactacatgaacatatttcatcaacgttgaga |
118 |
Q |
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| T |
37635377 |
atggaggatggggccaaaccaataatctcttcacactagtagtaggagcataaccatctgaatcaaaagactacatgaacatatttcatcaacgttgaga |
37635476 |
T |
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| Q |
119 |
tttgagaaataatatattgaattggatgcttgatgttatnnnnnnnnnntaaccttgttcctaaaatcccaaattttccaaagaataatgacaatgatca |
218 |
Q |
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| T |
37635477 |
tttgagaaataatatcttgaattggatgcttgatgttataaaaaaaa--taaccttgttcctaaaatcccaaattttccaaagaataatgacaatgatca |
37635574 |
T |
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| Q |
219 |
cactatgactatcaataatattactcgatcaatatgttaaattcaaaccatcgtgaggagggatcgaagaaagtggacaaaccttcaaccaaacctccat |
318 |
Q |
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| T |
37635575 |
cactatgactatcaataacattactcgatcaatatgttaaattcaaaccatcgtgaggagggatcgaagaaagtggacaaaccttcaaccaaacctccat |
37635674 |
T |
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| Q |
319 |
ggcttttcccaattttccctatcaagatcacaaatcgggtaggtattattctaaagtaaacttgatagttataggcgtgagggggtgtatttgtgacaaa |
418 |
Q |
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| T |
37635675 |
atcttttcccaattttccctatcaagataacaaatcgggtaggtattattctaaagtaaacttgatagttataggcgtgagggggtgtatttgtgacaga |
37635774 |
T |
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| Q |
419 |
gaacaatannnnnnnnnnnnnnngcaaacatacgtcaaattgcaacacacatcatacaacatataatgaaagtataatatgttgtaattataagatta |
516 |
Q |
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| T |
37635775 |
gaacaatattttttattttttttgcaaacatacgtcaaattgcaacacacatcatacaacatataatgaaagtataatatgttgtaattataagatta |
37635872 |
T |
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