View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18213_high_7 (Length: 461)

Name: NF18213_high_7
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18213_high_7
NF18213_high_7
[»] chr6 (15 HSPs)
chr6 (1-442)||(6395241-6395682)
chr6 (51-264)||(14821138-14821351)
chr6 (24-184)||(6399658-6399818)
chr6 (25-350)||(6426912-6427234)
chr6 (299-412)||(14809701-14809817)
chr6 (298-361)||(6423906-6423969)
chr6 (51-110)||(8913661-8913720)
chr6 (309-363)||(6410707-6410761)
chr6 (305-363)||(19633108-19633166)
chr6 (51-102)||(6596546-6596597)
chr6 (305-352)||(6602726-6602773)
chr6 (313-363)||(10579088-10579138)
chr6 (299-352)||(6417094-6417147)
chr6 (310-351)||(9412137-9412178)
chr6 (299-363)||(6596225-6596289)
[»] chr1 (9 HSPs)
chr1 (51-168)||(29691002-29691119)
chr1 (51-168)||(29718514-29718631)
chr1 (51-168)||(29658487-29658604)
chr1 (41-110)||(33160945-33161014)
chr1 (51-110)||(52093225-52093284)
chr1 (299-361)||(19467423-19467485)
chr1 (51-161)||(30827546-30827656)
chr1 (299-347)||(7555200-7555248)
chr1 (375-407)||(33161279-33161311)
[»] chr7 (5 HSPs)
chr7 (24-142)||(15091714-15091832)
chr7 (299-438)||(15091511-15091653)
chr7 (299-361)||(10615715-10615777)
chr7 (299-361)||(10169042-10169104)
chr7 (299-361)||(10176567-10176629)
[»] chr5 (1 HSPs)
chr5 (293-352)||(20477441-20477500)
[»] chr8 (3 HSPs)
chr8 (299-361)||(17642927-17642989)
chr8 (299-344)||(32151970-32152015)
chr8 (299-352)||(17635657-17635710)
[»] chr4 (7 HSPs)
chr4 (305-351)||(7225163-7225209)
chr4 (305-361)||(553767-553823)
chr4 (299-342)||(3437631-3437674)
chr4 (305-350)||(1755561-1755606)
chr4 (297-352)||(661858-661913)
chr4 (299-337)||(571332-571370)
chr4 (297-361)||(2621400-2621464)
[»] chr2 (2 HSPs)
chr2 (297-352)||(45244849-45244904)
chr2 (299-342)||(1036622-1036665)
[»] chr3 (3 HSPs)
chr3 (54-110)||(514317-514373)
chr3 (299-361)||(51113189-51113251)
chr3 (42-102)||(51764046-51764106)


Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 6395241 - 6395682
Alignment:
Q  1 cagtttctaacgagtgnnnnnnnggttgtttctgtgagataacaaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacat 100  Q
    ||||||||||||||||       |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6395241 cagtttctaacgagtgaaaaaaaggttgtttctgtgagataaccaccacaaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacat 6395340  T
Q  101 gttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagttagtctgatt 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6395341 gttgatcatttagactagtaatgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagttagtctgatt 6395440  T
Q  201 gtcataggtgaccaaagggaaatagatgatgagttttgtgagcaaagggaaacaatcaacaatatctgtcagactgttctcgaaaaaataaacacagtaa 300  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6395441 gtcataggcgaccaaagggaaatagatgatgagttttgtgagcaaagggaaacaatcaacaatgtctgtcagactgttctcgaaaaaataaacacagtaa 6395540  T
Q  301 caactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaagtagcattcgtcgagtttgagtgatgtgagtttcaatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6395541 caactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaagtagcattcgtcgagtttgagtgatgtgagtttcaatg 6395640  T
Q  401 ggaaatttgagagttggttgagaagatcgtcaaggttgcggt 442  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6395641 ggaaatttgagagttggttgagaagatcgtcaaggttgcggt 6395682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 51 - 264
Target Start/End: Original strand, 14821138 - 14821351
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 150  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||| ||  | ||     ||||||||||||||||||||||    
T  14821138 aaggtttatagataccaaattaccaagacacaaacaaaaatcaacaacatgttgattatttagaaaataagtgctttgaagttccaaatgttgtatacat 14821237  T
Q  151 ggagacttggatagcagacggtgaattgtattaacgaagttagtctgattgtcataggtgaccaaagggaaatagatgatgagttttgtgagcaaaggga 250  Q
    ||||||||||||| |||||| ||||||||| |||| |||||||||| |||||  | || ||||  ||||  | ||||| |||||| | |||||||||| |    
T  14821238 ggagacttggataacagacgttgaattgtactaacaaagttagtctcattgttcttggggaccttagggcgacagatgttgagttctttgagcaaaggaa 14821337  T
Q  251 aacaatcaacaata 264  Q
    ||||||||||||||    
T  14821338 aacaatcaacaata 14821351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 6399658 - 6399818
Alignment:
Q  24 ggttgtttctgtgagataacaac---cataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagta 120  Q
    |||||||||||||||||||||||   ||  |||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||   ||  |    
T  6399658 ggttgtttctgtgagataacaacaagcaccaaggtttacagacaccaaattactaagaaacacagagaaatcaacaacatgttgatcattta---aatca 6399754  T
Q  121 atgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaa 184  Q
     ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  6399755 gtgttacaaagttccaaatattgtatacatggagacttggataacagacggtgaattgtattaa 6399818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 350
Target Start/End: Original strand, 6426912 - 6427234
