View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18213_low_1 (Length: 1100)

Name: NF18213_low_1
Description: NF18213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18213_low_1
NF18213_low_1
[»] chr7 (11 HSPs)
chr7 (16-1094)||(24047820-24048900)
chr7 (817-889)||(1418502-1418574)
chr7 (845-885)||(19302482-19302522)
chr7 (848-885)||(30134246-30134283)
chr7 (848-885)||(34036031-34036068)
chr7 (841-884)||(7513666-7513709)
chr7 (815-874)||(14823799-14823858)
chr7 (815-874)||(15270806-15270865)
chr7 (846-885)||(30748953-30748992)
chr7 (761-885)||(41040190-41040316)
chr7 (827-872)||(8427106-8427151)
[»] chr3 (17 HSPs)
chr3 (817-874)||(2923561-2923618)
chr3 (793-885)||(21872214-21872308)
chr3 (819-885)||(30657371-30657437)
chr3 (776-873)||(24624250-24624349)
chr3 (818-862)||(26542621-26542665)
chr3 (814-886)||(45590731-45590803)
chr3 (815-874)||(31403440-31403499)
chr3 (815-886)||(50211816-50211887)
chr3 (827-885)||(11253594-11253652)
chr3 (816-878)||(25129960-25130022)
chr3 (828-873)||(22667497-22667542)
chr3 (828-873)||(22724136-22724181)
chr3 (816-873)||(24158447-24158504)
chr3 (845-886)||(24684740-24684781)
chr3 (815-872)||(26330255-26330312)
chr3 (848-885)||(26990144-26990181)
chr3 (845-874)||(34610736-34610765)
[»] chr4 (14 HSPs)
chr4 (818-878)||(21157852-21157912)
chr4 (663-802)||(54325041-54325181)
chr4 (815-871)||(8328052-8328108)
chr4 (845-885)||(17822784-17822824)
chr4 (815-871)||(18628486-18628542)
chr4 (845-885)||(27043749-27043789)
chr4 (793-874)||(27725271-27725354)
chr4 (790-881)||(50298570-50298662)
chr4 (850-885)||(1133044-1133079)
chr4 (818-873)||(28615608-28615663)
chr4 (841-883)||(20656146-20656188)
chr4 (817-874)||(1017111-1017168)
chr4 (828-885)||(2811565-2811622)
chr4 (841-874)||(33534099-33534132)
[»] chr8 (10 HSPs)
chr8 (819-885)||(11059648-11059714)
chr8 (815-874)||(2364390-2364449)
chr8 (701-883)||(12361156-12361343)
chr8 (845-885)||(38602438-38602478)
chr8 (818-869)||(25881350-25881401)
chr8 (852-886)||(7711969-7712003)
chr8 (673-743)||(10114426-10114496)
chr8 (816-870)||(24326113-24326167)
chr8 (814-883)||(1821909-1821978)
chr8 (814-883)||(1856354-1856423)
[»] chr1 (13 HSPs)
chr1 (737-886)||(6292494-6292644)
chr1 (815-883)||(7252541-7252609)
chr1 (829-873)||(28837284-28837328)
chr1 (818-885)||(12564418-12564485)
chr1 (816-883)||(17009503-17009570)
chr1 (687-726)||(29794003-29794042)
chr1 (815-885)||(4276569-4276639)
chr1 (823-885)||(4622182-4622244)
chr1 (815-885)||(27807196-27807266)
chr1 (845-887)||(41505785-41505827)
chr1 (820-873)||(15581340-15581393)
chr1 (816-885)||(26866395-26866464)
chr1 (845-874)||(33204324-33204353)
[»] chr2 (15 HSPs)
chr2 (816-868)||(34927045-34927097)
chr2 (816-886)||(5759493-5759563)
chr2 (828-885)||(3973636-3973693)
chr2 (816-885)||(22878180-22878249)
chr2 (815-886)||(4350771-4350842)
chr2 (827-886)||(21279967-21280026)
chr2 (816-870)||(13864717-13864771)
chr2 (820-874)||(14277823-14277877)
chr2 (847-885)||(18525160-18525198)
chr2 (815-873)||(26548534-26548592)
chr2 (845-887)||(30331862-30331904)
chr2 (816-873)||(25609878-25609935)
chr2 (790-872)||(29430812-29430896)
chr2 (828-885)||(40077430-40077487)
chr2 (819-884)||(43456627-43456692)
[»] chr5 (10 HSPs)
chr5 (789-873)||(42646944-42647029)
chr5 (816-885)||(11297115-11297184)
chr5 (850-887)||(28578961-28578998)
chr5 (815-874)||(17498792-17498851)
chr5 (820-886)||(34975450-34975515)
chr5 (845-887)||(39594918-39594960)
chr5 (841-886)||(9711185-9711230)
chr5 (817-874)||(14980592-14980649)
chr5 (830-883)||(33961779-33961832)
chr5 (841-874)||(37968984-37969017)
[»] chr6 (8 HSPs)
chr6 (828-885)||(30536884-30536941)
chr6 (841-889)||(35070382-35070430)
chr6 (847-886)||(13908353-13908392)
chr6 (841-888)||(32916943-32916989)
chr6 (816-882)||(2455892-2455958)
chr6 (815-885)||(29249474-29249544)
chr6 (815-873)||(31774458-31774516)
chr6 (817-866)||(32976061-32976110)
[»] scaffold0024 (1 HSPs)
scaffold0024 (773-869)||(27613-27711)


Alignment Details
Target: chr7 (Bit Score: 941; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 941; E-Value: 0
Query Start/End: Original strand, 16 - 1094
Target Start/End: Original strand, 24047820 - 24048900
Alignment:
Q  16 aaagtctcaccaatttgatctccagtccgatttttaaaacactgtttaacacaa-taca-atgtaaattgcagcttggcacagaagaacaacgatgcatt 113  Q
    ||||||||||||||||||| ||||| || |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  24047820 aaagtctcaccaatttgatttccaggccaatttttaaaacattgtttaacacaaatacatatgtaaattgcagcttggcacagaagaacaacgatgcatt 24047919  T
Q  114 gtaaatgtgtgccaaccaggaagcaaccttctagcagctggttactgcatgtactctagctcagtaatctttgttctaacaatcggcaaaggagttttcg 213  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  24047920 gtgaatgtgtgccaaccaggaagcaaccttctagcagccggttactgcatgtattctagctcagtaatcttcgttctaacaatcggcaaaggagttttcg 24048019  T
Q  214 tattcacattagatccaatgtatggagaatttgttttgactcaagaaaatctccaaataccgaaatcagggaaaatatattctttcaatgaagggaatca 313  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| |    
T  24048020 tattcacattagatccaatgtatggggaatttgttttgactcaagaaaatctccaaataccaaaatcagggaaaatttattctttcaatgaaggaaatta 24048119  T
Q  314 caagttatgggatgacagccttaagaaatacattgatgatctcaaggaaccaggtgctaatggcaaaccttatttagcaaggtatattggtagtttggta 413  Q