Alignment:
Q  25 gttgtttctgtgagataa---caaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaa 121  Q
    |||||||||||||||| |   ||||||  |||||||||||| ||||| ||||||| ||||||| | |  ||| ||||| |||||||  ||||| ||| |     
T  6426912 gttgtttctgtgagatgatgacaaccactaaggtttatagacaccaacttaccaaaaaacaaacacatctcatcaacaagttgatcggttagaaaagaag 6427011  T
Q  122 tgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagttagtctgattgtcataggtgaccaaagggaa 221  Q
    |   || ||||||||||||||||||||||||| ||||||||| || || |||||||| ||||| |||||||| || |||      | |||||||||||      
T  6427012 tactacgaagttccaaatgttgtatacatggacacttggataacatacagtgaattgaattaatgaagttaggcttatt------gatgaccaaagggtg 6427105  T
Q  222 atagatgatgagttttgtgagcaaagggaaacaatcaacaatatctgtcagactgttctcgaaaaaataaacacagtaacaactgagagaggtcaaagtt 321  Q
    || || | |||||| | |||||||||||||||||||||||||   || ||||  ||| |   | ||| ||  || ||||||| ||||| |||||||||||    
T  6427106 atggaggttgagttgtttgagcaaagggaaacaatcaacaatgggtgacagatcgttgttacagaaaaaagtaccgtaacaagtgagaaaggtcaaagtt 6427205  T
Q  322 gtaatattttgggagagagcttgcaaccc 350  Q
    |||||||||||||||| | ||||||||||    
T  6427206 gtaatattttgggagaaaacttgcaaccc 6427234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 412
Target Start/End: Original strand, 14809701 - 14809817
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaagtagcat---tcgtcgagtttgagtgatgtgagttt 395  Q
    ||||| ||||||||| |||||||||||| |||||||||| | |||||||||| | || |||||||  ||||   | |  |||||| || |||||||||||    
T  14809701 aacaagtgagagaggccaaagttgtaatgttttgggagaaatcttgcaacccttttgcgggaaaggtgcatgtcttggggagttttagggatgtgagttt 14809800  T
Q  396 caatgggaaatttgaga 412  Q
    |||||||||||||||||    
T  14809801 caatgggaaatttgaga 14809817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 6423906 - 6423969
Alignment:
Q  298 taacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaa 361  Q
    |||||| ||||||||||||||||||| || |||||||||| |||| ||||||||| ||||||||    
T  6423906 taacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttgtgggaa 6423969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 8913720 - 8913661
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 110  Q
    |||||||||||| ||||||||||||||||||||||| || |  |||||||||||||||||    
T  8913720 aaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcatt 8913661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 6410707 - 6410761
Alignment:
Q  309 agaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaag 363  Q
    |||||||||||||||||| |||||||||| | |||||||||||| | ||||||||    
T  6410707 agaggtcaaagttgtaatgttttgggagaaaacttgcaacccatttatgggaaag 6410761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 19633108 - 19633166
Alignment:
Q  305 tgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaag 363  Q
    ||||||||||||||||||||||  ||| ||||| |||| ||||||||| ||||||||||    
T  19633108 tgagagaggtcaaagttgtaatgctttcggagaaagctcgcaacccatttgtgggaaag 19633166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 6596597 - 6596546
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgt 102  Q
    |||||||||||| ||||||| ||||||||||||||||||  || ||||||||    
T  6596597 aaggtttatagaaaccaaatcaccaagaaacaaagagaacccagcaacatgt 6596546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 6602773 - 6602726
Alignment:
Q  305 tgagagaggtcaaagttgtaatattttgggagagagcttgcaacccat 352  Q
    |||||||||||||||| ||||| ||||| |||| ||||||||||||||    
T  6602773 tgagagaggtcaaagtagtaatcttttgagagaaagcttgcaacccat 6602726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 10579138 - 10579088
Alignment:
Q  313 gtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaag 363  Q
    ||||||||||| || |||||||||| |||| | ||||||||||||||||||    
T  10579138 gtcaaagttgttatgttttgggagaaagctcgtaacccatctgtgggaaag 10579088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 6417094 - 6417147
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccat 352  Q
    ||||| |||||||||||||||||||| | |||||||||| |||| | |||||||    
T  6417094 aacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccat 6417147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 9412137 - 9412178
Alignment:
Q  310 gaggtcaaagttgtaatattttgggagagagcttgcaaccca 351  Q
    ||||| |||||||||||||||||||||| |||| ||||||||    
T  9412137 gaggttaaagttgtaatattttgggagaaagctcgcaaccca 9412178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 6596289 - 6596225
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaag 363  Q
    ||||| ||||||||||||||||||| || |||||||||| | || ||||||| || | |||||||    
T  6596289 aacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaacccgtcagcgggaaag 6596225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 29691119 - 29691002
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 150  Q
    |||||||||||| ||||||| | |||||||||||||||| ||  |||||||||||||||| ||| || || |||||| ||| ||||||||||||||| ||    
T  29691119 aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatat 29691020  T
Q  151 ggagacttggatagcaga 168  Q
    ||||| ||||||| ||||    
T  29691019 ggagagttggataacaga 29691002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 29718631 - 29718514
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 150  Q
    |||||||||||| ||||||| | |||||||||||||||| ||  |||||||||||||||| ||| || || |||||| ||| ||||||||||||||| ||    
T  29718631 aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatat 29718532  T
Q  151 ggagacttggatagcaga 168  Q
    ||||| ||||||| ||||    
T  29718531 ggagagttggataacaga 29718514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 29658604 - 29658487
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 150  Q
    |||||||||||| ||||||| | |||||||||||||||| ||  |||||||||||||||| ||| |  || || ||| ||| ||||||||||||||| |     
T  29658604 aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaacttagtgcgactaagatccaaatgttgtatatac 29658505  T
Q  151 ggagacttggatagcaga 168  Q
    ||||| ||||||| ||||    
T  29658504 ggagagttggataacaga 29658487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 33160945 - 33161014
Alignment:
Q  41 aacaaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 110  Q
    |||| |||| |||||||||||| ||||||  | |||||||||||||||| ||  ||||||||||||||||    
T  33160945 aacatccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcatt 33161014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 52093225 - 52093284
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 110  Q
    |||||||||||| |||||||||||||||| |||||| ||  |||||| || |||||||||    
T  52093225 aaggtttatagacaccaaattaccaagaaccaaagacaacccaacaatatcttgatcatt 52093284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 19467485 - 19467423
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaa 361  Q
    ||||| |||||||||||||||||||||||||||| | || | || ||||||||| || |||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgcgggaa 19467423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 30827546 - 30827656
Alignment:
Q  51 aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat 150  Q
    |||||||||||| || |||| |  ||||| ||||||||| ||  |||||||||||||||| ||| ||  | ||  || ||| ||||||||||||||| ||    
T  30827546 aaggtttatagacactaaatgaggaagaagcaaagagaagtcggcaacatgttgatcattgagaaaacaagtgaaactaagatccaaatgttgtatatat 30827645  T
Q  151 ggagacttgga 161  Q
    ||||| |||||    
T  30827646 ggagagttgga 30827656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 7555200 - 7555248
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaa 347  Q
    ||||| |||| ||||| |||||||||||||||||||||| |||| ||||    
T  7555200 aacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaa 7555248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Original strand, 33161279 - 33161311
Alignment:
Q  375 gagtttgagtgatgtgagtttcaatgggaaatt 407  Q
    |||||||||||||| ||||||||||||||||||    
T  33161279 gagtttgagtgatgagagtttcaatgggaaatt 33161311  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 15091832 - 15091714
Alignment:
Q  24 ggttgtttctgtgagataacaac---cataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagta 120  Q
    ||||||||||||||||| || ||   ||| |||||||||||| |||||||||| |||||| | |||||||||||||||||||||||||||   | || ||    
T  15091832 ggttgtttctgtgagattacgacaagcattaaggtttatagacaccaaattactaagaaatagagagaaatcaacaacatgttgatcatt---aaaacta 15091736  T
Q  121 atgtgacaaagttccaaatgtt 142  Q
     ||| |||||||||||||||||    
T  15091735 gtgttacaaagttccaaatgtt 15091714  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 438
Target Start/End: Complemental strand, 15091653 - 15091511
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaagtagcattcgtc---gagtttgagtgatgtgagttt 395  Q
    ||||| |||||||| |||||||||||||| ||||  ||| | |||||||||||| ||  ||||||  |||| ||     ||||||||||||| |||||||    
T  15091653 aacaagtgagagagttcaaagttgtaatagtttgcaagaaaacttgcaacccatatgcaggaaagcggcatccgaatgggagtttgagtgatttgagttt 15091554  T
Q  396 caatgggaaatttgagagttggttgagaagatcgtcaaggttg 438  Q
    |||||||||| |||||| |||   |||||||||||||||||||    
T  15091553 caatgggaaaattgagatttgacagagaagatcgtcaaggttg 15091511  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 10615715 - 10615777
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaa 361  Q
    ||||| |||||||||||||||||||||| |||||||||| |||| | ||||||| || |||||    
T  10615715 aacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaa 10615777  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 10169104 - 10169042
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaa 361  Q
    ||||| ||||||||||||||||| |||||||||| |||| | || ||||||||| || |||||    
T  10169104 aacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaa 10169042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 10176629 - 10176567
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaa 361  Q