    ||||||||||||||||| | | ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  24048120 caagttatgggatgacaacttgaagaaatacatcgatgatctcaaggaaccgggtgctaatggcaaaccttattcagcaaggtatattggtagtttggta 24048219  T
Q  414 ggtgatttccataggacactgctatatggtggcatttatggttaccctagggacaagaaaagtaagaatggaaagcttaggcttttatatgagtgtgctc 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24048220 ggtgatttccataggacactgctatatggtggcatttatggttaccctagggacaagaaaagtaagaatggaaagcttaggcttttatatgagtgtgctc 24048319  T
Q  514 caatgagtttcattgtagaacaggctggtggaaaaggttcagatggtcatcagagagtactcgacattcaacccaccgaagtaagtgttgaatgactttg 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  24048320 caatgagtttcattgtagaacaggctggtggaaaaggttcagatggtcatcagagagtacttgacattcaacccaccgaagtaagtgtcgaatgactttg 24048419  T
Q  614 accttgtttagataaactacttaattaagcgcttatagtttaggaaatcatcatacaactgcttatgtatgatctatttttgttacaaaagataaaataa 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24048420 accttgtttagataaactacttaattaagcgcttatagtttaggaaatcatcatacaactgcttatgtatgatctatttttgttacaaaagataaaataa 24048519  T
Q  714 gtcgaattgtttttgtataaacaataagctagtttcgtaagtaattttggagagtttagggaaataaactgaaatgagcttatggacatgacataagcta 813  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24048520 gtcgaattgtttttatataaacaataagctagtttcgtaagtaattttggagagtttagggaaataaactgaaatgagcttatggacatgacataagcta 24048619  T
Q  814 atcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaacaagtcttttacatgttactaaaagccacg 913  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24048620 atcataagctcttccaaacagtcttttaagtacttatgtcagtagataaactcaaataagtaaattcaaacaagtcttttacatgttactaaaagccacg 24048719  T
Q  914 gttttaaatcacgattacgatcacttttgtcataagccaaggtcgtactgtgatccttaaagttgcaaagaattgcagtcaaatgcgactttaacggtcg 1013  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  24048720 gttttaaatcacgattaggatcacttttgtcataagccaaggtcgtgctgtgatccttaaagttgcaaggaattgcagtcaaatgcgactttaacagtcg 24048819  T
Q  1014 cagcagaccaaaaattgtggctgcgtatcttctactaaaccatgataaaatatttactagtttatgataaatgtgatgatg 1094  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  24048820 cagaagaccaaaaattgtggctgcatatcttctactaaaccatgataaaatatttagtagtttatgataaatgttatgatg 24048900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 817 - 889
Target Start/End: Original strand, 1418502 - 1418574
Alignment:
Q  817 ataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaacaagtc 889  Q
    |||||||||  ||||||| ||  ||||| |||||| |||||||||||||||||||||| ||| ||||||||||    
T  1418502 ataagctctcacaaacagcctcataagtgcttatgccagtagataagctcaaataagtcaatccaaacaagtc 1418574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 845 - 885
Target Start/End: Complemental strand, 19302522 - 19302482
Alignment:
Q  845 acttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  19302522 acttatgtcagtagataagctcaaataagtcaattcaaaca 19302482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 848 - 885
Target Start/End: Original strand, 30134246 - 30134283
Alignment:
Q  848 tatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  30134246 tatgtcagtagataagctcaaataagttaattcaaaca 30134283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 848 - 885
Target Start/End: Original strand, 34036031 - 34036068
Alignment:
Q  848 tatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  34036031 tatgtcagtagataagctcaaataagtcaattcaaaca 34036068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 841 - 884
Target Start/End: Original strand, 7513666 - 7513709
Alignment:
Q  841 aagtacttatgtcagtagataagctcaaataagtaaattcaaac 884  Q
    |||| |||||| |||||||||||||||||||||| |||||||||    
T  7513666 aagtgcttatgccagtagataagctcaaataagtcaattcaaac 7513709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 815 - 874
Target Start/End: Complemental strand, 14823858 - 14823799
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagt 874  Q
    ||||||||||||| ||||| |||   ||||||||| |||| |||||||||||||||||||    
T  14823858 tcataagctcttcaaaacaatctcaaaagtacttaagtcattagataagctcaaataagt 14823799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 815 - 874
Target Start/End: Complemental strand, 15270865 - 15270806
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagt 874  Q
    ||||||||||||| ||||| |||   ||||||||| |||| |||||||||||||||||||    
T  15270865 tcataagctcttcaaaacaatctcaaaagtacttaagtcattagataagctcaaataagt 15270806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 846 - 885
Target Start/End: Complemental strand, 30748992 - 30748953
Alignment:
Q  846 cttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  30748992 cttatgtcagtagataagctcaaataactcaattcaaaca 30748953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 761 - 885
Target Start/End: Original strand, 41040190 - 41040316
Alignment:
Q  761 tggagagtttagggaaataaactgaaatgagcttatggacatgacataagctaat--cataagctcttccaaacagtcttttaagtacttatgtcagtag 858  Q
    ||||||||||| ||||||||||| | |  |||| ||||| ||| ||||||||  |  |||||||||||| ||| || ||   || ||||||| |||||||    
T  41040190 tggagagtttatggaaataaactcataacagctcatggatatgtcataagctgtttccataagctcttctaaagagcctcacaaatacttatatcagtag 41040289  T
Q  859 ataagctcaaataagtaaattcaaaca 885  Q
    |||| ||||||||| | ||||||||||    