    ||||| ||||||||||||||||| |||||||||| |||| | || ||||||||| || |||||    
T  10176629 aacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaa 10176567  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 20477500 - 20477441
Alignment:
Q  293 cacagtaacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccat 352  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||  || ||||||||||    
T  20477500 cacaggaacaactgagagaggtcaaagttttaatattttgggagaatgcatgcaacccat 20477441  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 17642989 - 17642927
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaa 361  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||  |||||||    
T  17642989 aacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaa 17642927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 32151970 - 32152015
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttg 344  Q
    ||||| |||||||||||||||||||||| |||||||||| ||||||    
T  32151970 aacaagtgagagaggtcaaagttgtaatgttttgggagaaagcttg 32152015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 17635710 - 17635657
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccat 352  Q
    ||||| |||||||||||||||||||||||||  |||||| |||| | |||||||    
T  17635710 aacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccat 17635657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 7225209 - 7225163
Alignment:
Q  305 tgagagaggtcaaagttgtaatattttgggagagagcttgcaaccca 351  Q
    |||||||||||||||||||||||||||| || |||||||||||||||    
T  7225209 tgagagaggtcaaagttgtaatattttgagaaagagcttgcaaccca 7225163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 553767 - 553823
Alignment:
Q  305 tgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaa 361  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||||| || |||||    
T  553767 tgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaa 553823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 3437674 - 3437631
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagct 342  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  3437674 aacaactgagagaggtcaaagttgtaatcttttgggagaaagct 3437631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 1755561 - 1755606
Alignment:
Q  305 tgagagaggtcaaagttgtaatattttgggagagagcttgcaaccc 350  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||    
T  1755561 tgagagaggtcaaagttgtaatcttttgagagaaagcttgcaaccc 1755606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 661858 - 661913
Alignment:
Q  297 gtaacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccat 352  Q
    ||||||| |||||||||| ||||||||||||| |||||||| |||| |||| ||||    
T  661858 gtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccat 661913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 571332 - 571370
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggaga 337  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  571332 aacaattgagagatgtcaaagttgtaatattttgggaga 571370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 2621464 - 2621400
Alignment:
Q  297 gtaacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaa 361  Q
    ||||||| ||||||| |||||| || | ||||||| ||||| |||| ||||||||||||| ||||    
T  2621464 gtaacaagtgagagatgtcaaatttttcatatttttggagaaagctcgcaacccatctgtaggaa 2621400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 45244904 - 45244849
Alignment:
Q  297 gtaacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccat 352  Q
    ||||||| |||||||||||||| || ||||| ||||||||| ||||||||||||||    
T  45244904 gtaacaaatgagagaggtcaaatttctaatagtttgggagaaagcttgcaacccat 45244849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 1036665 - 1036622
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagct 342  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||    
T  1036665 aacaaatgagagaagtcaaagttgtaatattttgggagaaagct 1036622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 514373 - 514317
Alignment:
Q  54 gtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt 110  Q
    ||||||||| | ||||| |||||||||||| || ||||| |||||||||||||||||    
T  514373 gtttatagacaacaaatgaccaagaaacaatgacaaatccacaacatgttgatcatt 514317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 51113251 - 51113189
Alignment:
Q  299 aacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaa 361  Q
    ||||| |||||||||||| ||||||||||||||  |||| |||| |||| |||| ||||||||    
T  51113251 aacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttgtgggaa 51113189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 51764106 - 51764046
Alignment:
Q  42 acaaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgt 102  Q
    |||||||  ||||||||| || |||||||||| |||||||||||| ||||  |||||||||    
T  51764106 acaaccactaaggtttatggacaccaaattactaagaaacaaagacaaatttacaacatgt 51764046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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