T  41040290 ataaactcaaataaatcaattcaaaca 41040316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 827 - 872
Target Start/End: Original strand, 8427106 - 8427151
Alignment:
Q  827 ccaaacagtcttttaagtacttatgtcagtagataagctcaaataa 872  Q
    |||||||||||   |||||||||||| |||||||||||||||||||    
T  8427106 ccaaacagtctcacaagtacttatgttagtagataagctcaaataa 8427151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 817 - 874
Target Start/End: Original strand, 2923561 - 2923618
Alignment:
Q  817 ataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagt 874  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||    
T  2923561 ataagttcttccaaacagtctttcaagtacttatgtcaatagataagctcgaataagt 2923618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 793 - 885
Target Start/End: Complemental strand, 21872308 - 21872214
Alignment:
Q  793 ttatggacatgacataagctaat--cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||| ||||||||| |  || ||||| |||||||||||||   |||| |||||||||||||||||| |||||||||| ||| ||||||    
T  21872308 ttatggacatgtcataagctattttcaaaagcttttccaaacagtctcacaagtgcttatgtcagtagataagatcaaataagttaatccaaaca 21872214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 819 - 885
Target Start/End: Original strand, 30657371 - 30657437
Alignment:
Q  819 aagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||||||| |||   |||| ||||||||||||||||| ||||||||| | ||||||||||    
T  30657371 aagctcttccaaacaatctcaaaagtgcttatgtcagtagataaactcaaataaatcaattcaaaca 30657437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 873
Target Start/End: Original strand, 24624250 - 24624349
Alignment:
Q  776 aataaactgaaatgagcttatggacatgacataagctaat--cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataag 873  Q
    ||||| ||||||  || ||||||||||| ||||||||  |  |||||||||||||||||||||||  |||| || |||| |||||||||| |||| ||||    
T  24624250 aataagctgaaaacagtttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaactaag 24624349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 818 - 862
Target Start/End: Original strand, 26542621 - 26542665
Alignment:
Q  818 taagctcttccaaacagtcttttaagtacttatgtcagtagataa 862  Q
    |||||||||||||||||||||  |||||||||||| |||||||||    
T  26542621 taagctcttccaaacagtcttacaagtacttatgtgagtagataa 26542665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 814 - 886
Target Start/End: Original strand, 45590731 - 45590803
Alignment:
Q  814 atcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaacaa 886  Q
    |||||||||||| |||||||||||   |||| ||||||  |||||||||| ||||| |||| |||||||||||    
T  45590731 atcataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaattcaaacaa 45590803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 815 - 874
Target Start/End: Original strand, 31403440 - 31403499
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagt 874  Q
    ||||||| ||| ||||| ||||||  |||||||||||| ||||||||||||||| |||||    
T  31403440 tcataagttctcccaaatagtcttgcaagtacttatgttagtagataagctcaagtaagt 31403499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 815 - 886
Target Start/End: Original strand, 50211816 - 50211887
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaacaa 886  Q
    ||||||| |||  |||||||||||  |||| ||||||| |||||||||||| |||||||| ||| |||||||    
T  50211816 tcataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataagttaatccaaacaa 50211887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 827 - 885
Target Start/End: Original strand, 11253594 - 11253652
Alignment:
Q  827 ccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||| | |||| ||||||  ||||||||| ||||||||||| ||||||||||    
T  11253594 ccaaacagtctctcaagtgcttatgctagtagataatctcaaataagtcaattcaaaca 11253652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 878
Target Start/End: Original strand, 25129960 - 25130022
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaat 878  Q
    |||||||||||| |||||||||   |||||| |||||||||||||||| || ||||| |||||    
T  25129960 cataagctcttctaaacagtctcacaagtacatatgtcagtagataagttcgaataaataaat 25130022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 828 - 873
Target Start/End: Original strand, 22667497 - 22667542
Alignment:
Q  828 caaacagtcttttaagtacttatgtcagtagataagctcaaataag 873  Q
    ||||||||||   |||| ||||||||||||||||||||||||||||    
T  22667497 caaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22667542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 828 - 873
Target Start/End: Original strand, 22724136 - 22724181
Alignment:
Q  828 caaacagtcttttaagtacttatgtcagtagataagctcaaataag 873  Q
    ||||||||||   |||| ||||||||||||||||||||||||||||    
T  22724136 caaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22724181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 873
Target Start/End: Complemental strand, 24158504 - 24158447
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataag 873  Q
    ||||||||||  |||||||| |   ||||||||||||||||||||||||| |||||||    
T  24158504 cataagctctcgcaaacagtttcacaagtacttatgtcagtagataagcttaaataag 24158447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 845 - 886
Target Start/End: Complemental strand, 24684781 - 24684740
Alignment:
Q  845 acttatgtcagtagataagctcaaataagtaaattcaaacaa 886  Q
    ||||||| |||||||||||||||||||||| ||| |||||||    
T  24684781 acttatgccagtagataagctcaaataagttaatccaaacaa 24684740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 815 - 872
Target Start/End: Complemental strand, 26330312 - 26330255
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataa 872  Q
    ||||||||||||| |||||||||   || ||||||| ||||||||||| |||||||||    
T  26330312 tcataagctcttctaaacagtctcacaaatacttatttcagtagataacctcaaataa 26330255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 885
Target Start/End: Complemental strand, 26990181 - 26990144
Alignment:
Q  848 tatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  26990181 tatgtcagtagataagctcaaataagtcaatccaaaca 26990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 845 - 874
Target Start/End: Complemental strand, 34610765 - 34610736
Alignment:
Q  845 acttatgtcagtagataagctcaaataagt 874  Q
    ||||||||||||||||||||||||||||||    
T  34610765 acttatgtcagtagataagctcaaataagt 34610736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 818 - 878
Target Start/End: Original strand, 21157852 - 21157912
Alignment:
Q  818 taagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaat 878  Q
    |||||||||||||||||||||  |||| ||||||||||||||| |||||||||||| ||||    
T  21157852 taagctcttccaaacagtcttacaagtgcttatgtcagtagatgagctcaaataagcaaat 21157912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 663 - 802
Target Start/End: Complemental strand, 54325181 - 54325041
Alignment:
Q  663 atcatacaactgcttatgtatgatctatttttgttacaaaagataaaataa-gtcgaattgtttttgtataaacaataagctagtttcgtaagtaatttt 761  Q
    |||||| || ||||| ||||| | |||||| | |||||||||||||||||| ||| || ||||||  ||||| | |||||||| ||||  |||  ||  |    
T  54325181 atcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctattttcaaaagctatcat 54325082  T
Q  762 ggagagtttagggaaataaactgaaatgagcttatggacat 802  Q
    |||||||||| ||| |||||||||||  |||||||||||||    
T  54325081 ggagagtttatggagataaactgaaaacagcttatggacat 54325041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 815 - 871
Target Start/End: Complemental strand, 8328108 - 8328052
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaata 871  Q
    ||||||||| |||||||||||||  ||||| |||||| || ||||||||||||||||    
T  8328108 tcataagctattccaaacagtctcataagtgcttatgccaatagataagctcaaata 8328052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 845 - 885
Target Start/End: Complemental strand, 17822824 - 17822784
Alignment:
Q  845 acttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  17822824 acttatgtcagtagataagctcaaataagttaatccaaaca 17822784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 815 - 871
Target Start/End: Complemental strand, 18628542 - 18628486
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaata 871  Q
    ||||||||||| |||||||||||   ||||  |||||||||||||||||||||||||    
T  18628542 tcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaata 18628486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 845 - 885
Target Start/End: Complemental strand, 27043789 - 27043749
Alignment:
Q  845 acttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  27043789 acttatgtcagtagataagctcaaataagtcaatccaaaca 27043749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 793 - 874
Target Start/End: Original strand, 27725271 - 27725354
Alignment:
Q  793 ttatggacatgacataagctaat--cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagt 874  Q
    ||||||||||| |||||| || |  ||||||||||  ||||||||| | || || ||||| |||||||||||||||||||||||    
T  27725271 ttatggacatgtcataagttatttccataagctctctcaaacagtcgtatatgtgcttatctcagtagataagctcaaataagt 27725354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 790 - 881
Target Start/End: Original strand, 50298570 - 50298662
Alignment:
Q  790 agcttatggacatgacataagctaatc-ataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattca 881  Q
    |||||||| ||||| ||||||||| |  ||||| | |||||||||||||   |||| |||||||||||||||||||| |||||| | ||||||    
T  50298570 agcttatgaacatgtcataagctattttataagtttttccaaacagtctcacaagtgcttatgtcagtagataagctaaaataaatcaattca 50298662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 850 - 885
Target Start/End: Original strand, 1133044 - 1133079
Alignment:
Q  850 tgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||||||||||||||||| ||||||||||    
T  1133044 tgtcagtagataagctcaaataagtcaattcaaaca 1133079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 818 - 873
Target Start/End: Original strand, 28615608 - 28615663
Alignment:
Q  818 taagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataag 873  Q
    |||||||||| ||||||||||  || | ||||||||| ||||||||||||||||||    
T  28615608 taagctcttcgaaacagtcttacaaatgcttatgtcattagataagctcaaataag 28615663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 841 - 883
Target Start/End: Original strand, 20656146 - 20656188
Alignment:
Q  841 aagtacttatgtcagtagataagctcaaataagtaaattcaaa 883  Q
    ||||||||||| |||||||||||||||||||| | ||||||||    
T  20656146 aagtacttatgacagtagataagctcaaataaatcaattcaaa 20656188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 874
Target Start/End: Original strand, 1017111 - 1017168
Alignment:
Q  817 ataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagt 874  Q
    ||||| |||||||||||||||   ||||  |||||||||||||| |||||||||||||    
T  1017111 ataagttcttccaaacagtctcacaagtgtttatgtcagtagattagctcaaataagt 1017168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 828 - 885
Target Start/End: Original strand, 2811565 - 2811622
Alignment:
Q  828 caaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||  ||| | |||||| |||||||||| ||||||||||| ||||||||||    
T  2811565 caaacagtctcataaatgcttatgccagtagataacctcaaataagtcaattcaaaca 2811622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 841 - 874
Target Start/End: Complemental strand, 33534132 - 33534099
Alignment:
Q  841 aagtacttatgtcagtagataagctcaaataagt 874  Q
    |||||||||||||| |||||||||||||||||||    
T  33534132 aagtacttatgtcactagataagctcaaataagt 33534099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 819 - 885
Target Start/End: Complemental strand, 11059714 - 11059648
Alignment:
Q  819 aagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||| ||| |||||||| ||||| ||||||||| |||||||||||| |||||| ||||||||||    
T  11059714 aagctctcccagacagtcttataagtgcttatgtcattagataagctcacataagtcaattcaaaca 11059648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 815 - 874
Target Start/End: Complemental strand, 2364449 - 2364390
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagt 874  Q
    |||||| ||||||||||||||||   ||||||||||||||| ||||||| ||||||||||    
T  2364449 tcataatctcttccaaacagtctcacaagtacttatgtcagaagataagttcaaataagt 2364390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 701 - 883
Target Start/End: Original strand, 12361156 - 12361343
Alignment:
Q  701 aaagataaaat-aagtcgaattgtttttgtataaacaataagctagtttcgtaagtaattttggagagtttagggaaataaactgaaatgagcttatgga 799  Q
    ||||||||||| ||||| |||||||||  ||||| | |||||||  |||| ||||| |||  |||||| | | ||||||||  |||||  ||||||||||    
T  12361156 aaagataaaatgaagtcaaattgttttcatataagctataagctgttttcataagttattcaggagagctaatggaaataagttgaaaacagcttatgga 12361255  T
Q  800 catgacataagctaat--cataag--ctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaa 883  Q
    |||| ||||||||| |   |||||  ||||  |||| |||||   |||||||||| |||||||||||| |||||||||| ||| ||||    
T  12361256 catgtcataagctatttctataagatctctctcaaagagtctaacaagtacttatatcagtagataagttcaaataagtcaatccaaa 12361343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 845 - 885
Target Start/End: Original strand, 38602438 - 38602478
Alignment:
Q  845 acttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  38602438 acttatgtcagtagataagctcaaataagtcaatccaaaca 38602478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 818 - 869
Target Start/End: Complemental strand, 25881401 - 25881350
Alignment:
Q  818 taagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaa 869  Q
    ||||||||| ||||||||||   |||||||||||||||||||||| ||||||    
T  25881401 taagctctttcaaacagtctcacaagtacttatgtcagtagataaactcaaa 25881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 852 - 886
Target Start/End: Complemental strand, 7712003 - 7711969
Alignment:
Q  852 tcagtagataagctcaaataagtaaattcaaacaa 886  Q
    ||||||||||||||||||||||| |||||||||||    
T  7712003 tcagtagataagctcaaataagtcaattcaaacaa 7711969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 673 - 743
Target Start/End: Original strand, 10114426 - 10114496
Alignment:
Q  673 tgcttatgtatgatctatttttgttacaaaagataaaataagtcgaattgtttttgtataaacaataagct 743  Q
    ||||||||||| | |||||| | |  ||||||||||||||||| |||||||||| |||||| | |||||||    
T  10114426 tgcttatgtataagctatttctatagcaaaagataaaataagttgaattgttttggtataagctataagct 10114496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 870
Target Start/End: Original strand, 24326113 - 24326167
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaat 870  Q
    |||||||||| |||||||||||   |||| |||||| ||||||||||||||||||    
T  24326113 cataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 814 - 883
Target Start/End: Original strand, 1821909 - 1821978
Alignment:
Q  814 atcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaa 883  Q
    |||||||| ||||||||| ||||||  ||||  ||||||| |||  ||||||||||||||| ||||||||    
T  1821909 atcataagttcttccaaatagtcttacaagtgtttatgtcggtatctaagctcaaataagtcaattcaaa 1821978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 814 - 883
Target Start/End: Original strand, 1856354 - 1856423
Alignment:
Q  814 atcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaa 883  Q
    |||||||| ||||||||| ||||||  ||||  ||||||| |||  ||||||||||||||| ||||||||    
T  1856354 atcataagttcttccaaatagtcttacaagtgtttatgtcggtatctaagctcaaataagtcaattcaaa 1856423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 886
Target Start/End: Original strand, 6292494 - 6292644
Alignment:
Q  737 ataagctagtttcgtaagtaattttggagagtttagggaaataaactgaaatgagcttatggacatgacataagctaatc-ataagctcttccaaacagt 835  Q
    |||||||| ||||||||   ||||||||||| ||| | |||||| ||||||  |||||||| ||||| ||||||||  |  | ||  ||| ||||||| |    
T  6292494 ataagctattttcgtaaactattttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctgttttaaaaattctcccaaacaat 6292593  T
Q  836 cttttaagtacttatgtcagtagataagctcaaataagtaaattcaaacaa 886  Q
    ||   |||| ||||||||||||||||||||||||||||| ||| |||||||    
T  6292594 ctcaaaagtgcttatgtcagtagataagctcaaataagtcaatccaaacaa 6292644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 815 - 883
Target Start/End: Complemental strand, 7252609 - 7252541
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaa 883  Q
    ||||||| ||| ||||||||| | | |||||||||||| ||||||| ||||||||||||  ||||||||    
T  7252609 tcataagttctcccaaacagtttctcaagtacttatgttagtagattagctcaaataagctaattcaaa 7252541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 829 - 873
Target Start/End: Complemental strand, 28837328 - 28837284
Alignment:
Q  829 aaacagtcttttaagtacttatgtcagtagataagctcaaataag 873  Q
    ||||||||| | |||| ||||||||||||||||||||||||||||    
T  28837328 aaacagtctctcaagtgcttatgtcagtagataagctcaaataag 28837284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 818 - 885
Target Start/End: Complemental strand, 12564485 - 12564418
Alignment:
Q  818 taagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    |||||||| ||||||||||    |||| ||||| |||||| |||||||||||||||| ||||||||||    
T  12564485 taagctctcccaaacagtcacacaagtgcttatatcagtatataagctcaaataagtcaattcaaaca 12564418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 816 - 883
Target Start/End: Complemental strand, 17009570 - 17009503
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaa 883  Q
    |||||||||| ||||||||||    ||| | |||||||||||||||| ||||||||||| ||||||||    
T  17009570 cataagctctcccaaacagtccaacaaggaattatgtcagtagataaactcaaataagtcaattcaaa 17009503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 687 - 726
Target Start/End: Complemental strand, 29794042 - 29794003
Alignment:
Q  687 ctatttttgttacaaaagataaaataagtcgaattgtttt 726  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  29794042 ctatttttgtaacaaaagataaaataagtcaaattgtttt 29794003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 815 - 885
Target Start/End: Complemental strand, 4276639 - 4276569
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||| ||||||| |||||   || | |||||| ||| |||||||||||||||||||||| ||||||    
T  4276639 tcataagcttttccaaatagtctaacaaatgcttatgccagaagataagctcaaataagtaaatccaaaca 4276569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 823 - 885
Target Start/End: Original strand, 4622182 - 4622244
Alignment:
Q  823 tcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    |||||||||||||||   |||| ||||||||| ||| |||||| |||||||| ||||||||||    
T  4622182 tcttccaaacagtctaacaagttcttatgtcattagttaagcttaaataagtcaattcaaaca 4622244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 815 - 885
Target Start/End: Original strand, 27807196 - 27807266
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    |||||||||||  |||||||||||  || | |||||||||||||| ||| |||||||||| |||| |||||    
T  27807196 tcataagctctctcaaacagtcttacaaatgcttatgtcagtagaaaagttcaaataagtcaatttaaaca 27807266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 845 - 887
Target Start/End: Original strand, 41505785 - 41505827
Alignment:
Q  845 acttatgtcagtagataagctcaaataagtaaattcaaacaag 887  Q
    |||||||||||||||||||||||||||||  ||| ||||||||    
T  41505785 acttatgtcagtagataagctcaaataagccaatccaaacaag 41505827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 820 - 873
Target Start/End: Original strand, 15581340 - 15581393
Alignment:
Q  820 agctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataag 873  Q
    |||||||||||||| |||   |||| |||||||||||||||||||| |||||||    
T  15581340 agctcttccaaacaatctcacaagtgcttatgtcagtagataagctaaaataag 15581393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 885
Target Start/End: Original strand, 26866395 - 26866464
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    |||||||||||||||| |||||   ||||| || ||| |||||||||||| |||||||| ||| ||||||    
T  26866395 cataagctcttccaaatagtctcagaagtatttgtgttagtagataagctgaaataagtcaatccaaaca 26866464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 845 - 874
Target Start/End: Complemental strand, 33204353 - 33204324
Alignment:
Q  845 acttatgtcagtagataagctcaaataagt 874  Q
    ||||||||||||||||||||||||||||||    
T  33204353 acttatgtcagtagataagctcaaataagt 33204324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 816 - 868
Target Start/End: Original strand, 34927045 - 34927097
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaa 868  Q
    |||||| |||||||||||||||| ||||| |||||||||||| ||||||||||    
T  34927045 cataagttcttccaaacagtcttataagtgcttatgtcagtaaataagctcaa 34927097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 816 - 886
Target Start/End: Complemental strand, 5759563 - 5759493
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaacaa 886  Q
    |||||||||| |||||||||||   ||||||||||  || ||||||| |||||||||||||| ||||||||    
T  5759563 cataagctctcccaaacagtctcacaagtacttataccaatagataaactcaaataagtaaactcaaacaa 5759493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 828 - 885
Target Start/End: Original strand, 3973636 - 3973693
Alignment:
Q  828 caaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||| ||||||    
T  3973636 caaacagtcttataagtgcttatatcagtggataagctcaaataagtgaatccaaaca 3973693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 885
Target Start/End: Original strand, 22878180 - 22878249
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    |||||| ||| |||||||||||   |||| ||||||||||| ||||||||||||||||| ||| ||||||    
T  22878180 cataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaaca 22878249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 815 - 886
Target Start/End: Original strand, 4350771 - 4350842
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaacaa 886  Q
    ||||||| |||  |||||| ||| |||||| |||||||||||||| |||||||||||||  ||| |||||||    
T  4350771 tcataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataagccaatccaaacaa 4350842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 827 - 886
Target Start/End: Complemental strand, 21280026 - 21279967
Alignment:
Q  827 ccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaacaa 886  Q
    |||||||||||  |||||| |||||||||  ||||| ||||||||||| |||||||||||    
T  21280026 ccaaacagtctcgtaagtatttatgtcagccgataaactcaaataagtcaattcaaacaa 21279967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 870
Target Start/End: Original strand, 13864717 - 13864771
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaat 870  Q
    |||||||||||||||| ||||||  || |  ||||||||||||||||||||||||    
T  13864717 cataagctcttccaaatagtcttacaattgtttatgtcagtagataagctcaaat 13864771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 820 - 874
Target Start/End: Complemental strand, 14277877 - 14277823
Alignment:
Q  820 agctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagt 874  Q
    |||||||||||||| |||   ||||||||||||| |||||||| |||||||||||    
T  14277877 agctcttccaaacactctcacaagtacttatgtccgtagataaactcaaataagt 14277823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 847 - 885
Target Start/End: Complemental strand, 18525198 - 18525160
Alignment:
Q  847 ttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  18525198 ttatgtctgtagataagctcaaataagtcaattcaaaca 18525160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 815 - 873
Target Start/End: Original strand, 26548534 - 26548592
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataag 873  Q
    |||||||| |||||||| |||||   || |||||||||| |||||||||||||||||||    
T  26548534 tcataagcccttccaaatagtctcacaaatacttatgtcggtagataagctcaaataag 26548592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 845 - 887
Target Start/End: Original strand, 30331862 - 30331904
Alignment:
Q  845 acttatgtcagtagataagctcaaataagtaaattcaaacaag 887  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||    
T  30331862 acttatgtcagtagataagctgaaataagtcaatccaaacaag 30331904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 873
Target Start/End: Original strand, 25609878 - 25609935
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataag 873  Q
    |||||||| |||||| ||||||   |||| ||||||| ||||||||||||||||||||    
T  25609878 cataagctattccaagcagtctcacaagttcttatgttagtagataagctcaaataag 25609935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 790 - 872
Target Start/End: Original strand, 29430812 - 29430896
Alignment:
Q  790 agcttatggacatgacataagctaat--cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataa 872  Q
    |||| ||||||||| ||||||||| |  |||||| ||||||||| ||||    ||||  ||||||||||||||||||||||||||    
T  29430812 agctaatggacatgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagtagataagctcaaataa 29430896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 828 - 885
Target Start/End: Complemental strand, 40077487 - 40077430
Alignment:
Q  828 caaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    |||| ||||||  |||| |||||||||||| ||||||||| |||||| ||||||||||    
T  40077487 caaagagtcttagaagtgcttatgtcagtacataagctcagataagtcaattcaaaca 40077430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 819 - 884
Target Start/End: Complemental strand, 43456692 - 43456627
Alignment:
Q  819 aagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaac 884  Q
    |||||||| |||||||||||  ||||  |||||| |||| ||||| |||||||||||||| |||||    
T  43456692 aagctctttcaaacagtcttacaagtgtttatgtgagtaaataagttcaaataagtaaatccaaac 43456627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 789 - 873
Target Start/End: Original strand, 42646944 - 42647029
Alignment:
Q  789 gagcttatggacatgacataagctaat--cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataag 873  Q
    ||||||||| ||||| ||||||||| |  |||||| ||||||||| ||||||  |||| || |||||||||||||||||||||||||    
T  42646944 gagcttatgaacatgtcataagctattttcataagttcttccaaatagtcttc-aagtgctaatgtcagtagataagctcaaataag 42647029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 885
Target Start/End: Complemental strand, 11297184 - 11297115
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||| |||||||||||  ||||  ||||| || |||||||||| |||||||| ||||||||||    
T  11297184 cataagctctttcaaacagtcttacaagtgtttatgccactagataagcttaaataagtcaattcaaaca 11297115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 850 - 887
Target Start/End: Original strand, 28578961 - 28578998
Alignment:
Q  850 tgtcagtagataagctcaaataagtaaattcaaacaag 887  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  28578961 tgtcagtagataagctcaaataagtcaattcaaacaag 28578998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 815 - 874
Target Start/End: Original strand, 17498792 - 17498851
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagt 874  Q
    ||||||||||||| ||||| |||   ||||||||| |||| |||||||||||||||||||    
T  17498792 tcataagctcttcaaaacaatctcaaaagtacttaagtcattagataagctcaaataagt 17498851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 820 - 886
Target Start/End: Original strand, 34975450 - 34975515
Alignment:
Q  820 agctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaacaa 886  Q
    ||||||| ||||||||||  |||||  |||||| ||||||||||||| ||||||| |||||||||||    
T  34975450 agctctttcaaacagtctcataagtgattatgttagtagataagctc-aataagtcaattcaaacaa 34975515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 845 - 887
Target Start/End: Original strand, 39594918 - 39594960
Alignment:
Q  845 acttatgtcagtagataagctcaaataagtaaattcaaacaag 887  Q
    ||||||||| |||||||||||||||||||| ||| ||||||||    
T  39594918 acttatgtcggtagataagctcaaataagtcaatccaaacaag 39594960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 841 - 886
Target Start/End: Complemental strand, 9711230 - 9711185
Alignment:
Q  841 aagtacttatgtcagtagataagctcaaataagtaaattcaaacaa 886  Q
    |||| |||||| ||||||||||| ||||||||| ||||||||||||    
T  9711230 aagtgcttatggcagtagataagatcaaataagaaaattcaaacaa 9711185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 874
Target Start/End: Original strand, 14980592 - 14980649
Alignment:
Q  817 ataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagt 874  Q
    |||||||||  |||||||||| |  ||| |||||| ||||||||||||||||||||||    
T  14980592 ataagctctctcaaacagtctctatagtgcttatgccagtagataagctcaaataagt 14980649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 830 - 883
Target Start/End: Original strand, 33961779 - 33961832
Alignment:
Q  830 aacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaa 883  Q
    ||||||||  ||||| |||||||| |||||||||||||||||| | ||||||||    
T  33961779 aacagtctcataagtgcttatgtccgtagataagctcaaataattcaattcaaa 33961832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 841 - 874
Target Start/End: Original strand, 37968984 - 37969017
Alignment:
Q  841 aagtacttatgtcagtagataagctcaaataagt 874  Q
    ||||||||||||||||||||||||||||| ||||    
T  37968984 aagtacttatgtcagtagataagctcaaacaagt 37969017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 828 - 885
Target Start/End: Complemental strand, 30536941 - 30536884
Alignment:
Q  828 caaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||||||  ||||||||||||| ||||||||| ||||||||||| ||| ||||||    
T  30536941 caaacagtctaataagtacttatgtaagtagataaactcaaataagtcaatccaaaca 30536884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 841 - 889
Target Start/End: Complemental strand, 35070430 - 35070382
Alignment:
Q  841 aagtacttatgtcagtagataagctcaaataagtaaattcaaacaagtc 889  Q
    |||| ||||||| |||||||||||||||||||| |||| ||||||||||    
T  35070430 aagtgcttatgttagtagataagctcaaataagaaaatccaaacaagtc 35070382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 847 - 886
Target Start/End: Original strand, 13908353 - 13908392
Alignment:
Q  847 ttatgtcagtagataagctcaaataagtaaattcaaacaa 886  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  13908353 ttatgtcagtagataagttcaaataagtcaattcaaacaa 13908392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 841 - 888
Target Start/End: Original strand, 32916943 - 32916989
Alignment:
Q  841 aagtacttatgtcagtagataagctcaaataagtaaattcaaacaagt 888  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  32916943 aagtacttatgtctgtagataagctcaaataag-aaatccaaacaagt 32916989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 882
Target Start/End: Original strand, 2455892 - 2455958
Alignment:
Q  816 cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaa 882  Q
    |||||||||||| ||||| |||   |||| |||||| | |||||||||||||||||||| |||||||    
T  2455892 cataagctcttctaaacaatctcgcaagtgcttatgccggtagataagctcaaataagtcaattcaa 2455958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 815 - 885
Target Start/End: Original strand, 29249474 - 29249544
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataagtaaattcaaaca 885  Q
    ||||||| ||| | ||||||||||  ||||||||||  ||||| |||||||||||||||| ||| ||||||    
T  29249474 tcataagatctacgaaacagtcttacaagtacttataacagtaaataagctcaaataagtcaatccaaaca 29249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 815 - 873
Target Start/End: Original strand, 31774458 - 31774516
Alignment:
Q  815 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaataag 873  Q
    |||| ||||||||||||||||||  ||||| |||||| | |||||||| ||||||||||    
T  31774458 tcatgagctcttccaaacagtctcataagtgcttatgccggtagataaactcaaataag 31774516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 866
Target Start/End: Original strand, 32976061 - 32976110
Alignment:
Q  817 ataagctcttccaaacagtcttttaagtacttatgtcagtagataagctc 866  Q
    |||||||||||||||||||||   ||||||||||| ||||| ||||||||    
T  32976061 ataagctcttccaaacagtctcacaagtacttatgccagtaaataagctc 32976110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 773 - 869
Target Start/End: Original strand, 27613 - 27711
Alignment:
Q  773 ggaaataaactgaaatgagcttatggacatgacataagctaat--cataagctcttccaaacagtcttttaagtacttatgtcagtagataagctcaaa 869  Q
    |||||||| ||||||  | ||||| | |||| ||||||||| |  |||||||||| |||||||||||   |||||| ||||||||||||| ||||||||    
T  27613 ggaaataagctgaaaacaacttatagccatgtcataagctatttccataagctctcccaaacagtctcagaagtacatatgtcagtagatcagctcaaa 27711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University